RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 DDX54Q8TDD1 881 aaKnown RBP10.56□□□□□ -0.72
NPHP3-204ENST00000469232 TSPYL4Q9UJ04 414 aa10.56□□□□□ -0.72
NPHP3-204ENST00000469232 CCDC9Q9Y3X0 531 aaKnown RBP10.56□□□□□ -0.72
NPHP3-204ENST00000469232 CICQ96RK0 1608 aaPredicted RBP10.56□□□□□ -0.72
NPHP3-204ENST00000469232 KCPQ6ZWJ8 1503 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 RARSP54136 660 aaKnown RBP10.55□□□□□ -0.72
NPHP3-204ENST00000469232 ALDH1L2Q3SY69 923 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 PELP1Q8IZL8 1130 aaKnown RBP10.55□□□□□ -0.72
NPHP3-204ENST00000469232 TSPYL6Q8N831 410 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 NFATC2IPQ8NCF5 419 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 DOT1LQ8TEK3 1739 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 BTBD11A6QL63 1104 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 CABP4P57796 275 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 ZNF790Q6PG37 636 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 SEPT12Q8IYM1 358 aa10.55□□□□□ -0.72
NPHP3-204ENST00000469232 KCNQ3O43525 872 aa10.54□□□□□ -0.72
NPHP3-204ENST00000469232 IFNL1Q8IU54 200 aa10.54□□□□□ -0.72
NPHP3-204ENST00000469232 MIS18AQ9NYP9 233 aa10.54□□□□□ -0.72
NPHP3-204ENST00000469232 ZNF831Q5JPB2 1677 aa10.54□□□□□ -0.72
NPHP3-204ENST00000469232 NHSQ6T4R5 1651 aa10.54□□□□□ -0.72
NPHP3-204ENST00000469232 TWISTNBQ3B726 338 aaPredicted RBP10.53□□□□□ -0.72
NPHP3-204ENST00000469232 PIGBQ92521 554 aa10.53□□□□□ -0.72
NPHP3-204ENST00000469232 BMP2KQ9NSY1 1161 aaPredicted RBP10.53□□□□□ -0.72
NPHP3-204ENST00000469232 LAS1LQ9Y4W2 734 aaKnown RBP10.53□□□□□ -0.72
NPHP3-204ENST00000469232 BRWD3Q6RI45 1802 aa10.52□□□□□ -0.72
NPHP3-204ENST00000469232 SBF2Q86WG5 1849 aa10.52□□□□□ -0.72
NPHP3-204ENST00000469232 GIGYF1O75420 1035 aaPredicted RBP10.52□□□□□ -0.73
NPHP3-204ENST00000469232 TIE1P35590 1138 aa10.52□□□□□ -0.73
NPHP3-204ENST00000469232 CACNA1FO60840 1977 aa10.52□□□□□ -0.73
NPHP3-204ENST00000469232 KRT24Q2M2I5 525 aa10.51□□□□□ -0.73
NPHP3-204ENST00000469232 LHX8Q68G74 356 aa10.51□□□□□ -0.73
NPHP3-204ENST00000469232 POTEAQ6S8J7 498 aa10.51□□□□□ -0.73
NPHP3-204ENST00000469232 ILDR1Q86SU0 546 aaPredicted RBP10.51□□□□□ -0.73
NPHP3-204ENST00000469232 VSIG10Q8N0Z9 540 aa10.51□□□□□ -0.73
NPHP3-204ENST00000469232 SSH1Q8WYL5 1049 aa10.51□□□□□ -0.73
NPHP3-204ENST00000469232 CHMP4AQ9BY43 222 aa10.51□□□□□ -0.73
NPHP3-204ENST00000469232 TMOD3Q9NYL9 352 aa10.51□□□□□ -0.73
NPHP3-204ENST00000469232 PRIM1P49642 420 aaKnown RBP10.51□□□□□ -0.73
NPHP3-204ENST00000469232 ATN1P54259 1190 aaPredicted RBP10.51□□□□□ -0.73
NPHP3-204ENST00000469232 ZNF496Q96IT1 587 aaPredicted RBP10.51□□□□□ -0.73
NPHP3-204ENST00000469232 ATG3Q9NT62 314 aa10.51□□□□□ -0.73
NPHP3-204ENST00000469232 RGS12O14924 1447 aa10.5□□□□□ -0.73
NPHP3-204ENST00000469232 LAMB4A4D0S4 1761 aa10.5□□□□□ -0.73
NPHP3-204ENST00000469232 RXRBP28702 533 aa10.5□□□□□ -0.73
NPHP3-204ENST00000469232 RRP1P56182 461 aaKnown RBP10.5□□□□□ -0.73
NPHP3-204ENST00000469232 SLC39A6Q13433 755 aa10.5□□□□□ -0.73
NPHP3-204ENST00000469232 MRPL50Q8N5N7 158 aaKnown RBP10.5□□□□□ -0.73
NPHP3-204ENST00000469232 ARHGAP45Q92619 1136 aa10.5□□□□□ -0.73
NPHP3-204ENST00000469232 FMNL2Q96PY5 1086 aa10.5□□□□□ -0.73
NPHP3-204ENST00000469232 CIZ1Q9ULV3 898 aaPredicted RBP10.5□□□□□ -0.73
NPHP3-204ENST00000469232 SUPT16HQ9Y5B9 1047 aaKnown RBP10.5□□□□□ -0.73
NPHP3-204ENST00000469232 C5P01031 1676 aa10.49□□□□□ -0.73
NPHP3-204ENST00000469232 ERBB4Q15303 1308 aa10.49□□□□□ -0.73
NPHP3-204ENST00000469232 BCAR3O75815 825 aa10.48□□□□□ -0.73
NPHP3-204ENST00000469232 SNRPA1P09661 255 aaKnown RBP10.48□□□□□ -0.73
NPHP3-204ENST00000469232 KRT27Q7Z3Y8 459 aa10.48□□□□□ -0.73
NPHP3-204ENST00000469232 ASAP1Q9ULH1 1129 aa10.48□□□□□ -0.73
NPHP3-204ENST00000469232 RREB1Q92766 1687 aa10.48□□□□□ -0.73
NPHP3-204ENST00000469232 TTLL13PA6NNM8 815 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 PDE3AQ14432 1141 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 CCDC30Q5VVM6 783 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 FAM196AQ6ZSG2 479 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 LRP10Q7Z4F1 713 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 SMARCC1Q92922 1105 aaPredicted RBP10.47□□□□□ -0.73
NPHP3-204ENST00000469232 SLC4A9Q96Q91 983 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 TJP1Q07157 1748 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 KIF16BQ96L93 1317 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 BTAF1O14981 1849 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 ELL2O00472 640 aaPredicted RBP10.47□□□□□ -0.73
NPHP3-204ENST00000469232 KCNQ2O43526 872 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 CHRM1P11229 460 aaPredicted RBP10.47□□□□□ -0.73
NPHP3-204ENST00000469232 ERICH6BQ5W0A0 696 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 TTC5Q8N0Z6 440 aa10.47□□□□□ -0.73
NPHP3-204ENST00000469232 TEX13AQ9BXU3 409 aaPredicted RBP10.47□□□□□ -0.73
NPHP3-204ENST00000469232 BCL11BQ9C0K0 894 aaPredicted RBP10.47□□□□□ -0.73
NPHP3-204ENST00000469232 IBTKQ9P2D0 1353 aaPredicted RBP10.46□□□□□ -0.73
NPHP3-204ENST00000469232 LY75O60449 1722 aa10.46□□□□□ -0.73
NPHP3-204ENST00000469232 PDIA6Q15084 440 aa10.46□□□□□ -0.74
NPHP3-204ENST00000469232 SMC4Q9NTJ3 1288 aa10.46□□□□□ -0.74
NPHP3-204ENST00000469232 PCDHB8Q9UN66 801 aa10.46□□□□□ -0.74
NPHP3-204ENST00000469232 PRAMEF22A3QJZ6 481 aa10.45□□□□□ -0.74
NPHP3-204ENST00000469232 HDGFL1Q5TGJ6 251 aa10.45□□□□□ -0.74
NPHP3-204ENST00000469232 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.45□□□□□ -0.74
NPHP3-204ENST00000469232 SLC39A7Q92504 469 aa10.45□□□□□ -0.74
NPHP3-204ENST00000469232 DDX21Q9NR30 783 aaKnown RBP eCLIP10.45□□□□□ -0.74
NPHP3-204ENST00000469232 METRNQ9UJH8 293 aa10.45□□□□□ -0.74
NPHP3-204ENST00000469232 PTPRCP08575 1304 aa10.45□□□□□ -0.74
NPHP3-204ENST00000469232 ATF7IPQ6VMQ6 1270 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 ACSBG1Q96GR2 724 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 DBF4Q9UBU7 674 aaPredicted RBP10.44□□□□□ -0.74
NPHP3-204ENST00000469232 USP16Q9Y5T5 823 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 PALLDQ8WX93 1383 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 COL5A3P25940 1745 aaPredicted RBP10.44□□□□□ -0.74
NPHP3-204ENST00000469232 A0A0G2JS52 829 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 IPO8O15397 1037 aaKnown RBP10.44□□□□□ -0.74
NPHP3-204ENST00000469232 C7P10643 843 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 TRIM27P14373 513 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 MYT1Q01538 1121 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 ZKSCAN2Q63HK3 967 aa10.44□□□□□ -0.74
NPHP3-204ENST00000469232 PTF1AQ7RTS3 328 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms