RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 RALBP1Q15311 655 aa9.69□□□□□ -0.86
PTPRF-210ENST00000463041 ZNF496Q96IT1 587 aaPredicted RBP9.69□□□□□ -0.86
PTPRF-210ENST00000463041 SIPA1L3O60292 1781 aaPredicted RBP9.68□□□□□ -0.86
PTPRF-210ENST00000463041 KCPQ6ZWJ8 1503 aa9.68□□□□□ -0.86
PTPRF-210ENST00000463041 HEG1Q9ULI3 1381 aa9.68□□□□□ -0.86
PTPRF-210ENST00000463041 CANXP27824 592 aaKnown RBP9.68□□□□□ -0.86
PTPRF-210ENST00000463041 USPL1Q5W0Q7 1092 aa9.68□□□□□ -0.86
PTPRF-210ENST00000463041 ZBTB1Q9Y2K1 713 aa9.68□□□□□ -0.86
PTPRF-210ENST00000463041 UBR2Q8IWV8 1755 aa9.68□□□□□ -0.86
PTPRF-210ENST00000463041 C4AP0C0L4 1744 aa9.68□□□□□ -0.86
PTPRF-210ENST00000463041 DPEP1P16444 411 aa9.67□□□□□ -0.86
PTPRF-210ENST00000463041 IL6STP40189 918 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-210ENST00000463041 DDX10Q13206 875 aaKnown RBP9.67□□□□□ -0.86
PTPRF-210ENST00000463041 TAF7Q15545 349 aaPredicted RBP9.67□□□□□ -0.86
PTPRF-210ENST00000463041 NPM2Q86SE8 214 aaKnown RBP9.67□□□□□ -0.86
PTPRF-210ENST00000463041 N4BP2Q86UW6 1770 aaPredicted RBP9.66□□□□□ -0.86
PTPRF-210ENST00000463041 POLRMTO00411 1230 aaKnown RBP9.66□□□□□ -0.86
PTPRF-210ENST00000463041 KCNQ3O43525 872 aa9.66□□□□□ -0.86
PTPRF-210ENST00000463041 SNRPA1P09661 255 aaKnown RBP9.66□□□□□ -0.86
PTPRF-210ENST00000463041 KCNA3P22001 575 aa9.66□□□□□ -0.86
PTPRF-210ENST00000463041 DDR1Q08345 913 aa9.66□□□□□ -0.86
PTPRF-210ENST00000463041 MCM10Q7L590 875 aa9.66□□□□□ -0.86
PTPRF-210ENST00000463041 PLEKHF1Q96S99 279 aa9.66□□□□□ -0.86
PTPRF-210ENST00000463041 PIM2Q9P1W9 311 aa9.66□□□□□ -0.86
PTPRF-210ENST00000463041 BCS1LQ9Y276 419 aa9.66□□□□□ -0.86
PTPRF-210ENST00000463041 C10orf71Q711Q0 1435 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 COL15A1P39059 1388 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 A1BGP04217 495 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 SERPINB2P05120 415 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 DCTN1Q14203 1278 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 NFIXQ14938 502 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 PNISRQ8TF01 805 aaKnown RBP9.65□□□□□ -0.86
PTPRF-210ENST00000463041 BCL2L12Q9HB09 334 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 WWC3Q9ULE0 1092 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 USP16Q9Y5T5 823 aa9.65□□□□□ -0.86
PTPRF-210ENST00000463041 PXDNLA1KZ92 1463 aa9.65□□□□□ -0.87
PTPRF-210ENST00000463041 NFE2L2Q16236 605 aa9.64□□□□□ -0.87
PTPRF-210ENST00000463041 DALRD3Q5D0E6 543 aaKnown RBP9.64□□□□□ -0.87
PTPRF-210ENST00000463041 ARHGAP27Q6ZUM4 889 aa9.64□□□□□ -0.87
PTPRF-210ENST00000463041 DLG5Q8TDM6 1919 aa9.64□□□□□ -0.87
PTPRF-210ENST00000463041 AFDNP55196 1824 aaKnown RBP9.63□□□□□ -0.87
PTPRF-210ENST00000463041 KIAA1551Q9HCM1 1747 aa9.63□□□□□ -0.87
PTPRF-210ENST00000463041 C1QTNF8P60827 252 aa9.63□□□□□ -0.87
PTPRF-210ENST00000463041 PDZRN3Q9UPQ7 1066 aa9.63□□□□□ -0.87
PTPRF-210ENST00000463041 TBC1D2BQ9UPU7 963 aa9.63□□□□□ -0.87
PTPRF-210ENST00000463041 BRCA1P38398 1863 aaKnown RBP9.63□□□□□ -0.87
PTPRF-210ENST00000463041 MAPK8IP3Q9UPT6 1336 aa9.62□□□□□ -0.87
PTPRF-210ENST00000463041 ARFGEF1Q9Y6D6 1849 aa9.62□□□□□ -0.87
PTPRF-210ENST00000463041 GIGYF1O75420 1035 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-210ENST00000463041 CLEC4GQ6UXB4 293 aa9.62□□□□□ -0.87
PTPRF-210ENST00000463041 SETDB2Q96T68 719 aa9.62□□□□□ -0.87
PTPRF-210ENST00000463041 GPBP1L1Q9HC44 474 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-210ENST00000463041 MIS18AQ9NYP9 233 aa9.62□□□□□ -0.87
PTPRF-210ENST00000463041 ZNF330Q9Y3S2 320 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-210ENST00000463041 MYBBP1AQ9BQG0 1328 aaKnown RBP9.61□□□□□ -0.87
PTPRF-210ENST00000463041 H0YIN7 160 aa9.61□□□□□ -0.87
PTPRF-210ENST00000463041 RGL2O15211 777 aa9.61□□□□□ -0.87
PTPRF-210ENST00000463041 CAMTA2O94983 1202 aa9.61□□□□□ -0.87
PTPRF-210ENST00000463041 CHRNA5P30532 468 aa9.61□□□□□ -0.87
PTPRF-210ENST00000463041 TBC1D9BQ66K14 1250 aa9.61□□□□□ -0.87
PTPRF-210ENST00000463041 BICDL1Q6ZP65 573 aa9.61□□□□□ -0.87
PTPRF-210ENST00000463041 DZIP3Q86Y13 1208 aaKnown RBP9.61□□□□□ -0.87
PTPRF-210ENST00000463041 BRIP1Q9BX63 1249 aa9.61□□□□□ -0.87
PTPRF-210ENST00000463041 NRXN2Q9P2S2 1712 aa9.6□□□□□ -0.87
PTPRF-210ENST00000463041 ATP10DQ9P241 1426 aa9.6□□□□□ -0.87
PTPRF-210ENST00000463041 PRAMEF22A3QJZ6 481 aa9.6□□□□□ -0.87
PTPRF-210ENST00000463041 PDE6BP35913 854 aa9.6□□□□□ -0.87
PTPRF-210ENST00000463041 RIPK4P57078 832 aa9.6□□□□□ -0.87
PTPRF-210ENST00000463041 TTLL6Q8N841 843 aa9.6□□□□□ -0.87
PTPRF-210ENST00000463041 BABAM1Q9NWV8 329 aa9.6□□□□□ -0.87
PTPRF-210ENST00000463041 ADCY9O60503 1353 aa9.6□□□□□ -0.87
PTPRF-210ENST00000463041 NBPF26B4DH59 902 aa9.59□□□□□ -0.87
PTPRF-210ENST00000463041 ZEB1P37275 1124 aaPredicted RBP9.59□□□□□ -0.87
PTPRF-210ENST00000463041 TMPOP42166 694 aaKnown RBP9.59□□□□□ -0.87
PTPRF-210ENST00000463041 EIF4A1P60842 406 aaKnown RBP9.59□□□□□ -0.87
PTPRF-210ENST00000463041 LMOD3Q0VAK6 560 aa9.59□□□□□ -0.87
PTPRF-210ENST00000463041 NBPF10Q6P3W6 841 aaKnown RBP9.59□□□□□ -0.87
PTPRF-210ENST00000463041 C2CD5Q86YS7 1000 aa9.59□□□□□ -0.87
PTPRF-210ENST00000463041 NBPF15Q8N660 670 aa9.59□□□□□ -0.87
PTPRF-210ENST00000463041 ZNF652Q9Y2D9 606 aa9.59□□□□□ -0.87
PTPRF-210ENST00000463041 SBF1O95248 1867 aa9.59□□□□□ -0.87
PTPRF-210ENST00000463041 PIP4K2AP48426 406 aaPredicted RBP9.58□□□□□ -0.88
PTPRF-210ENST00000463041 PRR5LQ6MZQ0 368 aa9.58□□□□□ -0.88
PTPRF-210ENST00000463041 TPTE2Q6XPS3 522 aa9.58□□□□□ -0.88
PTPRF-210ENST00000463041 CARMIL3Q8ND23 1372 aa9.58□□□□□ -0.88
PTPRF-210ENST00000463041 ERVV-1B6SEH8 477 aa9.57□□□□□ -0.88
PTPRF-210ENST00000463041 NPHP1O15259 732 aa9.57□□□□□ -0.88
PTPRF-210ENST00000463041 ST5P78524 1137 aa9.57□□□□□ -0.88
PTPRF-210ENST00000463041 WDR43Q15061 677 aaKnown RBP eCLIP9.57□□□□□ -0.88
PTPRF-210ENST00000463041 C9orf131Q5VYM1 1079 aa9.57□□□□□ -0.88
PTPRF-210ENST00000463041 CNBD1Q8NA66 436 aa9.57□□□□□ -0.88
PTPRF-210ENST00000463041 ZNF526Q8TF50 670 aaPredicted RBP9.57□□□□□ -0.88
PTPRF-210ENST00000463041 ZNF622Q969S3 477 aaKnown RBP eCLIP9.57□□□□□ -0.88
PTPRF-210ENST00000463041 RUNDC1Q96C34 613 aa9.57□□□□□ -0.88
PTPRF-210ENST00000463041 THUMPD2Q9BTF0 503 aaKnown RBP9.57□□□□□ -0.88
PTPRF-210ENST00000463041 PRKRIP1Q9H875 184 aaPredicted RBP9.57□□□□□ -0.88
PTPRF-210ENST00000463041 CCDC88AQ3V6T2 1871 aa9.56□□□□□ -0.88
PTPRF-210ENST00000463041 NBPF5PQ86XG9 351 aaPredicted RBP9.56□□□□□ -0.88
PTPRF-210ENST00000463041 CNKSR1Q969H4 720 aa9.56□□□□□ -0.88
PTPRF-210ENST00000463041 TSPYL4Q9UJ04 414 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms