RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 VEGFAP15692 232 aaPredicted RBP25.36■■□□□ 1.65
SHH-205ENST00000472308 C1orf141Q5JVX7 400 aa25.36■■□□□ 1.65
SHH-205ENST00000472308 NFIXQ14938 502 aa25.35■■□□□ 1.65
SHH-205ENST00000472308 DNAJC10Q8IXB1 793 aa25.35■■□□□ 1.65
SHH-205ENST00000472308 SCN11AQ9UI33 1791 aa25.34■■□□□ 1.65
SHH-205ENST00000472308 ZPR1O75312 459 aa25.34■■□□□ 1.65
SHH-205ENST00000472308 POTECB2RU33 542 aa25.32■■□□□ 1.64
SHH-205ENST00000472308 NFKBIEO00221 500 aa25.32■■□□□ 1.64
SHH-205ENST00000472308 BCL2L12Q9HB09 334 aa25.32■■□□□ 1.64
SHH-205ENST00000472308 CARMIL3Q8ND23 1372 aa25.31■■□□□ 1.64
SHH-205ENST00000472308 COL15A1P39059 1388 aa25.31■■□□□ 1.64
SHH-205ENST00000472308 CYP19A1P11511 503 aaPredicted RBP25.3■■□□□ 1.64
SHH-205ENST00000472308 NARFQ9UHQ1 456 aa25.3■■□□□ 1.64
SHH-205ENST00000472308 MRC1P22897 1456 aa25.29■■□□□ 1.64
SHH-205ENST00000472308 SULT6B1Q6IMI4 303 aa25.29■■□□□ 1.64
SHH-205ENST00000472308 TTLL6Q8N841 843 aa25.29■■□□□ 1.64
SHH-205ENST00000472308 SERPINB2P05120 415 aa25.28■■□□□ 1.64
SHH-205ENST00000472308 POLR3GLQ9BT43 218 aa25.28■■□□□ 1.64
SHH-205ENST00000472308 ZBTB1Q9Y2K1 713 aa25.28■■□□□ 1.64
SHH-205ENST00000472308 C2CD5Q86YS7 1000 aa25.27■■□□□ 1.64
SHH-205ENST00000472308 SLC52A2Q9HAB3 445 aa25.27■■□□□ 1.64
SHH-205ENST00000472308 CCDC88AQ3V6T2 1871 aa25.26■■□□□ 1.63
SHH-205ENST00000472308 SLC39A6Q13433 755 aa25.25■■□□□ 1.63
SHH-205ENST00000472308 LGR6Q9HBX8 967 aa25.25■■□□□ 1.63
SHH-205ENST00000472308 AKAP4Q5JQC9 854 aa25.24■■□□□ 1.63
SHH-205ENST00000472308 IL13P35225 146 aa25.23■■□□□ 1.63
SHH-205ENST00000472308 PANK3Q9H999 370 aa25.23■■□□□ 1.63
SHH-205ENST00000472308 H0YIN7 160 aa25.22■■□□□ 1.63
SHH-205ENST00000472308 ANKRD31Q8N7Z5 1873 aa25.21■■□□□ 1.63
SHH-205ENST00000472308 COL11A2P13942 1736 aaPredicted RBP25.2■■□□□ 1.63
SHH-205ENST00000472308 RNMTO43148 476 aaKnown RBP25.19■■□□□ 1.62
SHH-205ENST00000472308 CREBZFQ9NS37 354 aa25.19■■□□□ 1.62
SHH-205ENST00000472308 FER1L6Q2WGJ9 1857 aa25.18■■□□□ 1.62
SHH-205ENST00000472308 POTEIP0CG38 1075 aa25.18■■□□□ 1.62
SHH-205ENST00000472308 POTEJP0CG39 1038 aa25.18■■□□□ 1.62
SHH-205ENST00000472308 DPY19L2Q6NUT2 758 aa25.18■■□□□ 1.62
SHH-205ENST00000472308 MORC1Q86VD1 984 aa25.18■■□□□ 1.62
SHH-205ENST00000472308 MKRN1Q9UHC7 482 aaKnown RBP25.18■■□□□ 1.62
SHH-205ENST00000472308 UBR2Q8IWV8 1755 aa25.18■■□□□ 1.62
SHH-205ENST00000472308 BICDL1Q6ZP65 573 aa25.17■■□□□ 1.62
SHH-205ENST00000472308 DICER1Q9UPY3 1922 aaKnown RBP25.17■■□□□ 1.62
SHH-205ENST00000472308 VIRMAQ69YN4 1812 aaKnown RBP25.16■■□□□ 1.62
SHH-205ENST00000472308 C21orf2O43822 256 aa25.16■■□□□ 1.62
SHH-205ENST00000472308 CANXP27824 592 aaKnown RBP25.16■■□□□ 1.62
SHH-205ENST00000472308 ERFEQ4G0M1 354 aa25.16■■□□□ 1.62
SHH-205ENST00000472308 CHADLQ6NUI6 762 aa25.16■■□□□ 1.62
SHH-205ENST00000472308 VSIG10Q8N0Z9 540 aa25.16■■□□□ 1.62
SHH-205ENST00000472308 EIF5P55010 431 aaKnown RBP25.15■■□□□ 1.62
SHH-205ENST00000472308 ZNF219Q9P2Y4 722 aaPredicted RBP25.15■■□□□ 1.62
SHH-205ENST00000472308 SCN7AQ01118 1682 aa25.15■■□□□ 1.62
SHH-205ENST00000472308 TBC1D9BQ66K14 1250 aa25.14■■□□□ 1.62
SHH-205ENST00000472308 ZNF622Q969S3 477 aaKnown RBP eCLIP25.14■■□□□ 1.62
SHH-205ENST00000472308 LTBP3Q9NS15 1303 aa25.13■■□□□ 1.61
SHH-205ENST00000472308 FOXN1O15353 648 aa25.13■■□□□ 1.61
SHH-205ENST00000472308 CCDC24Q8N4L8 307 aa25.13■■□□□ 1.61
SHH-205ENST00000472308 BRIP1Q9BX63 1249 aa25.13■■□□□ 1.61
SHH-205ENST00000472308 PRR5LQ6MZQ0 368 aa25.12■■□□□ 1.61
SHH-205ENST00000472308 CNTNAP1P78357 1384 aa25.12■■□□□ 1.61
SHH-205ENST00000472308 DDNO94850 711 aaPredicted RBP25.11■■□□□ 1.61
SHH-205ENST00000472308 PDE6BP35913 854 aa25.1■■□□□ 1.61
SHH-205ENST00000472308 MTHFSDQ2M296 383 aaKnown RBP25.1■■□□□ 1.61
SHH-205ENST00000472308 TAOK3Q9H2K8 898 aa25.1■■□□□ 1.61
SHH-205ENST00000472308 PASKQ96RG2 1323 aa25.1■■□□□ 1.61
SHH-205ENST00000472308 HMOX1P09601 288 aa25.09■■□□□ 1.61
SHH-205ENST00000472308 TIMELESSQ9UNS1 1208 aa25.09■■□□□ 1.61
SHH-205ENST00000472308 PDZRN3Q9UPQ7 1066 aa25.09■■□□□ 1.61
SHH-205ENST00000472308 SLX4Q8IY92 1834 aa25.08■■□□□ 1.61
SHH-205ENST00000472308 A0A087WZG4 1122 aa25.07■■□□□ 1.6
SHH-205ENST00000472308 STARD3NLO95772 234 aa25.07■■□□□ 1.6
SHH-205ENST00000472308 PRDM10Q9NQV6 1147 aa25.07■■□□□ 1.6
SHH-205ENST00000472308 HSPA5P11021 654 aaKnown RBP25.05■■□□□ 1.6
SHH-205ENST00000472308 PRPF40BQ6NWY9 871 aaKnown RBP25.05■■□□□ 1.6
SHH-205ENST00000472308 ZNF496Q96IT1 587 aaPredicted RBP25.05■■□□□ 1.6
SHH-205ENST00000472308 TBC1D2BQ9UPU7 963 aa25.05■■□□□ 1.6
SHH-205ENST00000472308 ARFGEF2Q9Y6D5 1785 aa25.05■■□□□ 1.6
SHH-205ENST00000472308 L3MBTL3Q96JM7 780 aaPredicted RBP25.04■■□□□ 1.6
SHH-205ENST00000472308 CACNA1SQ13698 1873 aa25.03■■□□□ 1.6
SHH-205ENST00000472308 VEGFBP49765 207 aa25.03■■□□□ 1.6
SHH-205ENST00000472308 AMER1Q5JTC6 1135 aaPredicted RBP25.03■■□□□ 1.6
SHH-205ENST00000472308 STYK1Q6J9G0 422 aa25.03■■□□□ 1.6
SHH-205ENST00000472308 LDHDQ86WU2 507 aa25.03■■□□□ 1.6
SHH-205ENST00000472308 TAF1DQ9H5J8 278 aaPredicted RBP25.03■■□□□ 1.6
SHH-205ENST00000472308 HEG1Q9ULI3 1381 aa25.03■■□□□ 1.6
SHH-205ENST00000472308 SRGNP10124 158 aa25.02■■□□□ 1.6
SHH-205ENST00000472308 TTC5Q8N0Z6 440 aa25.02■■□□□ 1.6
SHH-205ENST00000472308 CNBD1Q8NA66 436 aa25.02■■□□□ 1.6
SHH-205ENST00000472308 CNKSR1Q969H4 720 aa25.02■■□□□ 1.6
SHH-205ENST00000472308 ZNF330Q9Y3S2 320 aaPredicted RBP25.02■■□□□ 1.6
SHH-205ENST00000472308 KNSTRNQ9Y448 316 aa25.02■■□□□ 1.6
SHH-205ENST00000472308 IQCA1LA6NCM1 817 aa25.01■■□□□ 1.59
SHH-205ENST00000472308 CAMTA2O94983 1202 aa25.01■■□□□ 1.59
SHH-205ENST00000472308 ITGBL1O95965 494 aaPredicted RBP25.01■■□□□ 1.59
SHH-205ENST00000472308 IL6STP40189 918 aaPredicted RBP25.01■■□□□ 1.59
SHH-205ENST00000472308 CTCFP49711 727 aaPredicted RBP25.01■■□□□ 1.59
SHH-205ENST00000472308 EIF4G2P78344 907 aaKnown RBP eCLIP25.01■■□□□ 1.59
SHH-205ENST00000472308 SCN4AP35499 1836 aa25■■□□□ 1.59
SHH-205ENST00000472308 C7orf43Q8WVR3 580 aa25■■□□□ 1.59
SHH-205ENST00000472308 SIPA1L3O60292 1781 aaPredicted RBP25■■□□□ 1.59
SHH-205ENST00000472308 ADAMTSL1Q8N6G6 1762 aa25■■□□□ 1.59
SHH-205ENST00000472308 ZNF790Q6PG37 636 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms