RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ARHGAP27Q6ZUM4 889 aa21.03■□□□□ 0.96
CCDC88B-205ENST00000472524 PHACTR3Q96KR7 559 aa21.03■□□□□ 0.96
CCDC88B-205ENST00000472524 FCHSD2O94868 740 aa21.02■□□□□ 0.96
CCDC88B-205ENST00000472524 IL17REQ8NFR9 667 aa21.02■□□□□ 0.96
CCDC88B-205ENST00000472524 HSPA6P17066 643 aa21.01■□□□□ 0.95
CCDC88B-205ENST00000472524 TTC5Q8N0Z6 440 aa21.01■□□□□ 0.95
CCDC88B-205ENST00000472524 DLG5Q8TDM6 1919 aa21■□□□□ 0.95
CCDC88B-205ENST00000472524 CYP19A1P11511 503 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-205ENST00000472524 SOS1Q07889 1333 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-205ENST00000472524 POLRMTO00411 1230 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-205ENST00000472524 TM4SF1P30408 202 aa20.97■□□□□ 0.95
CCDC88B-205ENST00000472524 CHRNA5P30532 468 aa20.97■□□□□ 0.95
CCDC88B-205ENST00000472524 USPL1Q5W0Q7 1092 aa20.97■□□□□ 0.95
CCDC88B-205ENST00000472524 VSIG10Q8N0Z9 540 aa20.97■□□□□ 0.95
CCDC88B-205ENST00000472524 PIM2Q9P1W9 311 aa20.97■□□□□ 0.95
CCDC88B-205ENST00000472524 ZBTB1Q9Y2K1 713 aa20.97■□□□□ 0.95
CCDC88B-205ENST00000472524 BRCA1P38398 1863 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-205ENST00000472524 CEMIPQ8WUJ3 1361 aa20.96■□□□□ 0.95
CCDC88B-205ENST00000472524 AFDNP55196 1824 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-205ENST00000472524 ZPR1O75312 459 aa20.95■□□□□ 0.94
CCDC88B-205ENST00000472524 ZNF790Q6PG37 636 aa20.95■□□□□ 0.94
CCDC88B-205ENST00000472524 ZNF496Q96IT1 587 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-205ENST00000472524 COL15A1P39059 1388 aa20.95■□□□□ 0.94
CCDC88B-205ENST00000472524 DALRD3Q5D0E6 543 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-205ENST00000472524 C9orf131Q5VYM1 1079 aa20.94■□□□□ 0.94
CCDC88B-205ENST00000472524 NMRK2Q9NPI5 230 aa20.94■□□□□ 0.94
CCDC88B-205ENST00000472524 HEG1Q9ULI3 1381 aa20.94■□□□□ 0.94
CCDC88B-205ENST00000472524 CANXP27824 592 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-205ENST00000472524 RTF1Q92541 710 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-205ENST00000472524 BTBD11A6QL63 1104 aa20.92■□□□□ 0.94
CCDC88B-205ENST00000472524 STARD3NLO95772 234 aa20.92■□□□□ 0.94
CCDC88B-205ENST00000472524 NFIXQ14938 502 aa20.92■□□□□ 0.94
CCDC88B-205ENST00000472524 MCM10Q7L590 875 aa20.92■□□□□ 0.94
CCDC88B-205ENST00000472524 KCNQ3O43525 872 aa20.91■□□□□ 0.94
CCDC88B-205ENST00000472524 FMNL2Q96PY5 1086 aa20.91■□□□□ 0.94
CCDC88B-205ENST00000472524 BCL2L12Q9HB09 334 aa20.91■□□□□ 0.94
CCDC88B-205ENST00000472524 NARFQ9UHQ1 456 aa20.91■□□□□ 0.94
CCDC88B-205ENST00000472524 TOMM70O94826 608 aa20.9■□□□□ 0.94
CCDC88B-205ENST00000472524 DDX10Q13206 875 aaKnown RBP20.9■□□□□ 0.94
CCDC88B-205ENST00000472524 DCTN1Q14203 1278 aa20.9■□□□□ 0.94
CCDC88B-205ENST00000472524 NEFMP07197 916 aa20.89■□□□□ 0.93
CCDC88B-205ENST00000472524 SCN7AQ01118 1682 aa20.89■□□□□ 0.93
CCDC88B-205ENST00000472524 ARFGEF1Q9Y6D6 1849 aa20.88■□□□□ 0.93
CCDC88B-205ENST00000472524 TEX13AQ9BXU3 409 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-205ENST00000472524 RNF181Q9P0P0 153 aa20.88■□□□□ 0.93
CCDC88B-205ENST00000472524 ZNF330Q9Y3S2 320 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-205ENST00000472524 NRXN2Q9P2S2 1712 aa20.87■□□□□ 0.93
CCDC88B-205ENST00000472524 HTATSF1O43719 755 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-205ENST00000472524 SERPINB2P05120 415 aa20.85■□□□□ 0.93
CCDC88B-205ENST00000472524 APLP1P51693 650 aa20.85■□□□□ 0.93
CCDC88B-205ENST00000472524 EIF5P55010 431 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-205ENST00000472524 RALBP1Q15311 655 aa20.85■□□□□ 0.93
CCDC88B-205ENST00000472524 IFFO2Q5TF58 517 aa20.85■□□□□ 0.93
CCDC88B-205ENST00000472524 BCORQ6W2J9 1755 aa20.85■□□□□ 0.93
CCDC88B-205ENST00000472524 KDM3BQ7LBC6 1761 aa20.85■□□□□ 0.93
CCDC88B-205ENST00000472524 A0A087WZG4 1122 aa20.84■□□□□ 0.93
CCDC88B-205ENST00000472524 A1BGP04217 495 aa20.84■□□□□ 0.93
CCDC88B-205ENST00000472524 RASSF7Q02833 373 aa20.84■□□□□ 0.93
CCDC88B-205ENST00000472524 CARMIL3Q8ND23 1372 aa20.84■□□□□ 0.93
CCDC88B-205ENST00000472524 LAMB4A4D0S4 1761 aa20.83■□□□□ 0.93
CCDC88B-205ENST00000472524 BICDL1Q6ZP65 573 aa20.83■□□□□ 0.93
CCDC88B-205ENST00000472524 PLEKHF1Q96S99 279 aa20.83■□□□□ 0.93
CCDC88B-205ENST00000472524 MAPK8IP3Q9UPT6 1336 aa20.82■□□□□ 0.92
CCDC88B-205ENST00000472524 PRAMEF22A3QJZ6 481 aa20.82■□□□□ 0.92
CCDC88B-205ENST00000472524 IL6STP40189 918 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-205ENST00000472524 RBM46Q8TBY0 533 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-205ENST00000472524 TBC1D2BQ9UPU7 963 aa20.82■□□□□ 0.92
CCDC88B-205ENST00000472524 DLEC1Q9Y238 1755 aa20.82■□□□□ 0.92
CCDC88B-205ENST00000472524 KDM2BQ8NHM5 1336 aa20.81■□□□□ 0.92
CCDC88B-205ENST00000472524 PIP4K2AP48426 406 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-205ENST00000472524 NFE2L2Q16236 605 aa20.81■□□□□ 0.92
CCDC88B-205ENST00000472524 NPM2Q86SE8 214 aaKnown RBP20.81■□□□□ 0.92
CCDC88B-205ENST00000472524 C2CD5Q86YS7 1000 aa20.81■□□□□ 0.92
CCDC88B-205ENST00000472524 C16orf71Q8IYS4 520 aaPredicted RBP20.81■□□□□ 0.92
CCDC88B-205ENST00000472524 DNAJC5GQ8N7S2 189 aa20.81■□□□□ 0.92
CCDC88B-205ENST00000472524 USP16Q9Y5T5 823 aa20.81■□□□□ 0.92
CCDC88B-205ENST00000472524 SNRPA1P09661 255 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-205ENST00000472524 PRELPP51888 382 aa20.8■□□□□ 0.92
CCDC88B-205ENST00000472524 TAF7Q15545 349 aaPredicted RBP20.8■□□□□ 0.92
CCDC88B-205ENST00000472524 TBC1D9BQ66K14 1250 aa20.8■□□□□ 0.92
CCDC88B-205ENST00000472524 PNNQ9H307 717 aaKnown RBP20.8■□□□□ 0.92
CCDC88B-205ENST00000472524 RRAGCQ9HB90 399 aa20.8■□□□□ 0.92
CCDC88B-205ENST00000472524 MIS18AQ9NYP9 233 aa20.8■□□□□ 0.92
CCDC88B-205ENST00000472524 ANKRD31Q8N7Z5 1873 aa20.79■□□□□ 0.92
CCDC88B-205ENST00000472524 TTLL6Q8N841 843 aa20.79■□□□□ 0.92
CCDC88B-205ENST00000472524 MYBBP1AQ9BQG0 1328 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-205ENST00000472524 THUMPD2Q9BTF0 503 aaKnown RBP20.78■□□□□ 0.92
CCDC88B-205ENST00000472524 H0YIN7 160 aa20.77■□□□□ 0.92
CCDC88B-205ENST00000472524 HTRA3P83110 453 aa20.77■□□□□ 0.92
CCDC88B-205ENST00000472524 CCDC24Q8N4L8 307 aa20.77■□□□□ 0.92
CCDC88B-205ENST00000472524 SBF1O95248 1867 aa20.76■□□□□ 0.91
CCDC88B-205ENST00000472524 CACNA1SQ13698 1873 aa20.76■□□□□ 0.91
CCDC88B-205ENST00000472524 LMNB1P20700 586 aa20.76■□□□□ 0.91
CCDC88B-205ENST00000472524 DZIP3Q86Y13 1208 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-205ENST00000472524 CAMTA2O94983 1202 aa20.75■□□□□ 0.91
CCDC88B-205ENST00000472524 FSTL1Q12841 308 aa20.75■□□□□ 0.91
CCDC88B-205ENST00000472524 PNISRQ8TF01 805 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-205ENST00000472524 NFKBIEO00221 500 aa20.74■□□□□ 0.91
CCDC88B-205ENST00000472524 COL11A2P13942 1736 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-205ENST00000472524 CCDC88AQ3V6T2 1871 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms