RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CHADLQ6NUI6 762 aa16.19■□□□□ 0.18
SQSTM1-206ENST00000466342 KNSTRNQ9Y448 316 aa16.19■□□□□ 0.18
SQSTM1-206ENST00000466342 CNTNAP1P78357 1384 aa16.18■□□□□ 0.18
SQSTM1-206ENST00000466342 PPM1GO15355 546 aaPredicted RBP16.18■□□□□ 0.18
SQSTM1-206ENST00000466342 PER1O15534 1290 aaPredicted RBP16.18■□□□□ 0.18
SQSTM1-206ENST00000466342 TM4SF1P30408 202 aa16.18■□□□□ 0.18
SQSTM1-206ENST00000466342 ABHD8Q96I13 439 aa16.18■□□□□ 0.18
SQSTM1-206ENST00000466342 POLKQ9UBT6 870 aa16.18■□□□□ 0.18
SQSTM1-206ENST00000466342 SRP68Q9UHB9 627 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-206ENST00000466342 USP42Q9H9J4 1324 aaKnown RBP16.18■□□□□ 0.18
SQSTM1-206ENST00000466342 ERVV-2B6SEH9 535 aa16.17■□□□□ 0.18
SQSTM1-206ENST00000466342 POLRMTO00411 1230 aaKnown RBP16.17■□□□□ 0.18
SQSTM1-206ENST00000466342 LBX1P52954 281 aa16.17■□□□□ 0.18
SQSTM1-206ENST00000466342 MLLT1Q03111 559 aaPredicted RBP16.17■□□□□ 0.18
SQSTM1-206ENST00000466342 WBP1LQ9NX94 342 aa16.16■□□□□ 0.18
SQSTM1-206ENST00000466342 AMER1Q5JTC6 1135 aaPredicted RBP16.15■□□□□ 0.18
SQSTM1-206ENST00000466342 TTLL6Q8N841 843 aa16.15■□□□□ 0.18
SQSTM1-206ENST00000466342 EYA1Q99502 592 aa16.15■□□□□ 0.18
SQSTM1-206ENST00000466342 CRKLP46109 303 aaKnown RBP16.14■□□□□ 0.17
SQSTM1-206ENST00000466342 VEGFBP49765 207 aa16.14■□□□□ 0.17
SQSTM1-206ENST00000466342 RGS19P49795 217 aa16.14■□□□□ 0.17
SQSTM1-206ENST00000466342 ADAMTS7Q9UKP4 1686 aa16.14■□□□□ 0.17
SQSTM1-206ENST00000466342 NPC1L1Q9UHC9 1359 aa16.13■□□□□ 0.17
SQSTM1-206ENST00000466342 NFKBIEO00221 500 aa16.13■□□□□ 0.17
SQSTM1-206ENST00000466342 FER1L6Q2WGJ9 1857 aa16.13■□□□□ 0.17
SQSTM1-206ENST00000466342 NRXN2Q9P2S2 1712 aa16.13■□□□□ 0.17
SQSTM1-206ENST00000466342 POTEIP0CG38 1075 aa16.12■□□□□ 0.17
SQSTM1-206ENST00000466342 POTEJP0CG39 1038 aa16.12■□□□□ 0.17
SQSTM1-206ENST00000466342 TNNT2P45379 298 aaPredicted RBP16.12■□□□□ 0.17
SQSTM1-206ENST00000466342 ZPR1O75312 459 aa16.11■□□□□ 0.17
SQSTM1-206ENST00000466342 PASKQ96RG2 1323 aa16.11■□□□□ 0.17
SQSTM1-206ENST00000466342 SCN4AP35499 1836 aa16.1■□□□□ 0.17
SQSTM1-206ENST00000466342 ZNF316A6NFI3 1004 aaPredicted RBP16.1■□□□□ 0.17
SQSTM1-206ENST00000466342 TMEM88BA6NKF7 163 aa16.1■□□□□ 0.17
SQSTM1-206ENST00000466342 PTCD1O75127 700 aaKnown RBP16.1■□□□□ 0.17
SQSTM1-206ENST00000466342 HSP90AB1P08238 724 aaKnown RBP16.1■□□□□ 0.17
SQSTM1-206ENST00000466342 HSPA8P11142 646 aaKnown RBP16.1■□□□□ 0.17
SQSTM1-206ENST00000466342 ERFEQ4G0M1 354 aa16.1■□□□□ 0.17
SQSTM1-206ENST00000466342 MORC1Q86VD1 984 aa16.1■□□□□ 0.17
SQSTM1-206ENST00000466342 TJP1Q07157 1748 aa16.09■□□□□ 0.17
SQSTM1-206ENST00000466342 CCDC85CA6NKD9 419 aa16.09■□□□□ 0.17
SQSTM1-206ENST00000466342 CABP4P57796 275 aa16.09■□□□□ 0.17
SQSTM1-206ENST00000466342 EIF4A2Q14240 407 aaKnown RBP16.09■□□□□ 0.17
SQSTM1-206ENST00000466342 USPL1Q5W0Q7 1092 aa16.09■□□□□ 0.17
SQSTM1-206ENST00000466342 H0YIN7 160 aa16.08■□□□□ 0.16
SQSTM1-206ENST00000466342 DDX10Q13206 875 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-206ENST00000466342 CC2D1BQ5T0F9 858 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-206ENST00000466342 INTS5Q6P9B9 1019 aaKnown RBP16.08■□□□□ 0.16
SQSTM1-206ENST00000466342 C2CD5Q86YS7 1000 aa16.08■□□□□ 0.16
SQSTM1-206ENST00000466342 DDNO94850 711 aaPredicted RBP16.07■□□□□ 0.16
SQSTM1-206ENST00000466342 ITGBL1O95965 494 aaPredicted RBP16.07■□□□□ 0.16
SQSTM1-206ENST00000466342 SERPINB2P05120 415 aa16.07■□□□□ 0.16
SQSTM1-206ENST00000466342 MAP2K1Q02750 393 aaPredicted RBP16.07■□□□□ 0.16
SQSTM1-206ENST00000466342 NFIXQ14938 502 aa16.07■□□□□ 0.16
SQSTM1-206ENST00000466342 LDHDQ86WU2 507 aa16.07■□□□□ 0.16
SQSTM1-206ENST00000466342 DEFB115Q30KQ5 88 aa16.06■□□□□ 0.16
SQSTM1-206ENST00000466342 IQCA1LA6NCM1 817 aa16.05■□□□□ 0.16
SQSTM1-206ENST00000466342 TNRC18O15417 2968 aaPredicted RBP16.05■□□□□ 0.16
SQSTM1-206ENST00000466342 RASSF10A6NK89 507 aa16.04■□□□□ 0.16
SQSTM1-206ENST00000466342 C21orf2O43822 256 aa16.04■□□□□ 0.16
SQSTM1-206ENST00000466342 PLEKHO1Q53GL0 409 aaPredicted RBP16.04■□□□□ 0.16
SQSTM1-206ENST00000466342 NFATC2IPQ8NCF5 419 aa16.04■□□□□ 0.16
SQSTM1-206ENST00000466342 NARFQ9UHQ1 456 aa16.04■□□□□ 0.16
SQSTM1-206ENST00000466342 ANKRD31Q8N7Z5 1873 aa16.03■□□□□ 0.16
SQSTM1-206ENST00000466342 TAF1DQ9H5J8 278 aaPredicted RBP16.03■□□□□ 0.16
SQSTM1-206ENST00000466342 CACNA1SQ13698 1873 aa16.03■□□□□ 0.16
SQSTM1-206ENST00000466342 SOS1Q07889 1333 aaPredicted RBP16.02■□□□□ 0.16
SQSTM1-206ENST00000466342 WDR33Q9C0J8 1336 aaKnown RBP16.02■□□□□ 0.16
SQSTM1-206ENST00000466342 LTBP3Q9NS15 1303 aa16.02■□□□□ 0.16
SQSTM1-206ENST00000466342 MTHFSP49914 203 aa16.02■□□□□ 0.16
SQSTM1-206ENST00000466342 CNGB1Q14028 1251 aaPredicted RBP16.02■□□□□ 0.16
SQSTM1-206ENST00000466342 ZNF530Q6P9A1 599 aaPredicted RBP16.01■□□□□ 0.15
SQSTM1-206ENST00000466342 ZNF622Q969S3 477 aaKnown RBP eCLIP16.01■□□□□ 0.15
SQSTM1-206ENST00000466342 L3MBTL3Q96JM7 780 aaPredicted RBP16.01■□□□□ 0.15
SQSTM1-206ENST00000466342 ZNF219Q9P2Y4 722 aaPredicted RBP16.01■□□□□ 0.15
SQSTM1-206ENST00000466342 PDZRN3Q9UPQ7 1066 aa16.01■□□□□ 0.15
SQSTM1-206ENST00000466342 SCN11AQ9UI33 1791 aa16■□□□□ 0.15
SQSTM1-206ENST00000466342 AMOTQ4VCS5 1084 aa16■□□□□ 0.15
SQSTM1-206ENST00000466342 TAOK3Q9H2K8 898 aa16■□□□□ 0.15
SQSTM1-206ENST00000466342 BCL2L12Q9HB09 334 aa16■□□□□ 0.15
SQSTM1-206ENST00000466342 SLX4Q8IY92 1834 aa16■□□□□ 0.15
SQSTM1-206ENST00000466342 CARMIL3Q8ND23 1372 aa16■□□□□ 0.15
SQSTM1-206ENST00000466342 DNAJC10Q8IXB1 793 aa15.99■□□□□ 0.15
SQSTM1-206ENST00000466342 CLEC11AQ9Y240 323 aa15.99■□□□□ 0.15
SQSTM1-206ENST00000466342 ADAMTSL1Q8N6G6 1762 aa15.99■□□□□ 0.15
SQSTM1-206ENST00000466342 CYP19A1P11511 503 aaPredicted RBP15.98■□□□□ 0.15
SQSTM1-206ENST00000466342 PDE6BP35913 854 aa15.98■□□□□ 0.15
SQSTM1-206ENST00000466342 EAPPQ56P03 285 aaPredicted RBP15.98■□□□□ 0.15
SQSTM1-206ENST00000466342 COL15A1P39059 1388 aa15.98■□□□□ 0.15
SQSTM1-206ENST00000466342 COL11A2P13942 1736 aaPredicted RBP15.97■□□□□ 0.15
SQSTM1-206ENST00000466342 IL13P35225 146 aa15.97■□□□□ 0.15
SQSTM1-206ENST00000466342 C1orf141Q5JVX7 400 aa15.97■□□□□ 0.15
SQSTM1-206ENST00000466342 CNTROBQ8N137 903 aa15.97■□□□□ 0.15
SQSTM1-206ENST00000466342 BEGAINQ9BUH8 593 aa15.97■□□□□ 0.15
SQSTM1-206ENST00000466342 BRIP1Q9BX63 1249 aa15.97■□□□□ 0.15
SQSTM1-206ENST00000466342 CASP8AP2Q9UKL3 1982 aa15.96■□□□□ 0.15
SQSTM1-206ENST00000466342 ARFGEF2Q9Y6D5 1785 aa15.96■□□□□ 0.15
SQSTM1-206ENST00000466342 SULT6B1Q6IMI4 303 aa15.96■□□□□ 0.15
SQSTM1-206ENST00000466342 CFAP44Q96MT7 982 aa15.96■□□□□ 0.15
SQSTM1-206ENST00000466342 HACL1Q9UJ83 578 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms