RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 CRKLP46109 303 aaKnown RBP15.35■□□□□ 0.05
USP54-209ENST00000464635 ARHGEF1Q92888 912 aaKnown RBP15.35■□□□□ 0.05
USP54-209ENST00000464635 WWC3Q9ULE0 1092 aa15.35■□□□□ 0.05
USP54-209ENST00000464635 IL16Q14005 1332 aa15.35■□□□□ 0.05
USP54-209ENST00000464635 BRCA1P38398 1863 aaKnown RBP15.34■□□□□ 0.05
USP54-209ENST00000464635 MMP10P09238 476 aa15.34■□□□□ 0.05
USP54-209ENST00000464635 SLC39A6Q13433 755 aa15.34■□□□□ 0.05
USP54-209ENST00000464635 TRAPPC3LQ5T215 181 aa15.34■□□□□ 0.05
USP54-209ENST00000464635 RSPH6AQ9H0K4 717 aa15.34■□□□□ 0.05
USP54-209ENST00000464635 DUSP27Q5VZP5 1158 aa15.33■□□□□ 0.04
USP54-209ENST00000464635 DNAJC10Q8IXB1 793 aa15.33■□□□□ 0.04
USP54-209ENST00000464635 CCDC146Q8IYE0 955 aa15.33■□□□□ 0.04
USP54-209ENST00000464635 SUPT16HQ9Y5B9 1047 aaKnown RBP15.33■□□□□ 0.04
USP54-209ENST00000464635 MAPK8IP3Q9UPT6 1336 aa15.33■□□□□ 0.04
USP54-209ENST00000464635 C10orf71Q711Q0 1435 aa15.33■□□□□ 0.04
USP54-209ENST00000464635 PXDNLA1KZ92 1463 aa15.33■□□□□ 0.04
USP54-209ENST00000464635 GYS1P13807 737 aa15.32■□□□□ 0.04
USP54-209ENST00000464635 ADRA2BP18089 450 aa15.32■□□□□ 0.04
USP54-209ENST00000464635 TMPOP42166 694 aaKnown RBP15.32■□□□□ 0.04
USP54-209ENST00000464635 SRP68Q9UHB9 627 aaKnown RBP15.32■□□□□ 0.04
USP54-209ENST00000464635 CT47B1P0C2W7 299 aaPredicted RBP15.31■□□□□ 0.04
USP54-209ENST00000464635 RFC4P35249 363 aa15.31■□□□□ 0.04
USP54-209ENST00000464635 INTS5Q6P9B9 1019 aaKnown RBP15.31■□□□□ 0.04
USP54-209ENST00000464635 AFDNP55196 1824 aaKnown RBP15.3■□□□□ 0.04
USP54-209ENST00000464635 CALD1Q05682 793 aaKnown RBP15.3■□□□□ 0.04
USP54-209ENST00000464635 USP42Q9H9J4 1324 aaKnown RBP15.29■□□□□ 0.04
USP54-209ENST00000464635 GRIN3BO60391 1043 aa15.29■□□□□ 0.04
USP54-209ENST00000464635 LMOD3Q0VAK6 560 aa15.29■□□□□ 0.04
USP54-209ENST00000464635 RCAN3Q9UKA8 241 aa15.29■□□□□ 0.04
USP54-209ENST00000464635 SOS1Q07889 1333 aaPredicted RBP15.28■□□□□ 0.04
USP54-209ENST00000464635 DLG5Q8TDM6 1919 aa15.28■□□□□ 0.04
USP54-209ENST00000464635 CYP19A1P11511 503 aaPredicted RBP15.28■□□□□ 0.04
USP54-209ENST00000464635 PRKAR2BP31323 418 aa15.28■□□□□ 0.04
USP54-209ENST00000464635 NLGN1Q8N2Q7 840 aa15.28■□□□□ 0.04
USP54-209ENST00000464635 IL17REQ8NFR9 667 aa15.28■□□□□ 0.04
USP54-209ENST00000464635 CDCA7LQ96GN5 454 aa15.28■□□□□ 0.04
USP54-209ENST00000464635 PHACTR3Q96KR7 559 aa15.28■□□□□ 0.04
USP54-209ENST00000464635 CCDC87Q9NVE4 849 aa15.28■□□□□ 0.04
USP54-209ENST00000464635 FKBP8Q14318 412 aa15.27■□□□□ 0.04
USP54-209ENST00000464635 NFE2L2Q16236 605 aa15.27■□□□□ 0.04
USP54-209ENST00000464635 GAS2L2Q8NHY3 880 aa15.27■□□□□ 0.04
USP54-209ENST00000464635 MYH16Q9H6N6 1097 aa15.27■□□□□ 0.04
USP54-209ENST00000464635 ZBTB1Q9Y2K1 713 aa15.27■□□□□ 0.04
USP54-209ENST00000464635 SCN7AQ01118 1682 aa15.27■□□□□ 0.03
USP54-209ENST00000464635 ARFGEF1Q9Y6D6 1849 aa15.27■□□□□ 0.03
USP54-209ENST00000464635 GNAT3A8MTJ3 354 aa15.26■□□□□ 0.03
USP54-209ENST00000464635 DDR1Q08345 913 aa15.26■□□□□ 0.03
USP54-209ENST00000464635 SALL2Q9Y467 1007 aaPredicted RBP15.26■□□□□ 0.03
USP54-209ENST00000464635 NRXN2Q9P2S2 1712 aa15.26■□□□□ 0.03
USP54-209ENST00000464635 ATP10DQ9P241 1426 aa15.26■□□□□ 0.03
USP54-209ENST00000464635 COL15A1P39059 1388 aa15.25■□□□□ 0.03
USP54-209ENST00000464635 CEMIPQ8WUJ3 1361 aa15.25■□□□□ 0.03
USP54-209ENST00000464635 TRIM35Q9UPQ4 493 aa15.25■□□□□ 0.03
USP54-209ENST00000464635 PARP3Q9Y6F1 533 aa15.25■□□□□ 0.03
USP54-209ENST00000464635 ADCY9O60503 1353 aa15.24■□□□□ 0.03
USP54-209ENST00000464635 A0A0G2JLW4 131 aa15.24■□□□□ 0.03
USP54-209ENST00000464635 HTATSF1O43719 755 aaKnown RBP15.24■□□□□ 0.03
USP54-209ENST00000464635 RIPK4P57078 832 aa15.24■□□□□ 0.03
USP54-209ENST00000464635 ZNF496Q96IT1 587 aaPredicted RBP15.24■□□□□ 0.03
USP54-209ENST00000464635 DPEP1P16444 411 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 TEFQ10587 303 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 USPL1Q5W0Q7 1092 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 TTC5Q8N0Z6 440 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 VSIG10Q8N0Z9 540 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 ZNF428Q96B54 188 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 BCORQ6W2J9 1755 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 DLEC1Q9Y238 1755 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 HEG1Q9ULI3 1381 aa15.23■□□□□ 0.03
USP54-209ENST00000464635 KCNQ3O43525 872 aa15.22■□□□□ 0.03
USP54-209ENST00000464635 ZNF790Q6PG37 636 aa15.22■□□□□ 0.03
USP54-209ENST00000464635 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.22■□□□□ 0.03
USP54-209ENST00000464635 POLRMTO00411 1230 aaKnown RBP15.21■□□□□ 0.03
USP54-209ENST00000464635 CANXP27824 592 aaKnown RBP15.21■□□□□ 0.03
USP54-209ENST00000464635 TGFB2P61812 414 aa15.21■□□□□ 0.03
USP54-209ENST00000464635 BCL2L12Q9HB09 334 aa15.21■□□□□ 0.03
USP54-209ENST00000464635 ANKRD31Q8N7Z5 1873 aa15.2■□□□□ 0.02
USP54-209ENST00000464635 ZPR1O75312 459 aa15.2■□□□□ 0.02
USP54-209ENST00000464635 KCNA3P22001 575 aa15.2■□□□□ 0.02
USP54-209ENST00000464635 TM4SF1P30408 202 aa15.2■□□□□ 0.02
USP54-209ENST00000464635 RRP1P56182 461 aaKnown RBP15.2■□□□□ 0.02
USP54-209ENST00000464635 SPINK5Q9NQ38 1064 aaPredicted RBP15.2■□□□□ 0.02
USP54-209ENST00000464635 BCS1LQ9Y276 419 aa15.2■□□□□ 0.02
USP54-209ENST00000464635 LAMB4A4D0S4 1761 aa15.19■□□□□ 0.02
USP54-209ENST00000464635 KDM3BQ7LBC6 1761 aa15.19■□□□□ 0.02
USP54-209ENST00000464635 DCTN1Q14203 1278 aa15.19■□□□□ 0.02
USP54-209ENST00000464635 NFIXQ14938 502 aa15.19■□□□□ 0.02
USP54-209ENST00000464635 MCM10Q7L590 875 aa15.19■□□□□ 0.02
USP54-209ENST00000464635 NARFQ9UHQ1 456 aa15.19■□□□□ 0.02
USP54-209ENST00000464635 COL11A2P13942 1736 aaPredicted RBP15.18■□□□□ 0.02
USP54-209ENST00000464635 GIGYF1O75420 1035 aaPredicted RBP15.18■□□□□ 0.02
USP54-209ENST00000464635 ZNF853P0CG23 659 aa15.18■□□□□ 0.02
USP54-209ENST00000464635 EIF5P55010 431 aaKnown RBP15.18■□□□□ 0.02
USP54-209ENST00000464635 C1QTNF8P60827 252 aa15.18■□□□□ 0.02
USP54-209ENST00000464635 GNAI1P63096 354 aa15.18■□□□□ 0.02
USP54-209ENST00000464635 NEUROD2Q15784 382 aa15.18■□□□□ 0.02
USP54-209ENST00000464635 IFT57Q9NWB7 429 aa15.18■□□□□ 0.02
USP54-209ENST00000464635 PPP4R2Q9NY27 417 aa15.18■□□□□ 0.02
USP54-209ENST00000464635 RRP7AQ9Y3A4 280 aaKnown RBP15.18■□□□□ 0.02
USP54-209ENST00000464635 CARMIL3Q8ND23 1372 aa15.17■□□□□ 0.02
USP54-209ENST00000464635 PRAMEF22A3QJZ6 481 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms