RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 USPL1Q5W0Q7 1092 aa18.19■□□□□ 0.5
CHD3-209ENST00000473376 ZNF790Q6PG37 636 aa18.19■□□□□ 0.5
CHD3-209ENST00000473376 U2SURPO15042 1029 aaKnown RBP18.18■□□□□ 0.5
CHD3-209ENST00000473376 EIF5P55010 431 aaKnown RBP18.18■□□□□ 0.5
CHD3-209ENST00000473376 ARHGAP27Q6ZUM4 889 aa18.18■□□□□ 0.5
CHD3-209ENST00000473376 IL17REQ8NFR9 667 aa18.18■□□□□ 0.5
CHD3-209ENST00000473376 PDZRN3Q9UPQ7 1066 aa18.18■□□□□ 0.5
CHD3-209ENST00000473376 NUDCQ9Y266 331 aa18.18■□□□□ 0.5
CHD3-209ENST00000473376 ZBTB1Q9Y2K1 713 aa18.18■□□□□ 0.5
CHD3-209ENST00000473376 KIF3CO14782 793 aa18.17■□□□□ 0.5
CHD3-209ENST00000473376 HSPA6P17066 643 aa18.17■□□□□ 0.5
CHD3-209ENST00000473376 WWC3Q9ULE0 1092 aa18.17■□□□□ 0.5
CHD3-209ENST00000473376 BRCA1P38398 1863 aaKnown RBP18.17■□□□□ 0.5
CHD3-209ENST00000473376 UBR2Q8IWV8 1755 aa18.17■□□□□ 0.5
CHD3-209ENST00000473376 NFIXQ14938 502 aa18.16■□□□□ 0.5
CHD3-209ENST00000473376 N4BP2Q86UW6 1770 aaPredicted RBP18.16■□□□□ 0.5
CHD3-209ENST00000473376 HEG1Q9ULI3 1381 aa18.16■□□□□ 0.5
CHD3-209ENST00000473376 ARFGEF1Q9Y6D6 1849 aa18.15■□□□□ 0.5
CHD3-209ENST00000473376 ZNF496Q96IT1 587 aaPredicted RBP18.15■□□□□ 0.5
CHD3-209ENST00000473376 FMNL2Q96PY5 1086 aa18.15■□□□□ 0.5
CHD3-209ENST00000473376 RSPH6AQ9H0K4 717 aa18.15■□□□□ 0.5
CHD3-209ENST00000473376 ZC3H4Q9UPT8 1303 aaKnown RBP18.15■□□□□ 0.5
CHD3-209ENST00000473376 TOMM70O94826 608 aa18.14■□□□□ 0.49
CHD3-209ENST00000473376 IL6STP40189 918 aaPredicted RBP18.14■□□□□ 0.49
CHD3-209ENST00000473376 BCL2L12Q9HB09 334 aa18.14■□□□□ 0.49
CHD3-209ENST00000473376 NRXN2Q9P2S2 1712 aa18.13■□□□□ 0.49
CHD3-209ENST00000473376 RGL2O15211 777 aa18.13■□□□□ 0.49
CHD3-209ENST00000473376 HTATSF1O43719 755 aaKnown RBP18.13■□□□□ 0.49
CHD3-209ENST00000473376 SERPINB2P05120 415 aa18.13■□□□□ 0.49
CHD3-209ENST00000473376 ZNF526Q8TF50 670 aaPredicted RBP18.13■□□□□ 0.49
CHD3-209ENST00000473376 VIRMAQ69YN4 1812 aaKnown RBP18.12■□□□□ 0.49
CHD3-209ENST00000473376 CANXP27824 592 aaKnown RBP18.11■□□□□ 0.49
CHD3-209ENST00000473376 PRKAR2BP31323 418 aa18.11■□□□□ 0.49
CHD3-209ENST00000473376 C9orf131Q5VYM1 1079 aa18.11■□□□□ 0.49
CHD3-209ENST00000473376 PHACTR3Q96KR7 559 aa18.11■□□□□ 0.49
CHD3-209ENST00000473376 KDM2BQ8NHM5 1336 aa18.1■□□□□ 0.49
CHD3-209ENST00000473376 PPP2R1AP30153 589 aa18.1■□□□□ 0.49
CHD3-209ENST00000473376 CHRNA5P30532 468 aa18.1■□□□□ 0.49
CHD3-209ENST00000473376 CEP350Q5VT06 3117 aa18.1■□□□□ 0.49
CHD3-209ENST00000473376 BTBD11A6QL63 1104 aa18.09■□□□□ 0.49
CHD3-209ENST00000473376 NPM2Q86SE8 214 aaKnown RBP18.09■□□□□ 0.49
CHD3-209ENST00000473376 TTLL6Q8N841 843 aa18.09■□□□□ 0.49
CHD3-209ENST00000473376 BRIP1Q9BX63 1249 aa18.09■□□□□ 0.49
CHD3-209ENST00000473376 SIPA1L3O60292 1781 aaPredicted RBP18.09■□□□□ 0.49
CHD3-209ENST00000473376 H0YIN7 160 aa18.08■□□□□ 0.48
CHD3-209ENST00000473376 PDE6BP35913 854 aa18.08■□□□□ 0.48
CHD3-209ENST00000473376 APLP1P51693 650 aa18.08■□□□□ 0.48
CHD3-209ENST00000473376 CLEC4GQ6UXB4 293 aa18.08■□□□□ 0.48
CHD3-209ENST00000473376 RBM46Q8TBY0 533 aaKnown RBP18.08■□□□□ 0.48
CHD3-209ENST00000473376 RTF1Q92541 710 aaKnown RBP18.08■□□□□ 0.48
CHD3-209ENST00000473376 CARMIL3Q8ND23 1372 aa18.07■□□□□ 0.48
CHD3-209ENST00000473376 U2AF1L5P0DN76 240 aaPredicted RBP18.07■□□□□ 0.48
CHD3-209ENST00000473376 U2AF1Q01081 240 aaKnown RBP eCLIP18.07■□□□□ 0.48
CHD3-209ENST00000473376 FSTL1Q12841 308 aa18.06■□□□□ 0.48
CHD3-209ENST00000473376 RNF181Q9P0P0 153 aa18.06■□□□□ 0.48
CHD3-209ENST00000473376 SNRPA1P09661 255 aaKnown RBP18.05■□□□□ 0.48
CHD3-209ENST00000473376 LMNB1P20700 586 aa18.05■□□□□ 0.48
CHD3-209ENST00000473376 C2CD5Q86YS7 1000 aa18.05■□□□□ 0.48
CHD3-209ENST00000473376 TBC1D9BQ66K14 1250 aa18.04■□□□□ 0.48
CHD3-209ENST00000473376 SETDB2Q96T68 719 aa18.04■□□□□ 0.48
CHD3-209ENST00000473376 NMRK2Q9NPI5 230 aa18.04■□□□□ 0.48
CHD3-209ENST00000473376 AFDNP55196 1824 aaKnown RBP18.04■□□□□ 0.48
CHD3-209ENST00000473376 CAMTA2O94983 1202 aa18.03■□□□□ 0.48
CHD3-209ENST00000473376 C16orf71Q8IYS4 520 aaPredicted RBP18.03■□□□□ 0.48
CHD3-209ENST00000473376 DLEC1Q9Y238 1755 aa18.03■□□□□ 0.48
CHD3-209ENST00000473376 A1BGP04217 495 aa18.02■□□□□ 0.48
CHD3-209ENST00000473376 NEFMP07197 916 aa18.02■□□□□ 0.48
CHD3-209ENST00000473376 TAF7Q15545 349 aaPredicted RBP18.02■□□□□ 0.48
CHD3-209ENST00000473376 PRR5LQ6MZQ0 368 aa18.02■□□□□ 0.48
CHD3-209ENST00000473376 PNNQ9H307 717 aaKnown RBP18.02■□□□□ 0.48
CHD3-209ENST00000473376 TBC1D2BQ9UPU7 963 aa18.02■□□□□ 0.48
CHD3-209ENST00000473376 ZNF652Q9Y2D9 606 aa18.02■□□□□ 0.48
CHD3-209ENST00000473376 USP16Q9Y5T5 823 aa18.02■□□□□ 0.48
CHD3-209ENST00000473376 SCN7AQ01118 1682 aa18.02■□□□□ 0.47
CHD3-209ENST00000473376 CNGB1Q14028 1251 aaPredicted RBP18.01■□□□□ 0.47
CHD3-209ENST00000473376 DZIP3Q86Y13 1208 aaKnown RBP18.01■□□□□ 0.47
CHD3-209ENST00000473376 PNISRQ8TF01 805 aaKnown RBP18.01■□□□□ 0.47
CHD3-209ENST00000473376 LTBP3Q9NS15 1303 aa18■□□□□ 0.47
CHD3-209ENST00000473376 GLTPD2A6NH11 291 aa18■□□□□ 0.47
CHD3-209ENST00000473376 KCNQ3O43525 872 aa18■□□□□ 0.47
CHD3-209ENST00000473376 SOGA3Q5TF21 947 aa18■□□□□ 0.47
CHD3-209ENST00000473376 STYK1Q6J9G0 422 aa18■□□□□ 0.47
CHD3-209ENST00000473376 BICDL1Q6ZP65 573 aa18■□□□□ 0.47
CHD3-209ENST00000473376 CNBD1Q8NA66 436 aa18■□□□□ 0.47
CHD3-209ENST00000473376 CNKSR1Q969H4 720 aa18■□□□□ 0.47
CHD3-209ENST00000473376 SBF1O95248 1867 aa17.99■□□□□ 0.47
CHD3-209ENST00000473376 ST5P78524 1137 aa17.99■□□□□ 0.47
CHD3-209ENST00000473376 MCM10Q7L590 875 aa17.99■□□□□ 0.47
CHD3-209ENST00000473376 KLRG2A4D1S0 409 aaPredicted RBP17.98■□□□□ 0.47
CHD3-209ENST00000473376 DNAJC5GQ8N7S2 189 aa17.98■□□□□ 0.47
CHD3-209ENST00000473376 ZNF330Q9Y3S2 320 aaPredicted RBP17.98■□□□□ 0.47
CHD3-209ENST00000473376 NFKBIEO00221 500 aa17.97■□□□□ 0.47
CHD3-209ENST00000473376 SRGNP10124 158 aa17.97■□□□□ 0.47
CHD3-209ENST00000473376 VEGFAP15692 232 aaPredicted RBP17.97■□□□□ 0.47
CHD3-209ENST00000473376 TNRC6CQ9HCJ0 1690 aaKnown RBP17.96■□□□□ 0.47
CHD3-209ENST00000473376 DPY19L2Q6NUT2 758 aa17.96■□□□□ 0.47
CHD3-209ENST00000473376 TPTE2Q6XPS3 522 aa17.96■□□□□ 0.47
CHD3-209ENST00000473376 SMC1BQ8NDV3 1235 aa17.96■□□□□ 0.47
CHD3-209ENST00000473376 ZNF622Q969S3 477 aaKnown RBP eCLIP17.96■□□□□ 0.475e-8■■□□□ 12.2
CHD3-209ENST00000473376 MASTLQ96GX5 879 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms