RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.59□□□□□ -1.19
PTPN4-209ENST00000469511 HOXC9P31274 260 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 CAMK2BQ13554 666 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 MPRIPQ6WCQ1 1025 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 ARHGAP27Q6ZUM4 889 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 LINC00116Q8NCU8 138 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 TMC1Q8TDI8 760 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 L3MBTL2Q969R5 705 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 DCBLD2Q96PD2 775 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 BCS1LQ9Y276 419 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 ARIH1Q9Y4X5 557 aaPredicted RBP7.59□□□□□ -1.19
PTPN4-209ENST00000469511 ARFGEF1Q9Y6D6 1849 aa7.59□□□□□ -1.19
PTPN4-209ENST00000469511 ITPK1Q13572 414 aa7.58□□□□□ -1.2
PTPN4-209ENST00000469511 RBM46Q8TBY0 533 aaKnown RBP7.58□□□□□ -1.2
PTPN4-209ENST00000469511 RRAGCQ9HB90 399 aa7.58□□□□□ -1.2
PTPN4-209ENST00000469511 MYH14Q7Z406 1995 aaKnown RBP7.57□□□□□ -1.2
PTPN4-209ENST00000469511 CYP27B1O15528 508 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 MMP10P09238 476 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 HSPA1AP0DMV8 641 aaKnown RBP7.57□□□□□ -1.2
PTPN4-209ENST00000469511 HSPA1BP0DMV9 641 aaKnown RBP7.57□□□□□ -1.2
PTPN4-209ENST00000469511 DPEP1P16444 411 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 PLCG2P16885 1265 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 KCNA3P22001 575 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 RRS1Q15050 365 aaKnown RBP7.57□□□□□ -1.2
PTPN4-209ENST00000469511 C9orf131Q5VYM1 1079 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 FLAD1Q8NFF5 587 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 PIGBQ92521 554 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 AK7Q96M32 723 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 SIN3AQ96ST3 1273 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 BOLA1Q9Y3E2 137 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 PCNTO95613 3336 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 A0A1W2PP64 1363 aa7.57□□□□□ -1.2
PTPN4-209ENST00000469511 SLC39A7Q92504 469 aa7.56□□□□□ -1.2
PTPN4-209ENST00000469511 EDC4Q6P2E9 1401 aaKnown RBP7.55□□□□□ -1.2
PTPN4-209ENST00000469511 FCHSD2O94868 740 aa7.55□□□□□ -1.2
PTPN4-209ENST00000469511 AMPHP49418 695 aa7.55□□□□□ -1.2
PTPN4-209ENST00000469511 PPP1R15BQ5SWA1 713 aa7.55□□□□□ -1.2
PTPN4-209ENST00000469511 L3MBTL3Q96JM7 780 aaPredicted RBP7.55□□□□□ -1.2
PTPN4-209ENST00000469511 ASAP1Q9ULH1 1129 aa7.55□□□□□ -1.2
PTPN4-209ENST00000469511 GNPATO15228 680 aa7.54□□□□□ -1.2
PTPN4-209ENST00000469511 SLC34A2O95436 690 aa7.54□□□□□ -1.2
PTPN4-209ENST00000469511 C7P10643 843 aa7.54□□□□□ -1.2
PTPN4-209ENST00000469511 HDGFL2Q7Z4V5 671 aaPredicted RBP7.54□□□□□ -1.2
PTPN4-209ENST00000469511 SLC4A9Q96Q91 983 aa7.54□□□□□ -1.2
PTPN4-209ENST00000469511 C4AP0C0L4 1744 aa7.54□□□□□ -1.2
PTPN4-209ENST00000469511 ROCK2O75116 1388 aaKnown RBP7.54□□□□□ -1.2
PTPN4-209ENST00000469511 TNRC6CQ9HCJ0 1690 aaKnown RBP7.54□□□□□ -1.2
PTPN4-209ENST00000469511 C10orf71Q711Q0 1435 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 LOC102724428A0A0B4J2F2 783 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 G3V3G9 751 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 SEC24BO95487 1268 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 TATP17735 454 aaPredicted RBP7.53□□□□□ -1.2
PTPN4-209ENST00000469511 SSFA2P28290 1259 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 SIK1P57059 783 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 FOXK1P85037 733 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 FSTL1Q12841 308 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 HSP90AB2PQ58FF8 381 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 C16orf71Q8IYS4 520 aaPredicted RBP7.53□□□□□ -1.2
PTPN4-209ENST00000469511 SP7Q8TDD2 431 aaPredicted RBP7.53□□□□□ -1.2
PTPN4-209ENST00000469511 TMC2Q8TDI7 906 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 RNF181Q9P0P0 153 aa7.53□□□□□ -1.2
PTPN4-209ENST00000469511 COLQQ9Y215 455 aaPredicted RBP7.53□□□□□ -1.2
PTPN4-209ENST00000469511 NSD3Q9BZ95 1437 aa7.52□□□□□ -1.2
PTPN4-209ENST00000469511 CHRNA5P30532 468 aa7.52□□□□□ -1.21
PTPN4-209ENST00000469511 TGFB2P61812 414 aa7.52□□□□□ -1.21
PTPN4-209ENST00000469511 DSG2Q14126 1118 aa7.52□□□□□ -1.21
PTPN4-209ENST00000469511 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.52□□□□□ -1.21
PTPN4-209ENST00000469511 RAPGEF4Q8WZA2 1011 aa7.52□□□□□ -1.21
PTPN4-209ENST00000469511 COL5A3P25940 1745 aaPredicted RBP7.52□□□□□ -1.21
PTPN4-209ENST00000469511 AFDNP55196 1824 aaKnown RBP7.51□□□□□ -1.21
PTPN4-209ENST00000469511 TESPA1A2RU30 521 aaPredicted RBP7.51□□□□□ -1.21
PTPN4-209ENST00000469511 POTEFA5A3E0 1075 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 POTECB2RU33 542 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 POTEIP0CG38 1075 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 GYS1P13807 737 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 ATP6V1AP38606 617 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 RASSF7Q02833 373 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 NEUROD1Q13562 356 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 SMARCC1Q92922 1105 aaPredicted RBP7.51□□□□□ -1.21
PTPN4-209ENST00000469511 COG3Q96JB2 828 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 GGNBP2Q9H3C7 697 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 ATG3Q9NT62 314 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 PCDH11XQ9BZA7 1347 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 PCDH11YQ9BZA8 1340 aa7.51□□□□□ -1.21
PTPN4-209ENST00000469511 TULP1O00294 542 aaPredicted RBP7.5□□□□□ -1.21
PTPN4-209ENST00000469511 TMF1P82094 1093 aa7.5□□□□□ -1.21
PTPN4-209ENST00000469511 DDR1Q08345 913 aa7.5□□□□□ -1.21
PTPN4-209ENST00000469511 DCAF5Q96JK2 942 aa7.5□□□□□ -1.21
PTPN4-209ENST00000469511 TERF2IPQ9NYB0 399 aa7.5□□□□□ -1.21
PTPN4-209ENST00000469511 SRP68Q9UHB9 627 aaKnown RBP7.5□□□□□ -1.21
PTPN4-209ENST00000469511 METRNQ9UJH8 293 aa7.5□□□□□ -1.21
PTPN4-209ENST00000469511 TIAM2Q8IVF5 1701 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 C2orf72A6NCS6 295 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 SEMA3EO15041 775 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 FYB1O15117 783 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 FOXN1O15353 648 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 TRAPPC3LQ5T215 181 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 SMC1BQ8NDV3 1235 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 CCDC87Q9NVE4 849 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 PIM2Q9P1W9 311 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms