RNA–Protein interactions for RNA: ENST00000462597.1

PDLIM4-204, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 767 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-204ENST00000462597 MRS2Q9HD23 443 aa24.54■■□□□ 1.52
PDLIM4-204ENST00000462597 CEMIPQ8WUJ3 1361 aa24.54■■□□□ 1.52
PDLIM4-204ENST00000462597 DDR1Q08345 913 aa24.53■■□□□ 1.52
PDLIM4-204ENST00000462597 ZNF496Q96IT1 587 aaPredicted RBP24.53■■□□□ 1.52
PDLIM4-204ENST00000462597 COL15A1P39059 1388 aa24.53■■□□□ 1.52
PDLIM4-204ENST00000462597 A0A0G2JLW4 131 aa24.52■■□□□ 1.52
PDLIM4-204ENST00000462597 WDR43Q15061 677 aaKnown RBP eCLIP24.52■■□□□ 1.52
PDLIM4-204ENST00000462597 USPL1Q5W0Q7 1092 aa24.52■■□□□ 1.52
PDLIM4-204ENST00000462597 VSIG10Q8N0Z9 540 aa24.52■■□□□ 1.52
PDLIM4-204ENST00000462597 BRCA1P38398 1863 aaKnown RBP24.51■■□□□ 1.51
PDLIM4-204ENST00000462597 ZNF790Q6PG37 636 aa24.51■■□□□ 1.51
PDLIM4-204ENST00000462597 CANXP27824 592 aaKnown RBP24.5■■□□□ 1.51
PDLIM4-204ENST00000462597 HEG1Q9ULI3 1381 aa24.5■■□□□ 1.51
PDLIM4-204ENST00000462597 ZPR1O75312 459 aa24.49■■□□□ 1.51
PDLIM4-204ENST00000462597 TGFB2P61812 414 aa24.49■■□□□ 1.51
PDLIM4-204ENST00000462597 KCNQ3O43525 872 aa24.48■■□□□ 1.51
PDLIM4-204ENST00000462597 FCHSD2O94868 740 aa24.48■■□□□ 1.51
PDLIM4-204ENST00000462597 DPEP1P16444 411 aa24.48■■□□□ 1.51
PDLIM4-204ENST00000462597 AFDNP55196 1824 aaKnown RBP24.48■■□□□ 1.51
PDLIM4-204ENST00000462597 MCM10Q7L590 875 aa24.48■■□□□ 1.51
PDLIM4-204ENST00000462597 DLG5Q8TDM6 1919 aa24.47■■□□□ 1.51
PDLIM4-204ENST00000462597 ATP10DQ9P241 1426 aa24.47■■□□□ 1.51
PDLIM4-204ENST00000462597 MIER1Q8N108 512 aa24.47■■□□□ 1.51
PDLIM4-204ENST00000462597 POLRMTO00411 1230 aaKnown RBP24.46■■□□□ 1.51
PDLIM4-204ENST00000462597 STARD3NLO95772 234 aa24.46■■□□□ 1.51
PDLIM4-204ENST00000462597 DCTN1Q14203 1278 aa24.46■■□□□ 1.51
PDLIM4-204ENST00000462597 BCL2L12Q9HB09 334 aa24.46■■□□□ 1.51
PDLIM4-204ENST00000462597 NARFQ9UHQ1 456 aa24.46■■□□□ 1.51
PDLIM4-204ENST00000462597 BCS1LQ9Y276 419 aa24.46■■□□□ 1.51
PDLIM4-204ENST00000462597 BTBD11A6QL63 1104 aa24.45■■□□□ 1.5
PDLIM4-204ENST00000462597 TM4SF1P30408 202 aa24.45■■□□□ 1.5
PDLIM4-204ENST00000462597 SCN7AQ01118 1682 aa24.45■■□□□ 1.5
PDLIM4-204ENST00000462597 ADCY9O60503 1353 aa24.44■■□□□ 1.5
PDLIM4-204ENST00000462597 RTF1Q92541 710 aaKnown RBP24.44■■□□□ 1.5
PDLIM4-204ENST00000462597 FMNL2Q96PY5 1086 aa24.44■■□□□ 1.5
PDLIM4-204ENST00000462597 NRXN2Q9P2S2 1712 aa24.44■■□□□ 1.5
PDLIM4-204ENST00000462597 NFIXQ14938 502 aa24.43■■□□□ 1.5
PDLIM4-204ENST00000462597 ADAMTS8Q9UP79 889 aa24.43■■□□□ 1.5
PDLIM4-204ENST00000462597 CCER2I3L3R5 266 aa24.42■■□□□ 1.5
PDLIM4-204ENST00000462597 KCNA3P22001 575 aa24.42■■□□□ 1.5
PDLIM4-204ENST00000462597 EIF5P55010 431 aaKnown RBP24.42■■□□□ 1.5
PDLIM4-204ENST00000462597 ZNF330Q9Y3S2 320 aaPredicted RBP24.42■■□□□ 1.5
PDLIM4-204ENST00000462597 ARFGEF1Q9Y6D6 1849 aa24.42■■□□□ 1.5
PDLIM4-204ENST00000462597 PNISRQ8TF01 805 aaKnown RBP24.41■■□□□ 1.5
PDLIM4-204ENST00000462597 PNNQ9H307 717 aaKnown RBP24.41■■□□□ 1.5
PDLIM4-204ENST00000462597 PRAMEF22A3QJZ6 481 aa24.4■■□□□ 1.5
PDLIM4-204ENST00000462597 GIGYF1O75420 1035 aaPredicted RBP24.4■■□□□ 1.5
PDLIM4-204ENST00000462597 A1BGP04217 495 aa24.4■■□□□ 1.5
PDLIM4-204ENST00000462597 NEFMP07197 916 aa24.4■■□□□ 1.5
PDLIM4-204ENST00000462597 CHRNA5P30532 468 aa24.4■■□□□ 1.5
PDLIM4-204ENST00000462597 CCDC146Q8IYE0 955 aa24.4■■□□□ 1.5
PDLIM4-204ENST00000462597 PLEKHF1Q96S99 279 aa24.4■■□□□ 1.5
PDLIM4-204ENST00000462597 MAPK8IP3Q9UPT6 1336 aa24.39■■□□□ 1.5
PDLIM4-204ENST00000462597 ZNF526Q8TF50 670 aaPredicted RBP24.39■■□□□ 1.49
PDLIM4-204ENST00000462597 TEX13AQ9BXU3 409 aaPredicted RBP24.39■■□□□ 1.49
PDLIM4-204ENST00000462597 C1QTNF8P60827 252 aa24.38■■□□□ 1.49
PDLIM4-204ENST00000462597 BCORQ6W2J9 1755 aa24.37■■□□□ 1.49
PDLIM4-204ENST00000462597 PIP4K2AP48426 406 aaPredicted RBP24.37■■□□□ 1.49
PDLIM4-204ENST00000462597 BICDL1Q6ZP65 573 aa24.37■■□□□ 1.49
PDLIM4-204ENST00000462597 TBC1D2BQ9UPU7 963 aa24.37■■□□□ 1.49
PDLIM4-204ENST00000462597 A0A087WZG4 1122 aa24.36■■□□□ 1.49
PDLIM4-204ENST00000462597 ARHGAP27Q6ZUM4 889 aa24.36■■□□□ 1.49
PDLIM4-204ENST00000462597 FAM9BQ8IZU0 186 aa24.36■■□□□ 1.49
PDLIM4-204ENST00000462597 PIM2Q9P1W9 311 aa24.36■■□□□ 1.49
PDLIM4-204ENST00000462597 USP16Q9Y5T5 823 aa24.36■■□□□ 1.49
PDLIM4-204ENST00000462597 CARMIL3Q8ND23 1372 aa24.36■■□□□ 1.49
PDLIM4-204ENST00000462597 DLEC1Q9Y238 1755 aa24.36■■□□□ 1.49
PDLIM4-204ENST00000462597 KDM3BQ7LBC6 1761 aa24.35■■□□□ 1.49
PDLIM4-204ENST00000462597 HTATSF1O43719 755 aaKnown RBP24.35■■□□□ 1.49
PDLIM4-204ENST00000462597 SERPINB2P05120 415 aa24.35■■□□□ 1.49
PDLIM4-204ENST00000462597 IL6STP40189 918 aaPredicted RBP24.35■■□□□ 1.49
PDLIM4-204ENST00000462597 TBC1D9BQ66K14 1250 aa24.34■■□□□ 1.49
PDLIM4-204ENST00000462597 RUNDC1Q96C34 613 aa24.34■■□□□ 1.49
PDLIM4-204ENST00000462597 MIS18AQ9NYP9 233 aa24.34■■□□□ 1.49
PDLIM4-204ENST00000462597 ANKRD31Q8N7Z5 1873 aa24.34■■□□□ 1.49
PDLIM4-204ENST00000462597 LAMB4A4D0S4 1761 aa24.34■■□□□ 1.49
PDLIM4-204ENST00000462597 DALRD3Q5D0E6 543 aaKnown RBP24.33■■□□□ 1.49
PDLIM4-204ENST00000462597 GPBP1L1Q9HC44 474 aaPredicted RBP24.33■■□□□ 1.49
PDLIM4-204ENST00000462597 THUMPD2Q9BTF0 503 aaKnown RBP24.32■■□□□ 1.48
PDLIM4-204ENST00000462597 SNRPA1P09661 255 aaKnown RBP24.31■■□□□ 1.48
PDLIM4-204ENST00000462597 TAF7Q15545 349 aaPredicted RBP24.31■■□□□ 1.48
PDLIM4-204ENST00000462597 NFE2L2Q16236 605 aa24.31■■□□□ 1.48
PDLIM4-204ENST00000462597 COL11A2P13942 1736 aaPredicted RBP24.3■■□□□ 1.48
PDLIM4-204ENST00000462597 CAMTA2O94983 1202 aa24.3■■□□□ 1.48
PDLIM4-204ENST00000462597 SENP3-EIF4A1A0A087X0R7 540 aa24.29■■□□□ 1.48
PDLIM4-204ENST00000462597 DZIP3Q86Y13 1208 aaKnown RBP24.29■■□□□ 1.48
PDLIM4-204ENST00000462597 CCDC24Q8N4L8 307 aa24.29■■□□□ 1.48
PDLIM4-204ENST00000462597 NPM2Q86SE8 214 aaKnown RBP24.28■■□□□ 1.48
PDLIM4-204ENST00000462597 RRP7AQ9Y3A4 280 aaKnown RBP24.27■■□□□ 1.48
PDLIM4-204ENST00000462597 NBPF26B4DH59 902 aa24.26■■□□□ 1.47
PDLIM4-204ENST00000462597 TMPOP42166 694 aaKnown RBP24.26■■□□□ 1.47
PDLIM4-204ENST00000462597 NBPF10Q6P3W6 841 aaKnown RBP24.26■■□□□ 1.47
PDLIM4-204ENST00000462597 C2CD5Q86YS7 1000 aa24.26■■□□□ 1.47
PDLIM4-204ENST00000462597 NBPF15Q8N660 670 aa24.26■■□□□ 1.47
PDLIM4-204ENST00000462597 APAF1O14727 1248 aa24.25■■□□□ 1.47
PDLIM4-204ENST00000462597 NEUROD2Q15784 382 aa24.25■■□□□ 1.47
PDLIM4-204ENST00000462597 PRR5LQ6MZQ0 368 aa24.25■■□□□ 1.47
PDLIM4-204ENST00000462597 SBF1O95248 1867 aa24.25■■□□□ 1.47
PDLIM4-204ENST00000462597 RIPK4P57078 832 aa24.24■■□□□ 1.47
PDLIM4-204ENST00000462597 C9orf131Q5VYM1 1079 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms