RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TEFQ10587 303 aa25.21■■□□□ 1.63
CCDC88B-206ENST00000473405 C1QTNF8P60827 252 aa25.2■■□□□ 1.62
CCDC88B-206ENST00000473405 USPL1Q5W0Q7 1092 aa25.2■■□□□ 1.62
CCDC88B-206ENST00000473405 TTC5Q8N0Z6 440 aa25.2■■□□□ 1.62
CCDC88B-206ENST00000473405 DPEP1P16444 411 aa25.19■■□□□ 1.62
CCDC88B-206ENST00000473405 ZNF790Q6PG37 636 aa25.19■■□□□ 1.62
CCDC88B-206ENST00000473405 ZNF496Q96IT1 587 aaPredicted RBP25.19■■□□□ 1.62
CCDC88B-206ENST00000473405 HEG1Q9ULI3 1381 aa25.18■■□□□ 1.62
CCDC88B-206ENST00000473405 POLRMTO00411 1230 aaKnown RBP25.18■■□□□ 1.62
CCDC88B-206ENST00000473405 GIGYF1O75420 1035 aaPredicted RBP25.18■■□□□ 1.62
CCDC88B-206ENST00000473405 TM4SF1P30408 202 aa25.18■■□□□ 1.62
CCDC88B-206ENST00000473405 NUDCQ9Y266 331 aa25.18■■□□□ 1.62
CCDC88B-206ENST00000473405 ZPR1O75312 459 aa25.17■■□□□ 1.62
CCDC88B-206ENST00000473405 U2AF1L5P0DN76 240 aaPredicted RBP25.17■■□□□ 1.62
CCDC88B-206ENST00000473405 KCNA3P22001 575 aa25.17■■□□□ 1.62
CCDC88B-206ENST00000473405 U2AF1Q01081 240 aaKnown RBP eCLIP25.17■■□□□ 1.62
CCDC88B-206ENST00000473405 NARFQ9UHQ1 456 aa25.17■■□□□ 1.62
CCDC88B-206ENST00000473405 DLEC1Q9Y238 1755 aa25.17■■□□□ 1.62
CCDC88B-206ENST00000473405 DLG5Q8TDM6 1919 aa25.17■■□□□ 1.62
CCDC88B-206ENST00000473405 BCL2L12Q9HB09 334 aa25.15■■□□□ 1.62
CCDC88B-206ENST00000473405 BCS1LQ9Y276 419 aa25.15■■□□□ 1.62
CCDC88B-206ENST00000473405 BCORQ6W2J9 1755 aa25.13■■□□□ 1.61
CCDC88B-206ENST00000473405 FCHSD2O94868 740 aa25.13■■□□□ 1.61
CCDC88B-206ENST00000473405 STARD3NLO95772 234 aa25.13■■□□□ 1.61
CCDC88B-206ENST00000473405 CANXP27824 592 aaKnown RBP25.13■■□□□ 1.61
CCDC88B-206ENST00000473405 EIF5P55010 431 aaKnown RBP25.12■■□□□ 1.61
CCDC88B-206ENST00000473405 NFIXQ14938 502 aa25.12■■□□□ 1.61
CCDC88B-206ENST00000473405 KCNQ3O43525 872 aa25.11■■□□□ 1.61
CCDC88B-206ENST00000473405 FMNL2Q96PY5 1086 aa25.11■■□□□ 1.61
CCDC88B-206ENST00000473405 ANKRD31Q8N7Z5 1873 aa25.1■■□□□ 1.61
CCDC88B-206ENST00000473405 BTBD11A6QL63 1104 aa25.09■■□□□ 1.61
CCDC88B-206ENST00000473405 CHRNA5P30532 468 aa25.09■■□□□ 1.61
CCDC88B-206ENST00000473405 MCM10Q7L590 875 aa25.09■■□□□ 1.61
CCDC88B-206ENST00000473405 TEX13AQ9BXU3 409 aaPredicted RBP25.09■■□□□ 1.61
CCDC88B-206ENST00000473405 GPBP1L1Q9HC44 474 aaPredicted RBP25.09■■□□□ 1.61
CCDC88B-206ENST00000473405 ZNF526Q8TF50 670 aaPredicted RBP25.08■■□□□ 1.61
CCDC88B-206ENST00000473405 PIM2Q9P1W9 311 aa25.08■■□□□ 1.61
CCDC88B-206ENST00000473405 LAMB4A4D0S4 1761 aa25.07■■□□□ 1.6
CCDC88B-206ENST00000473405 KDM3BQ7LBC6 1761 aa25.07■■□□□ 1.6
CCDC88B-206ENST00000473405 CARMIL3Q8ND23 1372 aa25.06■■□□□ 1.6
CCDC88B-206ENST00000473405 SENP3-EIF4A1A0A087X0R7 540 aa25.06■■□□□ 1.6
CCDC88B-206ENST00000473405 SBF1O95248 1867 aa25.06■■□□□ 1.6
CCDC88B-206ENST00000473405 COL11A2P13942 1736 aaPredicted RBP25.06■■□□□ 1.6
CCDC88B-206ENST00000473405 A0A087WZG4 1122 aa25.05■■□□□ 1.6
CCDC88B-206ENST00000473405 IL6STP40189 918 aaPredicted RBP25.05■■□□□ 1.6
CCDC88B-206ENST00000473405 DCTN1Q14203 1278 aa25.05■■□□□ 1.6
CCDC88B-206ENST00000473405 ARHGAP27Q6ZUM4 889 aa25.05■■□□□ 1.6
CCDC88B-206ENST00000473405 RTF1Q92541 710 aaKnown RBP25.05■■□□□ 1.6
CCDC88B-206ENST00000473405 A1BGP04217 495 aa25.04■■□□□ 1.6
CCDC88B-206ENST00000473405 SERPINB2P05120 415 aa25.04■■□□□ 1.6
CCDC88B-206ENST00000473405 DALRD3Q5D0E6 543 aaKnown RBP25.04■■□□□ 1.6
CCDC88B-206ENST00000473405 PRAMEF22A3QJZ6 481 aa25.03■■□□□ 1.6
CCDC88B-206ENST00000473405 HTATSF1O43719 755 aaKnown RBP25.03■■□□□ 1.6
CCDC88B-206ENST00000473405 TBC1D2BQ9UPU7 963 aa25.02■■□□□ 1.6
CCDC88B-206ENST00000473405 ZNF330Q9Y3S2 320 aaPredicted RBP25.02■■□□□ 1.6
CCDC88B-206ENST00000473405 TBC1D9BQ66K14 1250 aa25.01■■□□□ 1.59
CCDC88B-206ENST00000473405 USP16Q9Y5T5 823 aa25.01■■□□□ 1.59
CCDC88B-206ENST00000473405 BICDL1Q6ZP65 573 aa25■■□□□ 1.59
CCDC88B-206ENST00000473405 PLEKHF1Q96S99 279 aa25■■□□□ 1.59
CCDC88B-206ENST00000473405 CAMTA2O94983 1202 aa24.98■■□□□ 1.59
CCDC88B-206ENST00000473405 PIP4K2AP48426 406 aaPredicted RBP24.98■■□□□ 1.59
CCDC88B-206ENST00000473405 KIF3CO14782 793 aa24.97■■□□□ 1.59
CCDC88B-206ENST00000473405 SNRPA1P09661 255 aaKnown RBP24.97■■□□□ 1.59
CCDC88B-206ENST00000473405 C9orf131Q5VYM1 1079 aa24.96■■□□□ 1.59
CCDC88B-206ENST00000473405 TAF7Q15545 349 aaPredicted RBP24.95■■□□□ 1.58
CCDC88B-206ENST00000473405 DZIP3Q86Y13 1208 aaKnown RBP24.95■■□□□ 1.58
CCDC88B-206ENST00000473405 CACNA1SQ13698 1873 aa24.95■■□□□ 1.58
CCDC88B-206ENST00000473405 ARFGEF2Q9Y6D5 1785 aa24.95■■□□□ 1.58
CCDC88B-206ENST00000473405 TIAM2Q8IVF5 1701 aa24.95■■□□□ 1.58
CCDC88B-206ENST00000473405 CCDC88AQ3V6T2 1871 aa24.94■■□□□ 1.58
CCDC88B-206ENST00000473405 PRR5LQ6MZQ0 368 aa24.94■■□□□ 1.58
CCDC88B-206ENST00000473405 C2CD5Q86YS7 1000 aa24.94■■□□□ 1.58
CCDC88B-206ENST00000473405 NBPF26B4DH59 902 aa24.93■■□□□ 1.58
CCDC88B-206ENST00000473405 NFE2L2Q16236 605 aa24.93■■□□□ 1.58
CCDC88B-206ENST00000473405 NBPF10Q6P3W6 841 aaKnown RBP24.93■■□□□ 1.58
CCDC88B-206ENST00000473405 NBPF15Q8N660 670 aa24.93■■□□□ 1.58
CCDC88B-206ENST00000473405 MIS18AQ9NYP9 233 aa24.93■■□□□ 1.58
CCDC88B-206ENST00000473405 TNRC6CQ9HCJ0 1690 aaKnown RBP24.92■■□□□ 1.58
CCDC88B-206ENST00000473405 NEFMP07197 916 aa24.92■■□□□ 1.58
CCDC88B-206ENST00000473405 NPM2Q86SE8 214 aaKnown RBP24.92■■□□□ 1.58
CCDC88B-206ENST00000473405 H0YIN7 160 aa24.91■■□□□ 1.58
CCDC88B-206ENST00000473405 CCDC24Q8N4L8 307 aa24.91■■□□□ 1.58
CCDC88B-206ENST00000473405 TTLL6Q8N841 843 aa24.91■■□□□ 1.58
CCDC88B-206ENST00000473405 THUMPD2Q9BTF0 503 aaKnown RBP24.91■■□□□ 1.58
CCDC88B-206ENST00000473405 FER1L6Q2WGJ9 1857 aa24.91■■□□□ 1.58
CCDC88B-206ENST00000473405 RASSF7Q02833 373 aa24.9■■□□□ 1.58
CCDC88B-206ENST00000473405 RALBP1Q15311 655 aa24.9■■□□□ 1.58
CCDC88B-206ENST00000473405 SETDB2Q96T68 719 aa24.9■■□□□ 1.58
CCDC88B-206ENST00000473405 BRIP1Q9BX63 1249 aa24.9■■□□□ 1.58
CCDC88B-206ENST00000473405 RNF181Q9P0P0 153 aa24.9■■□□□ 1.58
CCDC88B-206ENST00000473405 NMRK2Q9NPI5 230 aa24.89■■□□□ 1.58
CCDC88B-206ENST00000473405 MAPK8IP3Q9UPT6 1336 aa24.88■■□□□ 1.57
CCDC88B-206ENST00000473405 CNBD1Q8NA66 436 aa24.88■■□□□ 1.57
CCDC88B-206ENST00000473405 NUP98P52948 1817 aa24.87■■□□□ 1.57
CCDC88B-206ENST00000473405 SLX4Q8IY92 1834 aa24.87■■□□□ 1.57
CCDC88B-206ENST00000473405 PDE6BP35913 854 aa24.87■■□□□ 1.57
CCDC88B-206ENST00000473405 PRELPP51888 382 aa24.87■■□□□ 1.57
CCDC88B-206ENST00000473405 DDX10Q13206 875 aaKnown RBP24.87■■□□□ 1.57
CCDC88B-206ENST00000473405 CLEC4GQ6UXB4 293 aa24.87■■□□□ 1.57
CCDC88B-206ENST00000473405 PNISRQ8TF01 805 aaKnown RBP24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 152.6 ms