RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SIPA1L3O60292 1781 aaPredicted RBP26.51■■□□□ 1.83
COL9A3-210ENST00000472880 POLRMTO00411 1230 aaKnown RBP26.5■■□□□ 1.83
COL9A3-210ENST00000472880 NARFQ9UHQ1 456 aa26.5■■□□□ 1.83
COL9A3-210ENST00000472880 ARFGEF1Q9Y6D6 1849 aa26.49■■□□□ 1.83
COL9A3-210ENST00000472880 ARHGAP27Q6ZUM4 889 aa26.49■■□□□ 1.83
COL9A3-210ENST00000472880 IL17REQ8NFR9 667 aa26.49■■□□□ 1.83
COL9A3-210ENST00000472880 PIM2Q9P1W9 311 aa26.49■■□□□ 1.83
COL9A3-210ENST00000472880 STARD3NLO95772 234 aa26.48■■□□□ 1.83
COL9A3-210ENST00000472880 KCNA3P22001 575 aa26.48■■□□□ 1.83
COL9A3-210ENST00000472880 TM4SF1P30408 202 aa26.48■■□□□ 1.83
COL9A3-210ENST00000472880 PRKAR2BP31323 418 aa26.48■■□□□ 1.83
COL9A3-210ENST00000472880 NUDCQ9Y266 331 aa26.48■■□□□ 1.83
COL9A3-210ENST00000472880 CANXP27824 592 aaKnown RBP26.47■■□□□ 1.83
COL9A3-210ENST00000472880 ZNF790Q6PG37 636 aa26.47■■□□□ 1.83
COL9A3-210ENST00000472880 RSPH6AQ9H0K4 717 aa26.47■■□□□ 1.83
COL9A3-210ENST00000472880 HEG1Q9ULI3 1381 aa26.46■■□□□ 1.83
COL9A3-210ENST00000472880 ZNF496Q96IT1 587 aaPredicted RBP26.46■■□□□ 1.83
COL9A3-210ENST00000472880 NFIXQ14938 502 aa26.45■■□□□ 1.82
COL9A3-210ENST00000472880 DALRD3Q5D0E6 543 aaKnown RBP26.45■■□□□ 1.82
COL9A3-210ENST00000472880 CEMIPQ8WUJ3 1361 aa26.45■■□□□ 1.82
COL9A3-210ENST00000472880 AFDNP55196 1824 aaKnown RBP26.44■■□□□ 1.82
COL9A3-210ENST00000472880 PPP2R1AP30153 589 aa26.44■■□□□ 1.82
COL9A3-210ENST00000472880 PHACTR3Q96KR7 559 aa26.44■■□□□ 1.82
COL9A3-210ENST00000472880 NRXN2Q9P2S2 1712 aa26.43■■□□□ 1.82
COL9A3-210ENST00000472880 U2AF1L5P0DN76 240 aaPredicted RBP26.43■■□□□ 1.82
COL9A3-210ENST00000472880 CHRNA5P30532 468 aa26.43■■□□□ 1.82
COL9A3-210ENST00000472880 U2AF1Q01081 240 aaKnown RBP eCLIP26.43■■□□□ 1.82
COL9A3-210ENST00000472880 TEX13AQ9BXU3 409 aaPredicted RBP26.43■■□□□ 1.82
COL9A3-210ENST00000472880 A0A087WZG4 1122 aa26.42■■□□□ 1.82
COL9A3-210ENST00000472880 FMNL2Q96PY5 1086 aa26.42■■□□□ 1.82
COL9A3-210ENST00000472880 SCN7AQ01118 1682 aa26.41■■□□□ 1.82
COL9A3-210ENST00000472880 EIF5P55010 431 aaKnown RBP26.41■■□□□ 1.82
COL9A3-210ENST00000472880 BCL2L12Q9HB09 334 aa26.41■■□□□ 1.82
COL9A3-210ENST00000472880 BTBD11A6QL63 1104 aa26.39■■□□□ 1.82
COL9A3-210ENST00000472880 SERPINB2P05120 415 aa26.39■■□□□ 1.82
COL9A3-210ENST00000472880 ZNF330Q9Y3S2 320 aaPredicted RBP26.39■■□□□ 1.82
COL9A3-210ENST00000472880 RTF1Q92541 710 aaKnown RBP26.38■■□□□ 1.81
COL9A3-210ENST00000472880 KIF3CO14782 793 aa26.37■■□□□ 1.81
COL9A3-210ENST00000472880 C9orf131Q5VYM1 1079 aa26.37■■□□□ 1.81
COL9A3-210ENST00000472880 BICDL1Q6ZP65 573 aa26.37■■□□□ 1.81
COL9A3-210ENST00000472880 DLEC1Q9Y238 1755 aa26.37■■□□□ 1.81
COL9A3-210ENST00000472880 NPM2Q86SE8 214 aaKnown RBP26.36■■□□□ 1.81
COL9A3-210ENST00000472880 IL6STP40189 918 aaPredicted RBP26.35■■□□□ 1.81
COL9A3-210ENST00000472880 KCNQ3O43525 872 aa26.34■■□□□ 1.81
COL9A3-210ENST00000472880 CARMIL3Q8ND23 1372 aa26.33■■□□□ 1.81
COL9A3-210ENST00000472880 HSPA6P17066 643 aa26.33■■□□□ 1.81
COL9A3-210ENST00000472880 MCM10Q7L590 875 aa26.33■■□□□ 1.81
COL9A3-210ENST00000472880 TBC1D2BQ9UPU7 963 aa26.33■■□□□ 1.81
COL9A3-210ENST00000472880 A1BGP04217 495 aa26.32■■□□□ 1.8
COL9A3-210ENST00000472880 TBC1D9BQ66K14 1250 aa26.32■■□□□ 1.8
COL9A3-210ENST00000472880 RNF181Q9P0P0 153 aa26.32■■□□□ 1.8
COL9A3-210ENST00000472880 C2CD5Q86YS7 1000 aa26.31■■□□□ 1.8
COL9A3-210ENST00000472880 BCORQ6W2J9 1755 aa26.3■■□□□ 1.8
COL9A3-210ENST00000472880 H0YIN7 160 aa26.29■■□□□ 1.8
COL9A3-210ENST00000472880 NMRK2Q9NPI5 230 aa26.29■■□□□ 1.8
COL9A3-210ENST00000472880 HTATSF1O43719 755 aaKnown RBP26.28■■□□□ 1.8
COL9A3-210ENST00000472880 NEFMP07197 916 aa26.28■■□□□ 1.8
COL9A3-210ENST00000472880 DCTN1Q14203 1278 aa26.28■■□□□ 1.8
COL9A3-210ENST00000472880 TTLL6Q8N841 843 aa26.28■■□□□ 1.8
COL9A3-210ENST00000472880 TOMM70O94826 608 aa26.27■■□□□ 1.8
COL9A3-210ENST00000472880 SNRPA1P09661 255 aaKnown RBP26.27■■□□□ 1.8
COL9A3-210ENST00000472880 SBF1O95248 1867 aa26.27■■□□□ 1.8
COL9A3-210ENST00000472880 ANKRD31Q8N7Z5 1873 aa26.27■■□□□ 1.8
COL9A3-210ENST00000472880 KDM2BQ8NHM5 1336 aa26.26■■□□□ 1.79
COL9A3-210ENST00000472880 CAMTA2O94983 1202 aa26.26■■□□□ 1.79
COL9A3-210ENST00000472880 RASSF7Q02833 373 aa26.26■■□□□ 1.79
COL9A3-210ENST00000472880 DZIP3Q86Y13 1208 aaKnown RBP26.26■■□□□ 1.79
COL9A3-210ENST00000472880 USP16Q9Y5T5 823 aa26.26■■□□□ 1.79
COL9A3-210ENST00000472880 NPHP1O15259 732 aa26.25■■□□□ 1.79
COL9A3-210ENST00000472880 SETDB2Q96T68 719 aa26.25■■□□□ 1.79
COL9A3-210ENST00000472880 PRAMEF22A3QJZ6 481 aa26.24■■□□□ 1.79
COL9A3-210ENST00000472880 PDE6BP35913 854 aa26.24■■□□□ 1.79
COL9A3-210ENST00000472880 PIP4K2AP48426 406 aaPredicted RBP26.24■■□□□ 1.79
COL9A3-210ENST00000472880 PRR5LQ6MZQ0 368 aa26.24■■□□□ 1.79
COL9A3-210ENST00000472880 CNBD1Q8NA66 436 aa26.24■■□□□ 1.79
COL9A3-210ENST00000472880 BRIP1Q9BX63 1249 aa26.24■■□□□ 1.79
COL9A3-210ENST00000472880 PDZRN3Q9UPQ7 1066 aa26.24■■□□□ 1.79
COL9A3-210ENST00000472880 COL11A2P13942 1736 aaPredicted RBP26.24■■□□□ 1.79
COL9A3-210ENST00000472880 TNRC6CQ9HCJ0 1690 aaKnown RBP26.23■■□□□ 1.79
COL9A3-210ENST00000472880 CEP350Q5VT06 3117 aa26.23■■□□□ 1.79
COL9A3-210ENST00000472880 C16orf71Q8IYS4 520 aaPredicted RBP26.23■■□□□ 1.79
COL9A3-210ENST00000472880 ZC3H4Q9UPT8 1303 aaKnown RBP26.22■■□□□ 1.79
COL9A3-210ENST00000472880 LAMB4A4D0S4 1761 aa26.21■■□□□ 1.79
COL9A3-210ENST00000472880 LMNB1P20700 586 aa26.21■■□□□ 1.79
COL9A3-210ENST00000472880 ST5P78524 1137 aa26.21■■□□□ 1.79
COL9A3-210ENST00000472880 TAF7Q15545 349 aaPredicted RBP26.21■■□□□ 1.79
COL9A3-210ENST00000472880 CCDC24Q8N4L8 307 aa26.21■■□□□ 1.79
COL9A3-210ENST00000472880 ZNF622Q969S3 477 aaKnown RBP eCLIP26.21■■□□□ 1.79
COL9A3-210ENST00000472880 DLG5Q8TDM6 1919 aa26.21■■□□□ 1.79
COL9A3-210ENST00000472880 ZNF652Q9Y2D9 606 aa26.2■■□□□ 1.78
COL9A3-210ENST00000472880 TIAM2Q8IVF5 1701 aa26.19■■□□□ 1.78
COL9A3-210ENST00000472880 RBM46Q8TBY0 533 aaKnown RBP26.18■■□□□ 1.78
COL9A3-210ENST00000472880 KDM3BQ7LBC6 1761 aa26.18■■□□□ 1.78
COL9A3-210ENST00000472880 APLP1P51693 650 aa26.17■■□□□ 1.78
COL9A3-210ENST00000472880 CLEC4GQ6UXB4 293 aa26.17■■□□□ 1.78
COL9A3-210ENST00000472880 MAPK8IP3Q9UPT6 1336 aa26.16■■□□□ 1.78
COL9A3-210ENST00000472880 NFKBIEO00221 500 aa26.16■■□□□ 1.78
COL9A3-210ENST00000472880 PNISRQ8TF01 805 aaKnown RBP26.16■■□□□ 1.78
COL9A3-210ENST00000472880 PNNQ9H307 717 aaKnown RBP26.16■■□□□ 1.78
COL9A3-210ENST00000472880 MIS18AQ9NYP9 233 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms