RNA–Protein interactions for RNA: ENST00000467852.1

VPS26A-204, Transcript of VPS26, retromer complex component A, humanhuman

TSL 3

Gene VPS26A, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-204ENST00000467852 GPR101Q96P66 508 aaPredicted RBP16.71■□□□□ 0.27
VPS26A-204ENST00000467852 SMG6Q86US8 1419 aaKnown RBP16.7■□□□□ 0.26
VPS26A-204ENST00000467852 FKBP8Q14318 412 aa16.7■□□□□ 0.26
VPS26A-204ENST00000467852 NKX1-1Q15270 411 aaPredicted RBP16.7■□□□□ 0.26
VPS26A-204ENST00000467852 EAPPQ56P03 285 aaPredicted RBP16.7■□□□□ 0.26
VPS26A-204ENST00000467852 CAPNS2Q96L46 248 aa16.7■□□□□ 0.26
VPS26A-204ENST00000467852 TAF1DQ9H5J8 278 aaPredicted RBP16.7■□□□□ 0.26
VPS26A-204ENST00000467852 EDC4Q6P2E9 1401 aaKnown RBP16.7■□□□□ 0.26
VPS26A-204ENST00000467852 CA12O43570 354 aa16.69■□□□□ 0.26
VPS26A-204ENST00000467852 ATXN8OSP0DMR3 200 aa16.69■□□□□ 0.26
VPS26A-204ENST00000467852 SOX10P56693 466 aa16.69■□□□□ 0.26
VPS26A-204ENST00000467852 SAMD1Q6SPF0 538 aaPredicted RBP16.69■□□□□ 0.26
VPS26A-204ENST00000467852 CNTNAP4Q9C0A0 1308 aa16.69■□□□□ 0.26
VPS26A-204ENST00000467852 POLRMTO00411 1230 aaKnown RBP16.68■□□□□ 0.26
VPS26A-204ENST00000467852 GRM1Q13255 1194 aa16.68■□□□□ 0.26
VPS26A-204ENST00000467852 TMC1Q8TDI8 760 aa16.68■□□□□ 0.26
VPS26A-204ENST00000467852 COG3Q96JB2 828 aa16.68■□□□□ 0.26
VPS26A-204ENST00000467852 RBM42Q9BTD8 480 aaKnown RBP16.68■□□□□ 0.26
VPS26A-204ENST00000467852 ATG3Q9NT62 314 aa16.68■□□□□ 0.26
VPS26A-204ENST00000467852 CNTROBQ8N137 903 aa16.67■□□□□ 0.26
VPS26A-204ENST00000467852 SRP68Q9UHB9 627 aaKnown RBP16.67■□□□□ 0.26
VPS26A-204ENST00000467852 THSD7BQ9C0I4 1608 aa16.67■□□□□ 0.26
VPS26A-204ENST00000467852 DLEC1Q9Y238 1755 aa16.66■□□□□ 0.26
VPS26A-204ENST00000467852 MYH14Q7Z406 1995 aaKnown RBP16.66■□□□□ 0.26
VPS26A-204ENST00000467852 RTL1A6NKG5 1358 aa16.65■□□□□ 0.26
VPS26A-204ENST00000467852 FBLN1P23142 703 aa16.65■□□□□ 0.26
VPS26A-204ENST00000467852 TM4SF1P30408 202 aa16.65■□□□□ 0.26
VPS26A-204ENST00000467852 MAP2K2P36507 400 aa16.65■□□□□ 0.26
VPS26A-204ENST00000467852 L3MBTL3Q96JM7 780 aaPredicted RBP16.65■□□□□ 0.26
VPS26A-204ENST00000467852 TERF2IPQ9NYB0 399 aa16.65■□□□□ 0.26
VPS26A-204ENST00000467852 SPG7Q9UQ90 795 aa16.65■□□□□ 0.26
VPS26A-204ENST00000467852 USP42Q9H9J4 1324 aaKnown RBP16.65■□□□□ 0.26
VPS26A-204ENST00000467852 H0YIN7 160 aa16.64■□□□□ 0.25
VPS26A-204ENST00000467852 CYP4F22Q6NT55 531 aa16.64■□□□□ 0.25
VPS26A-204ENST00000467852 C2CD5Q86YS7 1000 aa16.64■□□□□ 0.25
VPS26A-204ENST00000467852 ZNF831Q5JPB2 1677 aa16.64■□□□□ 0.25
VPS26A-204ENST00000467852 FER1L6Q2WGJ9 1857 aa16.64■□□□□ 0.25
VPS26A-204ENST00000467852 COL5A3P25940 1745 aaPredicted RBP16.64■□□□□ 0.25
VPS26A-204ENST00000467852 KDRP35968 1356 aa16.64■□□□□ 0.25
VPS26A-204ENST00000467852 MAP1SQ66K74 1059 aaPredicted RBP16.63■□□□□ 0.25
VPS26A-204ENST00000467852 PNMA8AQ86V59 439 aaPredicted RBP16.63■□□□□ 0.25
VPS26A-204ENST00000467852 SLC4A9Q96Q91 983 aa16.63■□□□□ 0.25
VPS26A-204ENST00000467852 LTBP1Q14766 1721 aa16.62■□□□□ 0.25
VPS26A-204ENST00000467852 AFDNP55196 1824 aaKnown RBP16.62■□□□□ 0.25
VPS26A-204ENST00000467852 NBPF15Q8N660 670 aa16.62■□□□□ 0.25
VPS26A-204ENST00000467852 HACL1Q9UJ83 578 aa16.62■□□□□ 0.25
VPS26A-204ENST00000467852 TAOK3Q9H2K8 898 aa16.61■□□□□ 0.25
VPS26A-204ENST00000467852 SLC12A5Q9H2X9 1139 aa16.61■□□□□ 0.25
VPS26A-204ENST00000467852 DDX21Q9NR30 783 aaKnown RBP eCLIP16.61■□□□□ 0.25
VPS26A-204ENST00000467852 C21orf2O43822 256 aa16.6■□□□□ 0.25
VPS26A-204ENST00000467852 ZPR1O75312 459 aa16.6■□□□□ 0.25
VPS26A-204ENST00000467852 RRS1Q15050 365 aaKnown RBP16.6■□□□□ 0.25
VPS26A-204ENST00000467852 HABP4Q5JVS0 413 aaKnown RBP16.6■□□□□ 0.25
VPS26A-204ENST00000467852 LTBP3Q9NS15 1303 aa16.6■□□□□ 0.25
VPS26A-204ENST00000467852 EPHX2P34913 555 aa16.59■□□□□ 0.25
VPS26A-204ENST00000467852 AOC2O75106 756 aa16.58■□□□□ 0.24
VPS26A-204ENST00000467852 POTEHQ6S545 545 aa16.58■□□□□ 0.24
VPS26A-204ENST00000467852 ZNF622Q969S3 477 aaKnown RBP eCLIP16.58■□□□□ 0.24
VPS26A-204ENST00000467852 ADAMTSL1Q8N6G6 1762 aa16.58■□□□□ 0.24
VPS26A-204ENST00000467852 A0A1W2PP64 1363 aa16.57■□□□□ 0.24
VPS26A-204ENST00000467852 CRKLP46109 303 aaKnown RBP16.57■□□□□ 0.24
VPS26A-204ENST00000467852 IFNL2Q8IZJ0 200 aa16.57■□□□□ 0.24
VPS26A-204ENST00000467852 TRPM7Q96QT4 1865 aa16.56■□□□□ 0.24
VPS26A-204ENST00000467852 RAB3GAP2Q9H2M9 1393 aa16.56■□□□□ 0.24
VPS26A-204ENST00000467852 INSRP06213 1382 aa16.55■□□□□ 0.24
VPS26A-204ENST00000467852 DLL1O00548 723 aa16.55■□□□□ 0.24
VPS26A-204ENST00000467852 SERPINB2P05120 415 aa16.55■□□□□ 0.24
VPS26A-204ENST00000467852 BRPF1P55201 1214 aaPredicted RBP16.55■□□□□ 0.24
VPS26A-204ENST00000467852 HSP90AB2PQ58FF8 381 aa16.55■□□□□ 0.24
VPS26A-204ENST00000467852 USPL1Q5W0Q7 1092 aa16.55■□□□□ 0.24
VPS26A-204ENST00000467852 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.55■□□□□ 0.24
VPS26A-204ENST00000467852 PDZRN3Q9UPQ7 1066 aa16.55■□□□□ 0.24
VPS26A-204ENST00000467852 NRXN2Q9P2S2 1712 aa16.55■□□□□ 0.24
VPS26A-204ENST00000467852 PHKG2P15735 406 aa16.54■□□□□ 0.24
VPS26A-204ENST00000467852 NFIXQ14938 502 aa16.54■□□□□ 0.24
VPS26A-204ENST00000467852 TLL2Q9Y6L7 1015 aa16.54■□□□□ 0.24
VPS26A-204ENST00000467852 ERVV-2B6SEH9 535 aa16.52■□□□□ 0.24
VPS26A-204ENST00000467852 SOGA3Q5TF21 947 aa16.52■□□□□ 0.24
VPS26A-204ENST00000467852 RNF123Q5XPI4 1314 aa16.5■□□□□ 0.23
VPS26A-204ENST00000467852 PDE6BP35913 854 aa16.5■□□□□ 0.23
VPS26A-204ENST00000467852 CIAPIN1Q6FI81 312 aa16.5■□□□□ 0.23
VPS26A-204ENST00000467852 FLT4P35916 1363 aa16.5■□□□□ 0.23
VPS26A-204ENST00000467852 PTCD1O75127 700 aaKnown RBP16.49■□□□□ 0.23
VPS26A-204ENST00000467852 FMR1Q06787 632 aaKnown RBP eCLIP16.49■□□□□ 0.23
VPS26A-204ENST00000467852 CST9Q5W186 159 aa16.49■□□□□ 0.23
VPS26A-204ENST00000467852 ZNF541Q9H0D2 1346 aa16.48■□□□□ 0.23
VPS26A-204ENST00000467852 NARFQ9UHQ1 456 aa16.48■□□□□ 0.23
VPS26A-204ENST00000467852 ROCK2O75116 1388 aaKnown RBP16.48■□□□□ 0.23
VPS26A-204ENST00000467852 CNKSR1Q969H4 720 aa16.47■□□□□ 0.23
VPS26A-204ENST00000467852 CARMIL3Q8ND23 1372 aa16.47■□□□□ 0.23
VPS26A-204ENST00000467852 ADAMTS7Q9UKP4 1686 aa16.46■□□□□ 0.23
VPS26A-204ENST00000467852 CACNA1SQ13698 1873 aa16.46■□□□□ 0.23
VPS26A-204ENST00000467852 FXR1P51114 621 aaKnown RBP eCLIP16.46■□□□□ 0.23
VPS26A-204ENST00000467852 CABP4P57796 275 aa16.46■□□□□ 0.23
VPS26A-204ENST00000467852 INTS5Q6P9B9 1019 aaKnown RBP16.46■□□□□ 0.23
VPS26A-204ENST00000467852 BICDL1Q6ZP65 573 aa16.46■□□□□ 0.23
VPS26A-204ENST00000467852 SAPCD2Q86UD0 394 aa16.46■□□□□ 0.23
VPS26A-204ENST00000467852 HHIPL1Q96JK4 782 aa16.46■□□□□ 0.23
VPS26A-204ENST00000467852 KIF24Q5T7B8 1368 aa16.46■□□□□ 0.23
VPS26A-204ENST00000467852 SLX4Q8IY92 1834 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms