RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 C9orf131Q5VYM1 1079 aa20.66■□□□□ 0.9
SKA3-204ENST00000462482 NPM2Q86SE8 214 aaKnown RBP20.66■□□□□ 0.9
SKA3-204ENST00000462482 TEX13AQ9BXU3 409 aaPredicted RBP20.66■□□□□ 0.9
SKA3-204ENST00000462482 CHRNA5P30532 468 aa20.65■□□□□ 0.9
SKA3-204ENST00000462482 NFIXQ14938 502 aa20.64■□□□□ 0.89
SKA3-204ENST00000462482 NUDCQ9Y266 331 aa20.64■□□□□ 0.89
SKA3-204ENST00000462482 TOMM70O94826 608 aa20.63■□□□□ 0.89
SKA3-204ENST00000462482 C16orf71Q8IYS4 520 aaPredicted RBP20.63■□□□□ 0.89
SKA3-204ENST00000462482 TJP1Q07157 1748 aa20.63■□□□□ 0.89
SKA3-204ENST00000462482 KIF13BQ9NQT8 1826 aa20.62■□□□□ 0.89
SKA3-204ENST00000462482 SCN11AQ9UI33 1791 aa20.62■□□□□ 0.89
SKA3-204ENST00000462482 SERPINB2P05120 415 aa20.62■□□□□ 0.89
SKA3-204ENST00000462482 ZNF790Q6PG37 636 aa20.62■□□□□ 0.89
SKA3-204ENST00000462482 RNF181Q9P0P0 153 aa20.62■□□□□ 0.89
SKA3-204ENST00000462482 KDM2BQ8NHM5 1336 aa20.61■□□□□ 0.89
SKA3-204ENST00000462482 ZNF330Q9Y3S2 320 aaPredicted RBP20.61■□□□□ 0.89
SKA3-204ENST00000462482 KCPQ6ZWJ8 1503 aa20.61■□□□□ 0.89
SKA3-204ENST00000462482 N4BP2Q86UW6 1770 aaPredicted RBP20.6■□□□□ 0.89
SKA3-204ENST00000462482 MYH14Q7Z406 1995 aaKnown RBP20.6■□□□□ 0.89
SKA3-204ENST00000462482 IL17REQ8NFR9 667 aa20.6■□□□□ 0.89
SKA3-204ENST00000462482 ZNF496Q96IT1 587 aaPredicted RBP20.6■□□□□ 0.89
SKA3-204ENST00000462482 FMNL2Q96PY5 1086 aa20.6■□□□□ 0.89
SKA3-204ENST00000462482 BICDL1Q6ZP65 573 aa20.59■□□□□ 0.89
SKA3-204ENST00000462482 NMRK2Q9NPI5 230 aa20.59■□□□□ 0.89
SKA3-204ENST00000462482 HEG1Q9ULI3 1381 aa20.59■□□□□ 0.89
SKA3-204ENST00000462482 KIAA1551Q9HCM1 1747 aa20.58■□□□□ 0.89
SKA3-204ENST00000462482 COL3A1P02461 1466 aaPredicted RBP20.58■□□□□ 0.89
SKA3-204ENST00000462482 H0YIN7 160 aa20.58■□□□□ 0.89
SKA3-204ENST00000462482 PRKAR2BP31323 418 aa20.58■□□□□ 0.89
SKA3-204ENST00000462482 APLP1P51693 650 aa20.58■□□□□ 0.89
SKA3-204ENST00000462482 EIF5P55010 431 aaKnown RBP20.58■□□□□ 0.89
SKA3-204ENST00000462482 RTF1Q92541 710 aaKnown RBP20.58■□□□□ 0.89
SKA3-204ENST00000462482 BCL2L12Q9HB09 334 aa20.58■□□□□ 0.89
SKA3-204ENST00000462482 BTBD11A6QL63 1104 aa20.57■□□□□ 0.88
SKA3-204ENST00000462482 NPHP1O15259 732 aa20.57■□□□□ 0.88
SKA3-204ENST00000462482 C2CD5Q86YS7 1000 aa20.57■□□□□ 0.88
SKA3-204ENST00000462482 TTLL6Q8N841 843 aa20.57■□□□□ 0.88
SKA3-204ENST00000462482 U2AF1L5P0DN76 240 aaPredicted RBP20.56■□□□□ 0.88
SKA3-204ENST00000462482 IL6STP40189 918 aaPredicted RBP20.56■□□□□ 0.88
SKA3-204ENST00000462482 U2AF1Q01081 240 aaKnown RBP eCLIP20.56■□□□□ 0.88
SKA3-204ENST00000462482 PDZRN3Q9UPQ7 1066 aa20.56■□□□□ 0.88
SKA3-204ENST00000462482 RBM46Q8TBY0 533 aaKnown RBP20.55■□□□□ 0.88
SKA3-204ENST00000462482 RSPH6AQ9H0K4 717 aa20.54■□□□□ 0.88
SKA3-204ENST00000462482 TBC1D2BQ9UPU7 963 aa20.54■□□□□ 0.88
SKA3-204ENST00000462482 PDE6BP35913 854 aa20.53■□□□□ 0.88
SKA3-204ENST00000462482 PHACTR3Q96KR7 559 aa20.53■□□□□ 0.88
SKA3-204ENST00000462482 ADAMTS7Q9UKP4 1686 aa20.53■□□□□ 0.88
SKA3-204ENST00000462482 ZC3H4Q9UPT8 1303 aaKnown RBP20.53■□□□□ 0.88
SKA3-204ENST00000462482 CEMIPQ8WUJ3 1361 aa20.52■□□□□ 0.88
SKA3-204ENST00000462482 NEFMP07197 916 aa20.52■□□□□ 0.88
SKA3-204ENST00000462482 LMNB1P20700 586 aa20.52■□□□□ 0.88
SKA3-204ENST00000462482 TBC1D9BQ66K14 1250 aa20.52■□□□□ 0.88
SKA3-204ENST00000462482 SETDB2Q96T68 719 aa20.52■□□□□ 0.88
SKA3-204ENST00000462482 CARMIL3Q8ND23 1372 aa20.51■□□□□ 0.87
SKA3-204ENST00000462482 A1BGP04217 495 aa20.51■□□□□ 0.87
SKA3-204ENST00000462482 PPP2R1AP30153 589 aa20.51■□□□□ 0.87
SKA3-204ENST00000462482 RASSF7Q02833 373 aa20.51■□□□□ 0.87
SKA3-204ENST00000462482 ZNF622Q969S3 477 aaKnown RBP eCLIP20.51■□□□□ 0.87
SKA3-204ENST00000462482 BRIP1Q9BX63 1249 aa20.51■□□□□ 0.87
SKA3-204ENST00000462482 RRAGCQ9HB90 399 aa20.51■□□□□ 0.87
SKA3-204ENST00000462482 FSTL1Q12841 308 aa20.5■□□□□ 0.87
SKA3-204ENST00000462482 ST5P78524 1137 aa20.49■□□□□ 0.87
SKA3-204ENST00000462482 DZIP3Q86Y13 1208 aaKnown RBP20.49■□□□□ 0.87
SKA3-204ENST00000462482 CNBD1Q8NA66 436 aa20.49■□□□□ 0.87
SKA3-204ENST00000462482 SNRPA1P09661 255 aaKnown RBP20.48■□□□□ 0.87
SKA3-204ENST00000462482 ZNF652Q9Y2D9 606 aa20.48■□□□□ 0.87
SKA3-204ENST00000462482 KCNQ3O43525 872 aa20.47■□□□□ 0.87
SKA3-204ENST00000462482 HTATSF1O43719 755 aaKnown RBP20.47■□□□□ 0.87
SKA3-204ENST00000462482 PRR5LQ6MZQ0 368 aa20.47■□□□□ 0.87
SKA3-204ENST00000462482 MCM10Q7L590 875 aa20.47■□□□□ 0.87
SKA3-204ENST00000462482 ARFGEF1Q9Y6D6 1849 aa20.46■□□□□ 0.87
SKA3-204ENST00000462482 CAMTA2O94983 1202 aa20.46■□□□□ 0.87
SKA3-204ENST00000462482 BRCA1P38398 1863 aaKnown RBP20.45■□□□□ 0.86
SKA3-204ENST00000462482 UBR2Q8IWV8 1755 aa20.45■□□□□ 0.86
SKA3-204ENST00000462482 GLTPD2A6NH11 291 aa20.45■□□□□ 0.86
SKA3-204ENST00000462482 IFFO2Q5TF58 517 aa20.45■□□□□ 0.86
SKA3-204ENST00000462482 DPY19L2Q6NUT2 758 aa20.45■□□□□ 0.86
SKA3-204ENST00000462482 SMC1BQ8NDV3 1235 aa20.45■□□□□ 0.86
SKA3-204ENST00000462482 CNKSR1Q969H4 720 aa20.45■□□□□ 0.86
SKA3-204ENST00000462482 ZNF219Q9P2Y4 722 aaPredicted RBP20.45■□□□□ 0.86
SKA3-204ENST00000462482 USP16Q9Y5T5 823 aa20.45■□□□□ 0.86
SKA3-204ENST00000462482 C21orf2O43822 256 aa20.44■□□□□ 0.86
SKA3-204ENST00000462482 VEGFAP15692 232 aaPredicted RBP20.44■□□□□ 0.86
SKA3-204ENST00000462482 CCDC24Q8N4L8 307 aa20.44■□□□□ 0.86
SKA3-204ENST00000462482 SOGA3Q5TF21 947 aa20.43■□□□□ 0.86
SKA3-204ENST00000462482 CLEC4GQ6UXB4 293 aa20.43■□□□□ 0.86
SKA3-204ENST00000462482 NBPF5PQ86XG9 351 aaPredicted RBP20.43■□□□□ 0.86
SKA3-204ENST00000462482 NFKBIEO00221 500 aa20.42■□□□□ 0.86
SKA3-204ENST00000462482 TAF7Q15545 349 aaPredicted RBP20.42■□□□□ 0.86
SKA3-204ENST00000462482 NRXN2Q9P2S2 1712 aa20.41■□□□□ 0.86
SKA3-204ENST00000462482 CEP350Q5VT06 3117 aa20.41■□□□□ 0.86
SKA3-204ENST00000462482 PIP4K2AP48426 406 aaPredicted RBP20.41■□□□□ 0.86
SKA3-204ENST00000462482 DCTN1Q14203 1278 aa20.41■□□□□ 0.86
SKA3-204ENST00000462482 STYK1Q6J9G0 422 aa20.41■□□□□ 0.86
SKA3-204ENST00000462482 PNISRQ8TF01 805 aaKnown RBP20.41■□□□□ 0.86
SKA3-204ENST00000462482 MASTLQ96GX5 879 aa20.41■□□□□ 0.86
SKA3-204ENST00000462482 ERFEQ4G0M1 354 aa20.4■□□□□ 0.86
SKA3-204ENST00000462482 TAOK3Q9H2K8 898 aa20.4■□□□□ 0.86
SKA3-204ENST00000462482 PNNQ9H307 717 aaKnown RBP20.4■□□□□ 0.86
SKA3-204ENST00000462482 PRAMEF22A3QJZ6 481 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms