RNA–Protein interactions for RNA: ENST00000472892.1

VTI1A-203, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 1 (best)

Gene VTI1A, Length 1,247 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-203ENST00000472892 CEMIPQ8WUJ3 1361 aa20.47■□□□□ 0.87
VTI1A-203ENST00000472892 FCHSD2O94868 740 aa20.47■□□□□ 0.87
VTI1A-203ENST00000472892 U2AF1L5P0DN76 240 aaPredicted RBP20.47■□□□□ 0.87
VTI1A-203ENST00000472892 DPEP1P16444 411 aa20.47■□□□□ 0.87
VTI1A-203ENST00000472892 C1QTNF8P60827 252 aa20.47■□□□□ 0.87
VTI1A-203ENST00000472892 U2AF1Q01081 240 aaKnown RBP eCLIP20.47■□□□□ 0.87
VTI1A-203ENST00000472892 USPL1Q5W0Q7 1092 aa20.47■□□□□ 0.87
VTI1A-203ENST00000472892 NARFQ9UHQ1 456 aa20.47■□□□□ 0.87
VTI1A-203ENST00000472892 ZNF496Q96IT1 587 aaPredicted RBP20.46■□□□□ 0.87
VTI1A-203ENST00000472892 RNF216Q9NWF9 866 aaPredicted RBP20.46■□□□□ 0.87
VTI1A-203ENST00000472892 KIAA1551Q9HCM1 1747 aa20.46■□□□□ 0.87
VTI1A-203ENST00000472892 UBR2Q8IWV8 1755 aa20.45■□□□□ 0.86
VTI1A-203ENST00000472892 POLRMTO00411 1230 aaKnown RBP20.45■□□□□ 0.86
VTI1A-203ENST00000472892 STARD3NLO95772 234 aa20.45■□□□□ 0.86
VTI1A-203ENST00000472892 KCNA3P22001 575 aa20.45■□□□□ 0.86
VTI1A-203ENST00000472892 GIGYF1O75420 1035 aaPredicted RBP20.44■□□□□ 0.86
VTI1A-203ENST00000472892 TEX13AQ9BXU3 409 aaPredicted RBP20.44■□□□□ 0.86
VTI1A-203ENST00000472892 ADCY9O60503 1353 aa20.44■□□□□ 0.86
VTI1A-203ENST00000472892 COL15A1P39059 1388 aa20.44■□□□□ 0.86
VTI1A-203ENST00000472892 HEG1Q9ULI3 1381 aa20.44■□□□□ 0.86
VTI1A-203ENST00000472892 ATP10DQ9P241 1426 aa20.44■□□□□ 0.86
VTI1A-203ENST00000472892 CANXP27824 592 aaKnown RBP20.43■□□□□ 0.86
VTI1A-203ENST00000472892 EIF5P55010 431 aaKnown RBP20.43■□□□□ 0.86
VTI1A-203ENST00000472892 BCL2L12Q9HB09 334 aa20.43■□□□□ 0.86
VTI1A-203ENST00000472892 BCS1LQ9Y276 419 aa20.43■□□□□ 0.86
VTI1A-203ENST00000472892 N4BP2Q86UW6 1770 aaPredicted RBP20.42■□□□□ 0.86
VTI1A-203ENST00000472892 BTBD11A6QL63 1104 aa20.42■□□□□ 0.86
VTI1A-203ENST00000472892 FMNL2Q96PY5 1086 aa20.42■□□□□ 0.86
VTI1A-203ENST00000472892 NFIXQ14938 502 aa20.41■□□□□ 0.86
VTI1A-203ENST00000472892 SIPA1L3O60292 1781 aaPredicted RBP20.41■□□□□ 0.86
VTI1A-203ENST00000472892 A0A087WZG4 1122 aa20.4■□□□□ 0.86
VTI1A-203ENST00000472892 KCNQ3O43525 872 aa20.4■□□□□ 0.86
VTI1A-203ENST00000472892 HTATSF1O43719 755 aaKnown RBP20.4■□□□□ 0.86
VTI1A-203ENST00000472892 PIM2Q9P1W9 311 aa20.4■□□□□ 0.86
VTI1A-203ENST00000472892 RTF1Q92541 710 aaKnown RBP20.39■□□□□ 0.85
VTI1A-203ENST00000472892 GPBP1L1Q9HC44 474 aaPredicted RBP20.39■□□□□ 0.85
VTI1A-203ENST00000472892 NPM3O75607 178 aaKnown RBP20.38■□□□□ 0.85
VTI1A-203ENST00000472892 ARHGAP27Q6ZUM4 889 aa20.38■□□□□ 0.85
VTI1A-203ENST00000472892 MCM10Q7L590 875 aa20.38■□□□□ 0.85
VTI1A-203ENST00000472892 IL6STP40189 918 aaPredicted RBP20.37■□□□□ 0.85
VTI1A-203ENST00000472892 DALRD3Q5D0E6 543 aaKnown RBP20.37■□□□□ 0.85
VTI1A-203ENST00000472892 A1BGP04217 495 aa20.36■□□□□ 0.85
VTI1A-203ENST00000472892 SERPINB2P05120 415 aa20.36■□□□□ 0.85
VTI1A-203ENST00000472892 CHRNA5P30532 468 aa20.36■□□□□ 0.85
VTI1A-203ENST00000472892 DCTN1Q14203 1278 aa20.35■□□□□ 0.85
VTI1A-203ENST00000472892 USP16Q9Y5T5 823 aa20.35■□□□□ 0.85
VTI1A-203ENST00000472892 BRCA1P38398 1863 aaKnown RBP20.35■□□□□ 0.85
VTI1A-203ENST00000472892 ZNF526Q8TF50 670 aaPredicted RBP20.34■□□□□ 0.85
VTI1A-203ENST00000472892 TBC1D2BQ9UPU7 963 aa20.34■□□□□ 0.85
VTI1A-203ENST00000472892 SENP3-EIF4A1A0A087X0R7 540 aa20.33■□□□□ 0.85
VTI1A-203ENST00000472892 PLEKHF1Q96S99 279 aa20.33■□□□□ 0.85
VTI1A-203ENST00000472892 SNRPA1P09661 255 aaKnown RBP20.32■□□□□ 0.84
VTI1A-203ENST00000472892 TAF7Q15545 349 aaPredicted RBP20.32■□□□□ 0.84
VTI1A-203ENST00000472892 TBC1D9BQ66K14 1250 aa20.32■□□□□ 0.84
VTI1A-203ENST00000472892 BICDL1Q6ZP65 573 aa20.32■□□□□ 0.84
VTI1A-203ENST00000472892 ZNF330Q9Y3S2 320 aaPredicted RBP20.32■□□□□ 0.84
VTI1A-203ENST00000472892 NRXN2Q9P2S2 1712 aa20.32■□□□□ 0.84
VTI1A-203ENST00000472892 PRAMEF22A3QJZ6 481 aa20.31■□□□□ 0.84
VTI1A-203ENST00000472892 NEFMP07197 916 aa20.31■□□□□ 0.84
VTI1A-203ENST00000472892 AFDNP55196 1824 aaKnown RBP20.3■□□□□ 0.84
VTI1A-203ENST00000472892 NPM2Q86SE8 214 aaKnown RBP20.3■□□□□ 0.84
VTI1A-203ENST00000472892 ARFGEF1Q9Y6D6 1849 aa20.3■□□□□ 0.84
VTI1A-203ENST00000472892 CAMTA2O94983 1202 aa20.29■□□□□ 0.84
VTI1A-203ENST00000472892 RALBP1Q15311 655 aa20.29■□□□□ 0.84
VTI1A-203ENST00000472892 C9orf131Q5VYM1 1079 aa20.28■□□□□ 0.84
VTI1A-203ENST00000472892 PNNQ9H307 717 aaKnown RBP20.28■□□□□ 0.84
VTI1A-203ENST00000472892 MIS18AQ9NYP9 233 aa20.28■□□□□ 0.84
VTI1A-203ENST00000472892 KIF3CO14782 793 aa20.27■□□□□ 0.84
VTI1A-203ENST00000472892 NFE2L2Q16236 605 aa20.27■□□□□ 0.84
VTI1A-203ENST00000472892 DZIP3Q86Y13 1208 aaKnown RBP20.27■□□□□ 0.84
VTI1A-203ENST00000472892 C2CD5Q86YS7 1000 aa20.27■□□□□ 0.84
VTI1A-203ENST00000472892 CARMIL3Q8ND23 1372 aa20.26■□□□□ 0.83
VTI1A-203ENST00000472892 H0YIN7 160 aa20.26■□□□□ 0.83
VTI1A-203ENST00000472892 PIP4K2AP48426 406 aaPredicted RBP20.26■□□□□ 0.83
VTI1A-203ENST00000472892 TTLL6Q8N841 843 aa20.26■□□□□ 0.83
VTI1A-203ENST00000472892 PNISRQ8TF01 805 aaKnown RBP20.26■□□□□ 0.83
VTI1A-203ENST00000472892 SETDB2Q96T68 719 aa20.26■□□□□ 0.83
VTI1A-203ENST00000472892 BRIP1Q9BX63 1249 aa20.26■□□□□ 0.83
VTI1A-203ENST00000472892 NBPF26B4DH59 902 aa20.25■□□□□ 0.83
VTI1A-203ENST00000472892 PRR5LQ6MZQ0 368 aa20.25■□□□□ 0.83
VTI1A-203ENST00000472892 NBPF10Q6P3W6 841 aaKnown RBP20.25■□□□□ 0.83
VTI1A-203ENST00000472892 CLEC4GQ6UXB4 293 aa20.25■□□□□ 0.83
VTI1A-203ENST00000472892 NBPF15Q8N660 670 aa20.25■□□□□ 0.83
VTI1A-203ENST00000472892 PDZRN3Q9UPQ7 1066 aa20.25■□□□□ 0.83
VTI1A-203ENST00000472892 SCN7AQ01118 1682 aa20.24■□□□□ 0.83
VTI1A-203ENST00000472892 PDE6BP35913 854 aa20.24■□□□□ 0.83
VTI1A-203ENST00000472892 DDX10Q13206 875 aaKnown RBP20.24■□□□□ 0.83
VTI1A-203ENST00000472892 RGL2O15211 777 aa20.22■□□□□ 0.83
VTI1A-203ENST00000472892 CCDC24Q8N4L8 307 aa20.22■□□□□ 0.83
VTI1A-203ENST00000472892 RNF181Q9P0P0 153 aa20.22■□□□□ 0.83
VTI1A-203ENST00000472892 MAPK8IP3Q9UPT6 1336 aa20.22■□□□□ 0.83
VTI1A-203ENST00000472892 EIF4A1P60842 406 aaKnown RBP20.21■□□□□ 0.83
VTI1A-203ENST00000472892 CNBD1Q8NA66 436 aa20.21■□□□□ 0.83
VTI1A-203ENST00000472892 THUMPD2Q9BTF0 503 aaKnown RBP20.21■□□□□ 0.83
VTI1A-203ENST00000472892 ZNF652Q9Y2D9 606 aa20.2■□□□□ 0.82
VTI1A-203ENST00000472892 DLEC1Q9Y238 1755 aa20.2■□□□□ 0.82
VTI1A-203ENST00000472892 DLG5Q8TDM6 1919 aa20.19■□□□□ 0.82
VTI1A-203ENST00000472892 NMRK2Q9NPI5 230 aa20.19■□□□□ 0.82
VTI1A-203ENST00000472892 TOMM70O94826 608 aa20.18■□□□□ 0.82
VTI1A-203ENST00000472892 HSPA6P17066 643 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms