RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 C10orf71Q711Q0 1435 aa25.37■■□□□ 1.65
COL7A1-207ENST00000467985 COL15A1P39059 1388 aa25.37■■□□□ 1.65
COL7A1-207ENST00000467985 BTBD11A6QL63 1104 aa25.37■■□□□ 1.65
COL7A1-207ENST00000467985 FKBP8Q14318 412 aa25.36■■□□□ 1.65
COL7A1-207ENST00000467985 ZBTB1Q9Y2K1 713 aa25.36■■□□□ 1.65
COL7A1-207ENST00000467985 PNNQ9H307 717 aaKnown RBP25.35■■□□□ 1.65
COL7A1-207ENST00000467985 NARFQ9UHQ1 456 aa25.35■■□□□ 1.65
COL7A1-207ENST00000467985 USPL1Q5W0Q7 1092 aa25.34■■□□□ 1.65
COL7A1-207ENST00000467985 PXDNLA1KZ92 1463 aa25.34■■□□□ 1.65
COL7A1-207ENST00000467985 A0A087WZG4 1122 aa25.33■■□□□ 1.65
COL7A1-207ENST00000467985 DDX10Q13206 875 aaKnown RBP25.33■■□□□ 1.65
COL7A1-207ENST00000467985 MCM10Q7L590 875 aa25.33■■□□□ 1.65
COL7A1-207ENST00000467985 CANXP27824 592 aaKnown RBP25.32■■□□□ 1.64
COL7A1-207ENST00000467985 TM4SF1P30408 202 aa25.31■■□□□ 1.64
COL7A1-207ENST00000467985 EIF5P55010 431 aaKnown RBP25.31■■□□□ 1.64
COL7A1-207ENST00000467985 KIAA1551Q9HCM1 1747 aa25.31■■□□□ 1.64
COL7A1-207ENST00000467985 DDR1Q08345 913 aa25.3■■□□□ 1.64
COL7A1-207ENST00000467985 N4BP2Q86UW6 1770 aaPredicted RBP25.28■■□□□ 1.64
COL7A1-207ENST00000467985 A0A0G2JLW4 131 aa25.28■■□□□ 1.64
COL7A1-207ENST00000467985 POLRMTO00411 1230 aaKnown RBP25.28■■□□□ 1.64
COL7A1-207ENST00000467985 IL6STP40189 918 aaPredicted RBP25.28■■□□□ 1.64
COL7A1-207ENST00000467985 NPM2Q86SE8 214 aaKnown RBP25.28■■□□□ 1.64
COL7A1-207ENST00000467985 PLEKHF1Q96S99 279 aa25.28■■□□□ 1.64
COL7A1-207ENST00000467985 MAPK8IP3Q9UPT6 1336 aa25.28■■□□□ 1.64
COL7A1-207ENST00000467985 KCNQ3O43525 872 aa25.27■■□□□ 1.64
COL7A1-207ENST00000467985 DCTN1Q14203 1278 aa25.27■■□□□ 1.64
COL7A1-207ENST00000467985 TAF7Q15545 349 aaPredicted RBP25.27■■□□□ 1.64
COL7A1-207ENST00000467985 WWC3Q9ULE0 1092 aa25.27■■□□□ 1.64
COL7A1-207ENST00000467985 DPEP1P16444 411 aa25.26■■□□□ 1.63
COL7A1-207ENST00000467985 NFE2L2Q16236 605 aa25.26■■□□□ 1.63
COL7A1-207ENST00000467985 SNRPA1P09661 255 aaKnown RBP25.25■■□□□ 1.63
COL7A1-207ENST00000467985 MYBBP1AQ9BQG0 1328 aaKnown RBP25.25■■□□□ 1.63
COL7A1-207ENST00000467985 DLG5Q8TDM6 1919 aa25.25■■□□□ 1.63
COL7A1-207ENST00000467985 NFIXQ14938 502 aa25.24■■□□□ 1.63
COL7A1-207ENST00000467985 PNISRQ8TF01 805 aaKnown RBP25.24■■□□□ 1.63
COL7A1-207ENST00000467985 BCL2L12Q9HB09 334 aa25.24■■□□□ 1.63
COL7A1-207ENST00000467985 A1BGP04217 495 aa25.23■■□□□ 1.63
COL7A1-207ENST00000467985 BCS1LQ9Y276 419 aa25.23■■□□□ 1.63
COL7A1-207ENST00000467985 PIM2Q9P1W9 311 aa25.22■■□□□ 1.63
COL7A1-207ENST00000467985 ZNF330Q9Y3S2 320 aaPredicted RBP25.22■■□□□ 1.63
COL7A1-207ENST00000467985 BRCA1P38398 1863 aaKnown RBP25.21■■□□□ 1.63
COL7A1-207ENST00000467985 SCN7AQ01118 1682 aa25.21■■□□□ 1.63
COL7A1-207ENST00000467985 USP16Q9Y5T5 823 aa25.21■■□□□ 1.63
COL7A1-207ENST00000467985 NRXN2Q9P2S2 1712 aa25.2■■□□□ 1.63
COL7A1-207ENST00000467985 KCNA3P22001 575 aa25.2■■□□□ 1.62
COL7A1-207ENST00000467985 AFDNP55196 1824 aaKnown RBP25.19■■□□□ 1.62
COL7A1-207ENST00000467985 SERPINB2P05120 415 aa25.19■■□□□ 1.62
COL7A1-207ENST00000467985 TBC1D2BQ9UPU7 963 aa25.19■■□□□ 1.62
COL7A1-207ENST00000467985 DALRD3Q5D0E6 543 aaKnown RBP25.18■■□□□ 1.62
COL7A1-207ENST00000467985 ADCY9O60503 1353 aa25.18■■□□□ 1.62
COL7A1-207ENST00000467985 ATP10DQ9P241 1426 aa25.17■■□□□ 1.62
COL7A1-207ENST00000467985 ARFGEF1Q9Y6D6 1849 aa25.16■■□□□ 1.62
COL7A1-207ENST00000467985 MIS18AQ9NYP9 233 aa25.16■■□□□ 1.62
COL7A1-207ENST00000467985 KDM3BQ7LBC6 1761 aa25.16■■□□□ 1.62
COL7A1-207ENST00000467985 PRAMEF22A3QJZ6 481 aa25.15■■□□□ 1.62
COL7A1-207ENST00000467985 CHRNA5P30532 468 aa25.15■■□□□ 1.62
COL7A1-207ENST00000467985 BICDL1Q6ZP65 573 aa25.15■■□□□ 1.62
COL7A1-207ENST00000467985 DZIP3Q86Y13 1208 aaKnown RBP25.15■■□□□ 1.62
COL7A1-207ENST00000467985 CARMIL3Q8ND23 1372 aa25.15■■□□□ 1.62
COL7A1-207ENST00000467985 GIGYF1O75420 1035 aaPredicted RBP25.14■■□□□ 1.62
COL7A1-207ENST00000467985 CAMTA2O94983 1202 aa25.14■■□□□ 1.62
COL7A1-207ENST00000467985 TBC1D9BQ66K14 1250 aa25.14■■□□□ 1.62
COL7A1-207ENST00000467985 ARHGAP27Q6ZUM4 889 aa25.14■■□□□ 1.62
COL7A1-207ENST00000467985 RIPK4P57078 832 aa25.13■■□□□ 1.61
COL7A1-207ENST00000467985 LMOD3Q0VAK6 560 aa25.13■■□□□ 1.61
COL7A1-207ENST00000467985 WDR43Q15061 677 aaKnown RBP eCLIP25.13■■□□□ 1.61
COL7A1-207ENST00000467985 SETDB2Q96T68 719 aa25.13■■□□□ 1.61
COL7A1-207ENST00000467985 LAMB4A4D0S4 1761 aa25.13■■□□□ 1.61
COL7A1-207ENST00000467985 BCORQ6W2J9 1755 aa25.13■■□□□ 1.61
COL7A1-207ENST00000467985 RGL2O15211 777 aa25.12■■□□□ 1.61
COL7A1-207ENST00000467985 CLEC4GQ6UXB4 293 aa25.12■■□□□ 1.61
COL7A1-207ENST00000467985 THUMPD2Q9BTF0 503 aaKnown RBP25.12■■□□□ 1.61
COL7A1-207ENST00000467985 PDZRN3Q9UPQ7 1066 aa25.12■■□□□ 1.61
COL7A1-207ENST00000467985 ZNF652Q9Y2D9 606 aa25.12■■□□□ 1.61
COL7A1-207ENST00000467985 PRKRIP1Q9H875 184 aaPredicted RBP25.11■■□□□ 1.61
COL7A1-207ENST00000467985 PIP4K2AP48426 406 aaPredicted RBP25.1■■□□□ 1.61
COL7A1-207ENST00000467985 EIF4A1P60842 406 aaKnown RBP25.1■■□□□ 1.61
COL7A1-207ENST00000467985 GPBP1L1Q9HC44 474 aaPredicted RBP25.1■■□□□ 1.61
COL7A1-207ENST00000467985 BABAM1Q9NWV8 329 aa25.1■■□□□ 1.61
COL7A1-207ENST00000467985 DLEC1Q9Y238 1755 aa25.09■■□□□ 1.61
COL7A1-207ENST00000467985 NBPF26B4DH59 902 aa25.09■■□□□ 1.61
COL7A1-207ENST00000467985 H0YIN7 160 aa25.09■■□□□ 1.61
COL7A1-207ENST00000467985 TMPOP42166 694 aaKnown RBP25.09■■□□□ 1.61
COL7A1-207ENST00000467985 C1QTNF8P60827 252 aa25.09■■□□□ 1.61
COL7A1-207ENST00000467985 NBPF10Q6P3W6 841 aaKnown RBP25.09■■□□□ 1.61
COL7A1-207ENST00000467985 NBPF15Q8N660 670 aa25.09■■□□□ 1.61
COL7A1-207ENST00000467985 BRIP1Q9BX63 1249 aa25.09■■□□□ 1.61
COL7A1-207ENST00000467985 PDE6BP35913 854 aa25.08■■□□□ 1.61
COL7A1-207ENST00000467985 C2CD5Q86YS7 1000 aa25.08■■□□□ 1.61
COL7A1-207ENST00000467985 PRR5LQ6MZQ0 368 aa25.07■■□□□ 1.6
COL7A1-207ENST00000467985 RUNDC1Q96C34 613 aa25.07■■□□□ 1.6
COL7A1-207ENST00000467985 NPHP1O15259 732 aa25.06■■□□□ 1.6
COL7A1-207ENST00000467985 TTLL6Q8N841 843 aa25.06■■□□□ 1.6
COL7A1-207ENST00000467985 CNBD1Q8NA66 436 aa25.06■■□□□ 1.6
COL7A1-207ENST00000467985 TSPYL4Q9UJ04 414 aa25.06■■□□□ 1.6
COL7A1-207ENST00000467985 ST5P78524 1137 aa25.05■■□□□ 1.6
COL7A1-207ENST00000467985 CCDC146Q8IYE0 955 aa25.04■■□□□ 1.6
COL7A1-207ENST00000467985 ANKRD31Q8N7Z5 1873 aa25.03■■□□□ 1.6
COL7A1-207ENST00000467985 ZNF526Q8TF50 670 aaPredicted RBP25.03■■□□□ 1.6
COL7A1-207ENST00000467985 ADAMTS8Q9UP79 889 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 161.9 ms