RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 SLC24A3Q9HC58 644 aa5.92□□□□□ -1.46
CCDC39-203ENST00000473854 ATXN7O15265 892 aaPredicted RBP5.91□□□□□ -1.46
CCDC39-203ENST00000473854 PPARGC1BQ86YN6 1023 aaKnown RBP5.91□□□□□ -1.46
CCDC39-203ENST00000473854 ZCCHC2Q9C0B9 1178 aaKnown RBP5.91□□□□□ -1.46
CCDC39-203ENST00000473854 TPSG1Q9NRR2 321 aa5.91□□□□□ -1.46
CCDC39-203ENST00000473854 ALAS2P22557 587 aa5.9□□□□□ -1.46
CCDC39-203ENST00000473854 LRP8Q14114 963 aa5.9□□□□□ -1.46
CCDC39-203ENST00000473854 FOXD4L6Q3SYB3 417 aaPredicted RBP5.9□□□□□ -1.46
CCDC39-203ENST00000473854 ZNF468Q5VIY5 522 aaPredicted RBP5.9□□□□□ -1.46
CCDC39-203ENST00000473854 FOXD4L3Q6VB84 417 aaPredicted RBP5.9□□□□□ -1.46
CCDC39-203ENST00000473854 KRTAP4-9Q9BYQ8 210 aa5.9□□□□□ -1.46
CCDC39-203ENST00000473854 PRR12Q9ULL5 1215 aa5.9□□□□□ -1.46
CCDC39-203ENST00000473854 TLR1Q15399 786 aa5.89□□□□□ -1.47
CCDC39-203ENST00000473854 FCHSD1Q86WN1 690 aa5.89□□□□□ -1.47
CCDC39-203ENST00000473854 DNAAF2Q9NVR5 837 aaKnown RBP5.89□□□□□ -1.47
CCDC39-203ENST00000473854 ELOA3CA0A087WX78 387 aaPredicted RBP5.88□□□□□ -1.47
CCDC39-203ENST00000473854 ELOA3DA6NLF2 546 aaPredicted RBP5.88□□□□□ -1.47
CCDC39-203ENST00000473854 MAPTP10636 758 aaKnown RBP5.88□□□□□ -1.47
CCDC39-203ENST00000473854 PLA2G4AP47712 749 aa5.88□□□□□ -1.47
CCDC39-203ENST00000473854 TNP2Q05952 138 aa5.88□□□□□ -1.47
CCDC39-203ENST00000473854 NBPF1Q3BBV0 1214 aa5.88□□□□□ -1.47
CCDC39-203ENST00000473854 ELOA3BQ3SY89 546 aa5.88□□□□□ -1.47
CCDC39-203ENST00000473854 PRSS36Q5K4E3 855 aa5.88□□□□□ -1.47
CCDC39-203ENST00000473854 ELOA3Q8NG57 546 aa5.88□□□□□ -1.47
CCDC39-203ENST00000473854 KRTAP4-2Q9BYR5 136 aa5.88□□□□□ -1.47
CCDC39-203ENST00000473854 H2AFB1P0C5Y9 115 aa5.87□□□□□ -1.47
CCDC39-203ENST00000473854 H2AFB2P0C5Z0 115 aa5.87□□□□□ -1.47
CCDC39-203ENST00000473854 FAM157BP0CG42 384 aa5.87□□□□□ -1.47
CCDC39-203ENST00000473854 LAMC2Q13753 1193 aa5.87□□□□□ -1.47
CCDC39-203ENST00000473854 SIRT1Q96EB6 747 aa5.87□□□□□ -1.47
CCDC39-203ENST00000473854 NIFKQ9BYG3 293 aaKnown RBP5.87□□□□□ -1.47
CCDC39-203ENST00000473854 DCDC2BA2VCK2 349 aa5.86□□□□□ -1.47
CCDC39-203ENST00000473854 APBB1O00213 710 aa5.86□□□□□ -1.47
CCDC39-203ENST00000473854 KHNYNO15037 678 aaKnown RBP5.86□□□□□ -1.47
CCDC39-203ENST00000473854 TATP17735 454 aaPredicted RBP5.86□□□□□ -1.47
CCDC39-203ENST00000473854 CD33P20138 364 aa5.86□□□□□ -1.47
CCDC39-203ENST00000473854 USP4Q13107 963 aa5.86□□□□□ -1.47
CCDC39-203ENST00000473854 TRIM28Q13263 835 aaKnown RBP5.86□□□□□ -1.47
CCDC39-203ENST00000473854 GJA3Q9Y6H8 435 aa5.86□□□□□ -1.47
CCDC39-203ENST00000473854 ATP4AP20648 1035 aa5.85□□□□□ -1.47
CCDC39-203ENST00000473854 ARSJQ5FYB0 599 aaPredicted RBP5.85□□□□□ -1.47
CCDC39-203ENST00000473854 KDM4CQ9H3R0 1056 aa5.85□□□□□ -1.47
CCDC39-203ENST00000473854 PRDM6Q9NQX0 595 aa5.85□□□□□ -1.47
CCDC39-203ENST00000473854 ZDHHC3Q9NYG2 299 aa5.85□□□□□ -1.47
CCDC39-203ENST00000473854 MARK1Q9P0L2 795 aa5.85□□□□□ -1.47
CCDC39-203ENST00000473854 KLF15Q9UIH9 416 aa5.85□□□□□ -1.47
CCDC39-203ENST00000473854 A0A1W2PNR3 127 aa5.84□□□□□ -1.47
CCDC39-203ENST00000473854 C9orf172C9J069 976 aa5.84□□□□□ -1.47
CCDC39-203ENST00000473854 SOCS7O14512 581 aa5.84□□□□□ -1.47
CCDC39-203ENST00000473854 PCBP4P57723 403 aaKnown RBP5.84□□□□□ -1.47
CCDC39-203ENST00000473854 SAMD5Q5TGI4 173 aa5.84□□□□□ -1.47
CCDC39-203ENST00000473854 AIDAQ96BJ3 306 aa5.84□□□□□ -1.47
CCDC39-203ENST00000473854 GJD4Q96KN9 370 aaPredicted RBP5.84□□□□□ -1.47
CCDC39-203ENST00000473854 FAM117AQ9C073 453 aa5.84□□□□□ -1.47
CCDC39-203ENST00000473854 GOPCQ9HD26 462 aa5.84□□□□□ -1.47
CCDC39-203ENST00000473854 PCMTD1Q96MG8 357 aaPredicted RBP5.83□□□□□ -1.48
CCDC39-203ENST00000473854 ETNK1Q9HBU6 452 aa5.83□□□□□ -1.48
CCDC39-203ENST00000473854 ADARB2-AS1A8MUL3 147 aa5.82□□□□□ -1.48
CCDC39-203ENST00000473854 SIN3BO75182 1162 aa5.82□□□□□ -1.48
CCDC39-203ENST00000473854 NRG1Q02297 640 aaPredicted RBP5.82□□□□□ -1.48
CCDC39-203ENST00000473854 CEP126Q9P2H0 1117 aa5.82□□□□□ -1.48
CCDC39-203ENST00000473854 DOLKQ9UPQ8 538 aa5.82□□□□□ -1.48
CCDC39-203ENST00000473854 NDUFB9Q9Y6M9 179 aa5.82□□□□□ -1.48
CCDC39-203ENST00000473854 M0R082 166 aa5.81□□□□□ -1.48
CCDC39-203ENST00000473854 HYAL3O43820 417 aaPredicted RBP5.81□□□□□ -1.48
CCDC39-203ENST00000473854 NEUROD1Q13562 356 aa5.81□□□□□ -1.48
CCDC39-203ENST00000473854 ZNF417Q8TAU3 575 aa5.81□□□□□ -1.48
CCDC39-203ENST00000473854 CCDC85AQ96PX6 553 aaPredicted RBP5.81□□□□□ -1.48
CCDC39-203ENST00000473854 ZNF587Q96SQ5 575 aaPredicted RBP5.81□□□□□ -1.48
CCDC39-203ENST00000473854 CDCA7Q9BWT1 371 aaPredicted RBP5.81□□□□□ -1.48
CCDC39-203ENST00000473854 KRTAP17-1Q9BYP8 105 aa5.81□□□□□ -1.48
CCDC39-203ENST00000473854 PAX4O43316 350 aa5.8□□□□□ -1.48
CCDC39-203ENST00000473854 SYT9Q86SS6 491 aa5.8□□□□□ -1.48
CCDC39-203ENST00000473854 EFSO43281 561 aa5.79□□□□□ -1.48
CCDC39-203ENST00000473854 INHAP05111 366 aa5.79□□□□□ -1.48
CCDC39-203ENST00000473854 TXKP42681 527 aa5.79□□□□□ -1.48
CCDC39-203ENST00000473854 TXNRD3Q86VQ6 643 aa5.79□□□□□ -1.48
CCDC39-203ENST00000473854 TNFRSF25Q93038 417 aa5.79□□□□□ -1.48
CCDC39-203ENST00000473854 MDFIQ99750 246 aa5.79□□□□□ -1.48
CCDC39-203ENST00000473854 COBLO75128 1261 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 ELNP15502 786 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 YBX3P16989 372 aaKnown RBP eCLIP5.78□□□□□ -1.48
CCDC39-203ENST00000473854 SMTNP53814 917 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 GDF10P55107 478 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 ADGRE1Q14246 886 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 SLFNL1Q499Z3 407 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 MCTP1Q6DN14 999 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 BICDL1Q6ZP65 573 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 ZIC5Q96T25 663 aa5.78□□□□□ -1.48
CCDC39-203ENST00000473854 RAC1P63000 192 aa5.77□□□□□ -1.49
CCDC39-203ENST00000473854 EIF4G2P78344 907 aaKnown RBP eCLIP5.77□□□□□ -1.49
CCDC39-203ENST00000473854 MBTPS1Q14703 1052 aa5.77□□□□□ -1.49
CCDC39-203ENST00000473854 MICALL1Q8N3F8 863 aa5.77□□□□□ -1.49
CCDC39-203ENST00000473854 BANK1Q8NDB2 785 aa5.77□□□□□ -1.49
CCDC39-203ENST00000473854 GPBP1L1Q9HC44 474 aaPredicted RBP5.77□□□□□ -1.49
CCDC39-203ENST00000473854 GPC6Q9Y625 555 aaPredicted RBP5.77□□□□□ -1.49
CCDC39-203ENST00000473854 FAM229AH3BQW9 127 aa5.76□□□□□ -1.49
CCDC39-203ENST00000473854 CDK2AP1O14519 115 aa5.76□□□□□ -1.49
CCDC39-203ENST00000473854 NID1P14543 1247 aa5.76□□□□□ -1.49
CCDC39-203ENST00000473854 GRIK4Q16099 956 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms