RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 UBR2Q8IWV8 1755 aa18.14■□□□□ 0.49
HDAC6-213ENST00000462730 ERVV-2B6SEH9 535 aa18.13■□□□□ 0.49
HDAC6-213ENST00000462730 PHAXQ9H814 394 aaKnown RBP18.13■□□□□ 0.49
HDAC6-213ENST00000462730 SPATA31A1Q5TZJ5 1347 aa18.13■□□□□ 0.49
HDAC6-213ENST00000462730 PXDNLA1KZ92 1463 aa18.13■□□□□ 0.49
HDAC6-213ENST00000462730 CHD1LQ86WJ1 897 aa18.13■□□□□ 0.49
HDAC6-213ENST00000462730 ANKRD44Q8N8A2 993 aa18.13■□□□□ 0.49
HDAC6-213ENST00000462730 ZNF496Q96IT1 587 aaPredicted RBP18.13■□□□□ 0.49
HDAC6-213ENST00000462730 CEP85Q6P2H3 762 aa18.12■□□□□ 0.49
HDAC6-213ENST00000462730 LNPKQ9C0E8 428 aa18.12■□□□□ 0.49
HDAC6-213ENST00000462730 LRP6O75581 1613 aa18.12■□□□□ 0.49
HDAC6-213ENST00000462730 LAMB4A4D0S4 1761 aa18.12■□□□□ 0.49
HDAC6-213ENST00000462730 ANXA1P04083 346 aa18.11■□□□□ 0.49
HDAC6-213ENST00000462730 ANKRD45Q5TZF3 282 aa18.11■□□□□ 0.49
HDAC6-213ENST00000462730 RPAP2Q8IXW5 612 aaPredicted RBP18.11■□□□□ 0.49
HDAC6-213ENST00000462730 C8orf37Q96NL8 207 aa18.1■□□□□ 0.49
HDAC6-213ENST00000462730 FMNL2Q96PY5 1086 aa18.1■□□□□ 0.49
HDAC6-213ENST00000462730 DBF4Q9UBU7 674 aaPredicted RBP18.1■□□□□ 0.49
HDAC6-213ENST00000462730 THRAP3Q9Y2W1 955 aaKnown RBP18.1■□□□□ 0.49
HDAC6-213ENST00000462730 SPATA31A5Q5VU36 1347 aa18.1■□□□□ 0.49
HDAC6-213ENST00000462730 SPATA31A6Q5VVP1 1343 aa18.1■□□□□ 0.49
HDAC6-213ENST00000462730 SPATA31A7Q8IWB4 1347 aa18.1■□□□□ 0.49
HDAC6-213ENST00000462730 KCPQ6ZWJ8 1503 aa18.09■□□□□ 0.49
HDAC6-213ENST00000462730 RTL5Q5HYW3 569 aaPredicted RBP18.09■□□□□ 0.49
HDAC6-213ENST00000462730 ITGB4P16144 1822 aa18.09■□□□□ 0.49
HDAC6-213ENST00000462730 EXOC5O00471 708 aa18.08■□□□□ 0.49
HDAC6-213ENST00000462730 PROSER3Q2NL68 480 aa18.08■□□□□ 0.49
HDAC6-213ENST00000462730 CDCA7Q9BWT1 371 aaPredicted RBP18.08■□□□□ 0.49
HDAC6-213ENST00000462730 CCDC9Q9Y3X0 531 aaKnown RBP18.08■□□□□ 0.49
HDAC6-213ENST00000462730 BCL9LQ86UU0 1499 aa18.08■□□□□ 0.48
HDAC6-213ENST00000462730 GNAI2P04899 355 aa18.08■□□□□ 0.48
HDAC6-213ENST00000462730 SNRPA1P09661 255 aaKnown RBP18.08■□□□□ 0.48
HDAC6-213ENST00000462730 UNC5CLQ8IV45 518 aa18.08■□□□□ 0.48
HDAC6-213ENST00000462730 DCTPP1Q9H773 170 aa18.08■□□□□ 0.48
HDAC6-213ENST00000462730 DOT1LQ8TEK3 1739 aa18.07■□□□□ 0.48
HDAC6-213ENST00000462730 GNAI3P08754 354 aa18.07■□□□□ 0.48
HDAC6-213ENST00000462730 TMOD3Q9NYL9 352 aa18.07■□□□□ 0.48
HDAC6-213ENST00000462730 HSPA1LP34931 641 aa18.06■□□□□ 0.48
HDAC6-213ENST00000462730 NGLY1Q96IV0 654 aa18.06■□□□□ 0.48
HDAC6-213ENST00000462730 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.05■□□□□ 0.48
HDAC6-213ENST00000462730 HMMRO75330 724 aa18.05■□□□□ 0.48
HDAC6-213ENST00000462730 DNAAF4Q8WXU2 420 aa18.05■□□□□ 0.48
HDAC6-213ENST00000462730 DDX21Q9NR30 783 aaKnown RBP eCLIP18.05■□□□□ 0.48
HDAC6-213ENST00000462730 ADCY9O60503 1353 aa18.05■□□□□ 0.48
HDAC6-213ENST00000462730 PDIA6Q15084 440 aa18.04■□□□□ 0.48
HDAC6-213ENST00000462730 DDB1Q16531 1140 aa18.04■□□□□ 0.48
HDAC6-213ENST00000462730 SRCIN1Q9C0H9 1055 aa18.04■□□□□ 0.48
HDAC6-213ENST00000462730 HYPKQ9NX55 129 aa18.04■□□□□ 0.48
HDAC6-213ENST00000462730 USP16Q9Y5T5 823 aa18.04■□□□□ 0.48
HDAC6-213ENST00000462730 PI4KAP2A4QPH2 592 aa18.04■□□□□ 0.48
HDAC6-213ENST00000462730 BARGINQ6ZT62 677 aa18.04■□□□□ 0.48
HDAC6-213ENST00000462730 PI4KAP1Q8N8J0 262 aa18.04■□□□□ 0.48
HDAC6-213ENST00000462730 SEC24BO95487 1268 aa18.03■□□□□ 0.48
HDAC6-213ENST00000462730 FNBP4Q8N3X1 1017 aaPredicted RBP18.02■□□□□ 0.48
HDAC6-213ENST00000462730 PIGBQ92521 554 aa18.02■□□□□ 0.48
HDAC6-213ENST00000462730 USP44Q9H0E7 712 aa18.02■□□□□ 0.48
HDAC6-213ENST00000462730 UBTFL1P0CB47 393 aaPredicted RBP18.02■□□□□ 0.47
HDAC6-213ENST00000462730 VPS72Q15906 364 aa18.02■□□□□ 0.47
HDAC6-213ENST00000462730 BEND3Q5T5X7 828 aa18.02■□□□□ 0.47
HDAC6-213ENST00000462730 LRRFIP2Q9Y608 721 aaKnown RBP18.02■□□□□ 0.47
HDAC6-213ENST00000462730 BCL9O00512 1426 aa18.02■□□□□ 0.47
HDAC6-213ENST00000462730 PTCD1O75127 700 aaKnown RBP18.01■□□□□ 0.47
HDAC6-213ENST00000462730 MYL6BP14649 208 aa18.01■□□□□ 0.47
HDAC6-213ENST00000462730 DDRGK1Q96HY6 314 aa18■□□□□ 0.47
HDAC6-213ENST00000462730 PIP4K2AP48426 406 aaPredicted RBP18■□□□□ 0.47
HDAC6-213ENST00000462730 MAP3K2Q9Y2U5 619 aa18■□□□□ 0.47
HDAC6-213ENST00000462730 ATP8B2P98198 1209 aa17.99■□□□□ 0.47
HDAC6-213ENST00000462730 AIMP1Q12904 312 aaKnown RBP17.99■□□□□ 0.47
HDAC6-213ENST00000462730 FAM98CQ17RN3 349 aaKnown RBP17.99■□□□□ 0.47
HDAC6-213ENST00000462730 KSR2Q6VAB6 950 aa17.99■□□□□ 0.47
HDAC6-213ENST00000462730 USP21Q9UK80 565 aa17.99■□□□□ 0.47
HDAC6-213ENST00000462730 ASAP1Q9ULH1 1129 aa17.99■□□□□ 0.47
HDAC6-213ENST00000462730 APBB1O00213 710 aa17.99■□□□□ 0.47
HDAC6-213ENST00000462730 MEX3CQ5U5Q3 659 aaKnown RBP17.99■□□□□ 0.47
HDAC6-213ENST00000462730 LRP10Q7Z4F1 713 aa17.99■□□□□ 0.47
HDAC6-213ENST00000462730 SYTL4Q96C24 671 aaPredicted RBP17.99■□□□□ 0.47
HDAC6-213ENST00000462730 KAT6BQ8WYB5 2073 aa17.98■□□□□ 0.47
HDAC6-213ENST00000462730 DDX58O95786 925 aaKnown RBP17.98■□□□□ 0.47
HDAC6-213ENST00000462730 BMP2KLQ5H9B9 411 aa17.98■□□□□ 0.47
HDAC6-213ENST00000462730 MARCH10Q8NA82 808 aaPredicted RBP17.98■□□□□ 0.47
HDAC6-213ENST00000462730 ATG3Q9NT62 314 aa17.98■□□□□ 0.47
HDAC6-213ENST00000462730 SMARCA5O60264 1052 aaPredicted RBP17.97■□□□□ 0.47
HDAC6-213ENST00000462730 XAGE3Q8WTP9 111 aa17.97■□□□□ 0.47
HDAC6-213ENST00000462730 ERBB4Q15303 1308 aa17.97■□□□□ 0.47
HDAC6-213ENST00000462730 PNMA6EA0A0J9YXQ4 647 aa17.97■□□□□ 0.47
HDAC6-213ENST00000462730 UPF2Q9HAU5 1272 aaKnown RBP17.97■□□□□ 0.47
HDAC6-213ENST00000462730 ARFGEF2Q9Y6D5 1785 aa17.96■□□□□ 0.47
HDAC6-213ENST00000462730 ALDH1L1O75891 902 aa17.96■□□□□ 0.47
HDAC6-213ENST00000462730 COPS6Q7L5N1 327 aa17.96■□□□□ 0.47
HDAC6-213ENST00000462730 PLEKHM2Q8IWE5 1019 aa17.96■□□□□ 0.47
HDAC6-213ENST00000462730 THSD7AQ9UPZ6 1657 aa17.96■□□□□ 0.46
HDAC6-213ENST00000462730 PRIM1P49642 420 aaKnown RBP17.95■□□□□ 0.46
HDAC6-213ENST00000462730 C16orf71Q8IYS4 520 aaPredicted RBP17.95■□□□□ 0.46
HDAC6-213ENST00000462730 NBPF7P0C2Y1 421 aaPredicted RBP17.95■□□□□ 0.46
HDAC6-213ENST00000462730 EXOC6BQ9Y2D4 811 aa17.95■□□□□ 0.46
HDAC6-213ENST00000462730 NBPF26B4DH59 902 aa17.94■□□□□ 0.46
HDAC6-213ENST00000462730 NBPF14Q5TI25 921 aa17.94■□□□□ 0.46
HDAC6-213ENST00000462730 NBPF10Q6P3W6 841 aaKnown RBP17.94■□□□□ 0.46
HDAC6-213ENST00000462730 RIC3Q7Z5B4 369 aa17.94■□□□□ 0.46
HDAC6-213ENST00000462730 NBPF15Q8N660 670 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms