RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CHRNA5P30532 468 aa21.72■■□□□ 1.07
COL7A1-204ENST00000462475 PIM2Q9P1W9 311 aa21.72■■□□□ 1.07
COL7A1-204ENST00000462475 VSIG10Q8N0Z9 540 aa21.71■■□□□ 1.07
COL7A1-204ENST00000462475 NARFQ9UHQ1 456 aa21.71■■□□□ 1.07
COL7A1-204ENST00000462475 HSPA6P17066 643 aa21.7■■□□□ 1.06
COL7A1-204ENST00000462475 NFIXQ14938 502 aa21.7■■□□□ 1.06
COL7A1-204ENST00000462475 DALRD3Q5D0E6 543 aaKnown RBP21.7■■□□□ 1.06
COL7A1-204ENST00000462475 BCL2L12Q9HB09 334 aa21.7■■□□□ 1.06
COL7A1-204ENST00000462475 ARFGEF1Q9Y6D6 1849 aa21.69■■□□□ 1.06
COL7A1-204ENST00000462475 IL17REQ8NFR9 667 aa21.69■■□□□ 1.06
COL7A1-204ENST00000462475 GAS2L2Q8NHY3 880 aa21.69■■□□□ 1.06
COL7A1-204ENST00000462475 CANXP27824 592 aaKnown RBP21.68■■□□□ 1.06
COL7A1-204ENST00000462475 C9orf131Q5VYM1 1079 aa21.68■■□□□ 1.06
COL7A1-204ENST00000462475 TTC5Q8N0Z6 440 aa21.68■■□□□ 1.06
COL7A1-204ENST00000462475 GNAT3A8MTJ3 354 aa21.67■■□□□ 1.06
COL7A1-204ENST00000462475 TEFQ10587 303 aa21.67■■□□□ 1.06
COL7A1-204ENST00000462475 ZNF496Q96IT1 587 aaPredicted RBP21.66■■□□□ 1.06
COL7A1-204ENST00000462475 NMRK2Q9NPI5 230 aa21.66■■□□□ 1.06
COL7A1-204ENST00000462475 NRXN2Q9P2S2 1712 aa21.66■■□□□ 1.06
COL7A1-204ENST00000462475 HEG1Q9ULI3 1381 aa21.65■■□□□ 1.06
COL7A1-204ENST00000462475 ZNF790Q6PG37 636 aa21.65■■□□□ 1.06
COL7A1-204ENST00000462475 STARD3NLO95772 234 aa21.64■■□□□ 1.05
COL7A1-204ENST00000462475 SERPINB2P05120 415 aa21.64■■□□□ 1.05
COL7A1-204ENST00000462475 EIF5P55010 431 aaKnown RBP21.64■■□□□ 1.05
COL7A1-204ENST00000462475 PHACTR3Q96KR7 559 aa21.64■■□□□ 1.05
COL7A1-204ENST00000462475 AFDNP55196 1824 aaKnown RBP21.64■■□□□ 1.05
COL7A1-204ENST00000462475 SIPA1L3O60292 1781 aaPredicted RBP21.64■■□□□ 1.05
COL7A1-204ENST00000462475 CARMIL3Q8ND23 1372 aa21.63■■□□□ 1.05
COL7A1-204ENST00000462475 CEMIPQ8WUJ3 1361 aa21.63■■□□□ 1.05
COL7A1-204ENST00000462475 PRKAR2BP31323 418 aa21.63■■□□□ 1.05
COL7A1-204ENST00000462475 RSPH6AQ9H0K4 717 aa21.63■■□□□ 1.05
COL7A1-204ENST00000462475 RNF181Q9P0P0 153 aa21.62■■□□□ 1.05
COL7A1-204ENST00000462475 BICDL1Q6ZP65 573 aa21.61■■□□□ 1.05
COL7A1-204ENST00000462475 CFAP53Q96M91 514 aa21.61■■□□□ 1.05
COL7A1-204ENST00000462475 TOMM70O94826 608 aa21.6■■□□□ 1.05
COL7A1-204ENST00000462475 ZNF330Q9Y3S2 320 aaPredicted RBP21.6■■□□□ 1.05
COL7A1-204ENST00000462475 SCN7AQ01118 1682 aa21.6■■□□□ 1.05
COL7A1-204ENST00000462475 A0A087WZG4 1122 aa21.59■■□□□ 1.05
COL7A1-204ENST00000462475 KCNQ3O43525 872 aa21.59■■□□□ 1.05
COL7A1-204ENST00000462475 RASSF7Q02833 373 aa21.59■■□□□ 1.05
COL7A1-204ENST00000462475 FMNL2Q96PY5 1086 aa21.59■■□□□ 1.05
COL7A1-204ENST00000462475 TBC1D9BQ66K14 1250 aa21.58■■□□□ 1.05
COL7A1-204ENST00000462475 TEX13AQ9BXU3 409 aaPredicted RBP21.58■■□□□ 1.05
COL7A1-204ENST00000462475 DLEC1Q9Y238 1755 aa21.57■■□□□ 1.04
COL7A1-204ENST00000462475 PPP2R1AP30153 589 aa21.57■■□□□ 1.04
COL7A1-204ENST00000462475 IL6STP40189 918 aaPredicted RBP21.57■■□□□ 1.04
COL7A1-204ENST00000462475 C2CD5Q86YS7 1000 aa21.57■■□□□ 1.04
COL7A1-204ENST00000462475 TBC1D2BQ9UPU7 963 aa21.57■■□□□ 1.04
COL7A1-204ENST00000462475 BTBD11A6QL63 1104 aa21.56■■□□□ 1.04
COL7A1-204ENST00000462475 A1BGP04217 495 aa21.56■■□□□ 1.04
COL7A1-204ENST00000462475 NUDCQ9Y266 331 aa21.56■■□□□ 1.04
COL7A1-204ENST00000462475 U2AF1L5P0DN76 240 aaPredicted RBP21.55■■□□□ 1.04
COL7A1-204ENST00000462475 U2AF1Q01081 240 aaKnown RBP eCLIP21.55■■□□□ 1.04
COL7A1-204ENST00000462475 TTLL6Q8N841 843 aa21.55■■□□□ 1.04
COL7A1-204ENST00000462475 KDM2BQ8NHM5 1336 aa21.55■■□□□ 1.04
COL7A1-204ENST00000462475 H0YIN7 160 aa21.54■■□□□ 1.04
COL7A1-204ENST00000462475 APLP1P51693 650 aa21.54■■□□□ 1.04
COL7A1-204ENST00000462475 PRELPP51888 382 aa21.54■■□□□ 1.04
COL7A1-204ENST00000462475 CCDC24Q8N4L8 307 aa21.54■■□□□ 1.04
COL7A1-204ENST00000462475 CAMTA2O94983 1202 aa21.53■■□□□ 1.04
COL7A1-204ENST00000462475 PRR5LQ6MZQ0 368 aa21.53■■□□□ 1.04
COL7A1-204ENST00000462475 MCM10Q7L590 875 aa21.53■■□□□ 1.04
COL7A1-204ENST00000462475 RBM46Q8TBY0 533 aaKnown RBP21.53■■□□□ 1.04
COL7A1-204ENST00000462475 SBF1O95248 1867 aa21.53■■□□□ 1.04
COL7A1-204ENST00000462475 ANKRD31Q8N7Z5 1873 aa21.52■■□□□ 1.04
COL7A1-204ENST00000462475 PRAMEF22A3QJZ6 481 aa21.52■■□□□ 1.04
COL7A1-204ENST00000462475 PIP4K2AP48426 406 aaPredicted RBP21.52■■□□□ 1.04
COL7A1-204ENST00000462475 USP16Q9Y5T5 823 aa21.52■■□□□ 1.04
COL7A1-204ENST00000462475 NFKBIEO00221 500 aa21.51■■□□□ 1.03
COL7A1-204ENST00000462475 LMNB1P20700 586 aa21.51■■□□□ 1.03
COL7A1-204ENST00000462475 C16orf71Q8IYS4 520 aaPredicted RBP21.51■■□□□ 1.03
COL7A1-204ENST00000462475 RRAGCQ9HB90 399 aa21.51■■□□□ 1.03
COL7A1-204ENST00000462475 COL11A2P13942 1736 aaPredicted RBP21.5■■□□□ 1.03
COL7A1-204ENST00000462475 DCTN1Q14203 1278 aa21.5■■□□□ 1.03
COL7A1-204ENST00000462475 RTF1Q92541 710 aaKnown RBP21.5■■□□□ 1.03
COL7A1-204ENST00000462475 BRIP1Q9BX63 1249 aa21.5■■□□□ 1.03
COL7A1-204ENST00000462475 ZC3H4Q9UPT8 1303 aaKnown RBP21.5■■□□□ 1.03
COL7A1-204ENST00000462475 TNRC6CQ9HCJ0 1690 aaKnown RBP21.5■■□□□ 1.03
COL7A1-204ENST00000462475 NPM2Q86SE8 214 aaKnown RBP21.49■■□□□ 1.03
COL7A1-204ENST00000462475 DZIP3Q86Y13 1208 aaKnown RBP21.49■■□□□ 1.03
COL7A1-204ENST00000462475 ZNF622Q969S3 477 aaKnown RBP eCLIP21.49■■□□□ 1.03
COL7A1-204ENST00000462475 BCORQ6W2J9 1755 aa21.48■■□□□ 1.03
COL7A1-204ENST00000462475 PDE6BP35913 854 aa21.48■■□□□ 1.03
COL7A1-204ENST00000462475 CNBD1Q8NA66 436 aa21.48■■□□□ 1.03
COL7A1-204ENST00000462475 SETDB2Q96T68 719 aa21.48■■□□□ 1.03
COL7A1-204ENST00000462475 DNAJC5GQ8N7S2 189 aa21.47■■□□□ 1.03
COL7A1-204ENST00000462475 TIAM2Q8IVF5 1701 aa21.46■■□□□ 1.03
COL7A1-204ENST00000462475 SNRPA1P09661 255 aaKnown RBP21.46■■□□□ 1.03
COL7A1-204ENST00000462475 FSTL1Q12841 308 aa21.46■■□□□ 1.03
COL7A1-204ENST00000462475 ZNF219Q9P2Y4 722 aaPredicted RBP21.46■■□□□ 1.03
COL7A1-204ENST00000462475 PDZRN3Q9UPQ7 1066 aa21.46■■□□□ 1.03
COL7A1-204ENST00000462475 C21orf2O43822 256 aa21.45■■□□□ 1.02
COL7A1-204ENST00000462475 HTRA3P83110 453 aa21.45■■□□□ 1.02
COL7A1-204ENST00000462475 WDR90Q96KV7 1748 aa21.45■■□□□ 1.02
COL7A1-204ENST00000462475 GLTPD2A6NH11 291 aa21.44■■□□□ 1.02
COL7A1-204ENST00000462475 NPHP1O15259 732 aa21.44■■□□□ 1.02
COL7A1-204ENST00000462475 HTATSF1O43719 755 aaKnown RBP21.44■■□□□ 1.02
COL7A1-204ENST00000462475 IFFO2Q5TF58 517 aa21.44■■□□□ 1.02
COL7A1-204ENST00000462475 NBPF26B4DH59 902 aa21.43■■□□□ 1.02
COL7A1-204ENST00000462475 ST5P78524 1137 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms