RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 HS1BP3Q53T59 392 aa25.65■■□□□ 1.7
COL18A1-207ENST00000473212 NBPF7P0C2Y1 421 aaPredicted RBP25.65■■□□□ 1.7
COL18A1-207ENST00000473212 PPP1R42Q7Z4L9 355 aa25.65■■□□□ 1.7
COL18A1-207ENST00000473212 MARF1Q9Y4F3 1742 aaKnown RBP25.64■■□□□ 1.69
COL18A1-207ENST00000473212 LARP6Q9BRS8 491 aaKnown RBP25.64■■□□□ 1.69
COL18A1-207ENST00000473212 SURF6O75683 361 aaKnown RBP25.63■■□□□ 1.69
COL18A1-207ENST00000473212 NOL7Q9UMY1 257 aaKnown RBP25.63■■□□□ 1.69
COL18A1-207ENST00000473212 HTATSF1O43719 755 aaKnown RBP25.63■■□□□ 1.69
COL18A1-207ENST00000473212 GDPD2Q9HCC8 539 aa25.63■■□□□ 1.69
COL18A1-207ENST00000473212 STAP2Q9UGK3 403 aa25.63■■□□□ 1.69
COL18A1-207ENST00000473212 MBD3O95983 291 aa25.62■■□□□ 1.69
COL18A1-207ENST00000473212 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.62■■□□□ 1.69
COL18A1-207ENST00000473212 ANAPC15P60006 121 aa25.62■■□□□ 1.69
COL18A1-207ENST00000473212 SOS1Q07889 1333 aaPredicted RBP25.61■■□□□ 1.69
COL18A1-207ENST00000473212 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.61■■□□□ 1.69
COL18A1-207ENST00000473212 GLIPR1L2Q4G1C9 344 aa25.61■■□□□ 1.69
COL18A1-207ENST00000473212 CHPF2Q9P2E5 772 aa25.61■■□□□ 1.69
COL18A1-207ENST00000473212 SSH3Q8TE77 659 aa25.6■■□□□ 1.69
COL18A1-207ENST00000473212 NBPF6Q5VWK0 638 aa25.6■■□□□ 1.69
COL18A1-207ENST00000473212 RNF214Q8ND24 703 aa25.6■■□□□ 1.69
COL18A1-207ENST00000473212 INTS4Q96HW7 963 aaKnown RBP25.6■■□□□ 1.69
COL18A1-207ENST00000473212 NBPF4Q96M43 638 aa25.6■■□□□ 1.69
COL18A1-207ENST00000473212 SRGAP3O43295 1099 aa25.59■■□□□ 1.69
COL18A1-207ENST00000473212 TPRNQ4KMQ1 711 aa25.58■■□□□ 1.69
COL18A1-207ENST00000473212 PI4K2BQ8TCG2 481 aa25.58■■□□□ 1.68
COL18A1-207ENST00000473212 SRCIN1Q9C0H9 1055 aa25.58■■□□□ 1.68
COL18A1-207ENST00000473212 PI4KAP2A4QPH2 592 aa25.57■■□□□ 1.68
COL18A1-207ENST00000473212 PI4KAP1Q8N8J0 262 aa25.57■■□□□ 1.68
COL18A1-207ENST00000473212 RHPN1Q8TCX5 695 aa25.57■■□□□ 1.68
COL18A1-207ENST00000473212 LRRC59Q96AG4 307 aaKnown RBP25.57■■□□□ 1.68
COL18A1-207ENST00000473212 XPCQ01831 940 aaPredicted RBP25.57■■□□□ 1.68
COL18A1-207ENST00000473212 ARHGAP23Q9P227 1491 aa25.56■■□□□ 1.68
COL18A1-207ENST00000473212 ZNF500O60304 480 aaPredicted RBP25.56■■□□□ 1.68
COL18A1-207ENST00000473212 SLIT1O75093 1534 aa25.55■■□□□ 1.68
COL18A1-207ENST00000473212 EIF4A1P60842 406 aaKnown RBP25.55■■□□□ 1.68
COL18A1-207ENST00000473212 CPA1P15085 419 aa25.55■■□□□ 1.68
COL18A1-207ENST00000473212 ZKSCAN5Q9Y2L8 839 aa25.55■■□□□ 1.68
COL18A1-207ENST00000473212 R3HCC1Q9Y3T6 440 aaKnown RBP25.55■■□□□ 1.68
COL18A1-207ENST00000473212 GADD45BO75293 160 aaPredicted RBP25.54■■□□□ 1.68
COL18A1-207ENST00000473212 POLA2Q14181 598 aa25.54■■□□□ 1.68
COL18A1-207ENST00000473212 RASEFQ8IZ41 740 aa25.54■■□□□ 1.68
COL18A1-207ENST00000473212 CACNA1FO60840 1977 aa25.53■■□□□ 1.68
COL18A1-207ENST00000473212 MPRIPQ6WCQ1 1025 aa25.53■■□□□ 1.68
COL18A1-207ENST00000473212 SPG7Q9UQ90 795 aa25.53■■□□□ 1.68
COL18A1-207ENST00000473212 HSPA4P34932 840 aa25.52■■□□□ 1.68
COL18A1-207ENST00000473212 BEND3Q5T5X7 828 aa25.52■■□□□ 1.68
COL18A1-207ENST00000473212 IL17RAQ96F46 866 aa25.52■■□□□ 1.68
COL18A1-207ENST00000473212 TSPY26PQ9H489 355 aa25.52■■□□□ 1.68
COL18A1-207ENST00000473212 TCHHQ07283 1943 aa25.52■■□□□ 1.68
COL18A1-207ENST00000473212 PRAMEF22A3QJZ6 481 aa25.51■■□□□ 1.67
COL18A1-207ENST00000473212 TRHP20396 242 aaPredicted RBP25.51■■□□□ 1.67
COL18A1-207ENST00000473212 CWC27Q6UX04 472 aaKnown RBP25.51■■□□□ 1.67
COL18A1-207ENST00000473212 CCDC39Q9UFE4 941 aa25.51■■□□□ 1.67
COL18A1-207ENST00000473212 AOX1Q06278 1338 aa25.5■■□□□ 1.67
COL18A1-207ENST00000473212 CEMIPQ8WUJ3 1361 aa25.5■■□□□ 1.67
COL18A1-207ENST00000473212 PROSER3Q2NL68 480 aa25.5■■□□□ 1.67
COL18A1-207ENST00000473212 THEMISQ8N1K5 641 aaPredicted RBP25.5■■□□□ 1.67
COL18A1-207ENST00000473212 DNAAF4Q8WXU2 420 aa25.5■■□□□ 1.67
COL18A1-207ENST00000473212 PXDNLA1KZ92 1463 aa25.5■■□□□ 1.67
COL18A1-207ENST00000473212 USP48Q86UV5 1035 aa25.5■■□□□ 1.67
COL18A1-207ENST00000473212 SYAP1Q96A49 352 aaPredicted RBP25.5■■□□□ 1.67
COL18A1-207ENST00000473212 SGSM2O43147 1006 aa25.49■■□□□ 1.67
COL18A1-207ENST00000473212 SNX14Q9Y5W7 946 aa25.49■■□□□ 1.67
COL18A1-207ENST00000473212 LTN1O94822 1766 aa25.49■■□□□ 1.67
COL18A1-207ENST00000473212 TERF1P54274 439 aa25.48■■□□□ 1.67
COL18A1-207ENST00000473212 DDX54Q8TDD1 881 aaKnown RBP25.48■■□□□ 1.67
COL18A1-207ENST00000473212 PHF8Q9UPP1 1060 aa25.48■■□□□ 1.67
COL18A1-207ENST00000473212 PA2G4Q9UQ80 394 aaKnown RBP25.48■■□□□ 1.67
COL18A1-207ENST00000473212 RGPD2P0DJD1 1756 aa25.48■■□□□ 1.67
COL18A1-207ENST00000473212 N4BP2Q86UW6 1770 aaPredicted RBP25.48■■□□□ 1.67
COL18A1-207ENST00000473212 WDR33Q9C0J8 1336 aaKnown RBP25.48■■□□□ 1.67
COL18A1-207ENST00000473212 ADCY9O60503 1353 aa25.48■■□□□ 1.67
COL18A1-207ENST00000473212 LSG1Q9H089 658 aaKnown RBP25.47■■□□□ 1.67
COL18A1-207ENST00000473212 IP6K1Q92551 441 aa25.47■■□□□ 1.67
COL18A1-207ENST00000473212 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.47■■□□□ 1.67
COL18A1-207ENST00000473212 RAD50Q92878 1312 aa25.47■■□□□ 1.67
COL18A1-207ENST00000473212 MCM5P33992 734 aa25.46■■□□□ 1.67
COL18A1-207ENST00000473212 VSIG10Q8N0Z9 540 aa25.46■■□□□ 1.67
COL18A1-207ENST00000473212 KIF1BPQ96EK5 621 aa25.46■■□□□ 1.67
COL18A1-207ENST00000473212 ANKARQ7Z5J8 1434 aa25.46■■□□□ 1.67
COL18A1-207ENST00000473212 RPAP1Q9BWH6 1393 aaPredicted RBP25.46■■□□□ 1.67
COL18A1-207ENST00000473212 BTBD11A6QL63 1104 aa25.45■■□□□ 1.67
COL18A1-207ENST00000473212 RAB11FIP3O75154 756 aa25.45■■□□□ 1.67
COL18A1-207ENST00000473212 LARGE1O95461 756 aa25.45■■□□□ 1.67
COL18A1-207ENST00000473212 ZNF530Q6P9A1 599 aaPredicted RBP25.45■■□□□ 1.67
COL18A1-207ENST00000473212 AK2P54819 239 aa25.45■■□□□ 1.66
COL18A1-207ENST00000473212 RBM10P98175 930 aaKnown RBP25.45■■□□□ 1.66
COL18A1-207ENST00000473212 PDCL3Q9H2J4 239 aa25.45■■□□□ 1.66
COL18A1-207ENST00000473212 BABAM1Q9NWV8 329 aa25.45■■□□□ 1.66
COL18A1-207ENST00000473212 OS9Q13438 667 aaPredicted RBP25.44■■□□□ 1.66
COL18A1-207ENST00000473212 CWF19L2Q2TBE0 894 aaKnown RBP25.44■■□□□ 1.66
COL18A1-207ENST00000473212 RUFY3Q7L099 469 aa25.44■■□□□ 1.66
COL18A1-207ENST00000473212 EPB41L2O43491 1005 aaKnown RBP25.43■■□□□ 1.66
COL18A1-207ENST00000473212 PTMAP06454 111 aaKnown RBP25.43■■□□□ 1.66
COL18A1-207ENST00000473212 TEFQ10587 303 aa25.43■■□□□ 1.66
COL18A1-207ENST00000473212 COL9A3Q14050 684 aaPredicted RBP25.43■■□□□ 1.66
COL18A1-207ENST00000473212 PTH1RQ03431 593 aa25.43■■□□□ 1.66
COL18A1-207ENST00000473212 MPNDQ8N594 471 aa25.43■■□□□ 1.66
COL18A1-207ENST00000473212 TTC14Q96N46 770 aa25.43■■□□□ 1.66
COL18A1-207ENST00000473212 PHF14O94880 888 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms