RNA–Protein interactions for RNA: ENST00000471250.5

U2AF1-208, Transcript of U2 small nuclear RNA auxiliary factor 1, human

TSL 2

Gene U2AF1, Length 1,676 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
U2AF1-208	ENST00000471250	TMOD3	Q9NYL9	352 aa		32.7	■■■□□ 2.83
U2AF1-208	ENST00000471250	KCP	Q6ZWJ8	1503 aa		32.7	■■■□□ 2.83
U2AF1-208	ENST00000471250	PDIA6	Q15084	440 aa		32.69	■■■□□ 2.82
U2AF1-208	ENST00000471250	PROSER3	Q2NL68	480 aa		32.69	■■■□□ 2.82
U2AF1-208	ENST00000471250	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.69	■■■□□ 2.82
U2AF1-208	ENST00000471250	ITGB4	P16144	1822 aa		32.69	■■■□□ 2.82
U2AF1-208	ENST00000471250	CCDC9	Q9Y3X0	531 aa	Known RBP	32.69	■■■□□ 2.82
U2AF1-208	ENST00000471250	USP16	Q9Y5T5	823 aa		32.68	■■■□□ 2.82
U2AF1-208	ENST00000471250	VPS72	Q15906	364 aa		32.67	■■■□□ 2.82
U2AF1-208	ENST00000471250	DDB1	Q16531	1140 aa		32.66	■■■□□ 2.82
U2AF1-208	ENST00000471250	MEIS3	Q99687	375 aa		32.66	■■■□□ 2.82
U2AF1-208	ENST00000471250	SMC5	Q8IY18	1101 aa		32.64	■■■□□ 2.82
U2AF1-208	ENST00000471250	DNAAF4	Q8WXU2	420 aa		32.64	■■■□□ 2.82
U2AF1-208	ENST00000471250	PIGB	Q92521	554 aa		32.64	■■■□□ 2.82
U2AF1-208	ENST00000471250	ADCY9	O60503	1353 aa		32.64	■■■□□ 2.82
U2AF1-208	ENST00000471250	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.64	■■■□□ 2.82
U2AF1-208	ENST00000471250	PI4KAP2	A4QPH2	592 aa		32.63	■■■□□ 2.81
U2AF1-208	ENST00000471250	PI4KAP1	Q8N8J0	262 aa		32.63	■■■□□ 2.81
U2AF1-208	ENST00000471250	SIRT2	Q8IXJ6	389 aa		32.62	■■■□□ 2.81
U2AF1-208	ENST00000471250	PDZRN3	Q9UPQ7	1066 aa		32.62	■■■□□ 2.81
U2AF1-208	ENST00000471250	KSR2	Q6VAB6	950 aa		32.61	■■■□□ 2.81
U2AF1-208	ENST00000471250	ATP10D	Q9P241	1426 aa		32.61	■■■□□ 2.81
U2AF1-208	ENST00000471250	BCL9	O00512	1426 aa		32.6	■■■□□ 2.81
U2AF1-208	ENST00000471250	RPAP2	Q8IXW5	612 aa	Predicted RBP	32.6	■■■□□ 2.81
U2AF1-208	ENST00000471250	ERBB4	Q15303	1308 aa		32.59	■■■□□ 2.81
U2AF1-208	ENST00000471250	GNAI3	P08754	354 aa		32.59	■■■□□ 2.81
U2AF1-208	ENST00000471250	SRCIN1	Q9C0H9	1055 aa		32.59	■■■□□ 2.81
U2AF1-208	ENST00000471250	DDX58	O95786	925 aa	Known RBP	32.59	■■■□□ 2.81
U2AF1-208	ENST00000471250	BEND3	Q5T5X7	828 aa		32.59	■■■□□ 2.81
U2AF1-208	ENST00000471250	ANKRD44	Q8N8A2	993 aa		32.59	■■■□□ 2.81
U2AF1-208	ENST00000471250	DOT1L	Q8TEK3	1739 aa		32.58	■■■□□ 2.81
U2AF1-208	ENST00000471250	LRP10	Q7Z4F1	713 aa		32.58	■■■□□ 2.81
U2AF1-208	ENST00000471250	USP21	Q9UK80	565 aa		32.58	■■■□□ 2.81
U2AF1-208	ENST00000471250	PTCD1	O75127	700 aa	Known RBP	32.57	■■■□□ 2.8
U2AF1-208	ENST00000471250	RGS3	P49796	1198 aa		32.57	■■■□□ 2.8
U2AF1-208	ENST00000471250	ATG3	Q9NT62	314 aa		32.57	■■■□□ 2.8
U2AF1-208	ENST00000471250	MYL6B	P14649	208 aa		32.56	■■■□□ 2.8
U2AF1-208	ENST00000471250	CEP85	Q6P2H3	762 aa		32.56	■■■□□ 2.8
U2AF1-208	ENST00000471250	MARCH10	Q8NA82	808 aa	Predicted RBP	32.56	■■■□□ 2.8
U2AF1-208	ENST00000471250	GCC1	Q96CN9	775 aa		32.56	■■■□□ 2.8
U2AF1-208	ENST00000471250	ASAP1	Q9ULH1	1129 aa		32.56	■■■□□ 2.8
U2AF1-208	ENST00000471250	MAP3K2	Q9Y2U5	619 aa		32.56	■■■□□ 2.8
U2AF1-208	ENST00000471250	GNAI2	P04899	355 aa		32.55	■■■□□ 2.8
U2AF1-208	ENST00000471250	MEX3C	Q5U5Q3	659 aa	Known RBP	32.54	■■■□□ 2.8
U2AF1-208	ENST00000471250	VSIG10	Q8N0Z9	540 aa		32.54	■■■□□ 2.8
U2AF1-208	ENST00000471250	USP44	Q9H0E7	712 aa		32.54	■■■□□ 2.8
U2AF1-208	ENST00000471250	AIMP1	Q12904	312 aa	Known RBP	32.53	■■■□□ 2.8
U2AF1-208	ENST00000471250	FAM98C	Q17RN3	349 aa	Known RBP	32.53	■■■□□ 2.8
U2AF1-208	ENST00000471250	XAGE3	Q8WTP9	111 aa		32.53	■■■□□ 2.8
U2AF1-208	ENST00000471250	COPS6	Q7L5N1	327 aa		32.52	■■■□□ 2.8
U2AF1-208	ENST00000471250	ALDH1L1	O75891	902 aa		32.51	■■■□□ 2.79
U2AF1-208	ENST00000471250	PRIM1	P49642	420 aa	Known RBP	32.51	■■■□□ 2.79
U2AF1-208	ENST00000471250	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.5	■■■□□ 2.79
U2AF1-208	ENST00000471250	NUCB1	Q02818	461 aa		32.5	■■■□□ 2.79
U2AF1-208	ENST00000471250	NBPF26	B4DH59	902 aa		32.49	■■■□□ 2.79
U2AF1-208	ENST00000471250	NBPF14	Q5TI25	921 aa		32.49	■■■□□ 2.79
U2AF1-208	ENST00000471250	NBPF10	Q6P3W6	841 aa	Known RBP	32.49	■■■□□ 2.79
U2AF1-208	ENST00000471250	NBPF15	Q8N660	670 aa		32.49	■■■□□ 2.79
U2AF1-208	ENST00000471250	UBTFL1	P0CB47	393 aa	Predicted RBP	32.48	■■■□□ 2.79
U2AF1-208	ENST00000471250	PIP4K2A	P48426	406 aa	Predicted RBP	32.48	■■■□□ 2.79
U2AF1-208	ENST00000471250	RIC3	Q7Z5B4	369 aa		32.48	■■■□□ 2.79
U2AF1-208	ENST00000471250	SYTL4	Q96C24	671 aa	Predicted RBP	32.48	■■■□□ 2.79
U2AF1-208	ENST00000471250	DCTPP1	Q9H773	170 aa		32.48	■■■□□ 2.79
U2AF1-208	ENST00000471250	RBM19	Q9Y4C8	960 aa	Known RBP	32.48	■■■□□ 2.79
U2AF1-208	ENST00000471250	KAT6B	Q8WYB5	2073 aa		32.47	■■■□□ 2.79
U2AF1-208	ENST00000471250	LINS1	Q8NG48	757 aa		32.46	■■■□□ 2.79
U2AF1-208	ENST00000471250	A1BG	P04217	495 aa		32.46	■■■□□ 2.79
U2AF1-208	ENST00000471250	ANKRD13D	Q6ZTN6	518 aa		32.46	■■■□□ 2.79
U2AF1-208	ENST00000471250	IBTK	Q9P2D0	1353 aa	Predicted RBP	32.45	■■■□□ 2.79
U2AF1-208	ENST00000471250	HMMR	O75330	724 aa		32.45	■■■□□ 2.79
U2AF1-208	ENST00000471250	RBM42	Q9BTD8	480 aa	Known RBP	32.45	■■■□□ 2.79
U2AF1-208	ENST00000471250	AFF2	P51816	1311 aa		32.45	■■■□□ 2.78
U2AF1-208	ENST00000471250	THSD7A	Q9UPZ6	1657 aa		32.45	■■■□□ 2.78
U2AF1-208	ENST00000471250	PDE4A	P27815	886 aa		32.44	■■■□□ 2.78
U2AF1-208	ENST00000471250	LRRFIP2	Q9Y608	721 aa	Known RBP	32.44	■■■□□ 2.78
U2AF1-208	ENST00000471250	ATP8B2	P98198	1209 aa		32.43	■■■□□ 2.78
U2AF1-208	ENST00000471250	CHD1L	Q86WJ1	897 aa		32.43	■■■□□ 2.78
U2AF1-208	ENST00000471250	DNAJC10	Q8IXB1	793 aa		32.43	■■■□□ 2.78
U2AF1-208	ENST00000471250	METTL22	Q9BUU2	404 aa	Predicted RBP	32.43	■■■□□ 2.78
U2AF1-208	ENST00000471250	ACSBG1	Q96GR2	724 aa		32.42	■■■□□ 2.78
U2AF1-208	ENST00000471250	ARFGEF2	Q9Y6D5	1785 aa		32.41	■■■□□ 2.78
U2AF1-208	ENST00000471250	ANKRD45	Q5TZF3	282 aa		32.41	■■■□□ 2.78
U2AF1-208	ENST00000471250	PLBD2	Q8NHP8	589 aa		32.41	■■■□□ 2.78
U2AF1-208	ENST00000471250	BACH2	Q9BYV9	841 aa		32.41	■■■□□ 2.78
U2AF1-208	ENST00000471250	NBPF7	P0C2Y1	421 aa	Predicted RBP	32.4	■■■□□ 2.78
U2AF1-208	ENST00000471250	NEXN	Q0ZGT2	675 aa		32.4	■■■□□ 2.78
U2AF1-208	ENST00000471250	ATRN	O75882	1429 aa		32.4	■■■□□ 2.78
U2AF1-208	ENST00000471250	CWF19L2	Q2TBE0	894 aa	Known RBP	32.4	■■■□□ 2.78
U2AF1-208	ENST00000471250	GJD4	Q96KN9	370 aa	Predicted RBP	32.4	■■■□□ 2.78
U2AF1-208	ENST00000471250	SLC4A9	Q96Q91	983 aa		32.4	■■■□□ 2.78
U2AF1-208	ENST00000471250	STARD3NL	O95772	234 aa		32.39	■■■□□ 2.78
U2AF1-208	ENST00000471250	IGKV5-2	P06315	115 aa		32.39	■■■□□ 2.78
U2AF1-208	ENST00000471250	LNPK	Q9C0E8	428 aa		32.38	■■■□□ 2.77
U2AF1-208	ENST00000471250	UTY	O14607	1347 aa		32.38	■■■□□ 2.77
U2AF1-208	ENST00000471250	MYD88	Q99836	296 aa		32.37	■■■□□ 2.77
U2AF1-208	ENST00000471250	C9orf78	Q9NZ63	289 aa	Predicted RBP	32.37	■■■□□ 2.77
U2AF1-208	ENST00000471250	TJP1	Q07157	1748 aa		32.37	■■■□□ 2.77
U2AF1-208	ENST00000471250	TRPC5	Q9UL62	973 aa	Predicted RBP	32.37	■■■□□ 2.77
U2AF1-208	ENST00000471250	HDAC5	Q9UQL6	1122 aa		32.37	■■■□□ 2.77
U2AF1-208	ENST00000471250	NEURL1B	A8MQ27	555 aa		32.36	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms