RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 TM4SF1P30408 202 aa25.25■■□□□ 1.63
VARS-220ENST00000461874 TEX13AQ9BXU3 409 aaPredicted RBP25.25■■□□□ 1.63
VARS-220ENST00000461874 COL15A1P39059 1388 aa25.25■■□□□ 1.63
VARS-220ENST00000461874 BTBD11A6QL63 1104 aa25.24■■□□□ 1.63
VARS-220ENST00000461874 CANXP27824 592 aaKnown RBP25.24■■□□□ 1.63
VARS-220ENST00000461874 RTF1Q92541 710 aaKnown RBP25.24■■□□□ 1.63
VARS-220ENST00000461874 FMNL2Q96PY5 1086 aa25.24■■□□□ 1.63
VARS-220ENST00000461874 KIF13BQ9NQT8 1826 aa25.23■■□□□ 1.63
VARS-220ENST00000461874 KCNQ3O43525 872 aa25.23■■□□□ 1.63
VARS-220ENST00000461874 MCM10Q7L590 875 aa25.23■■□□□ 1.63
VARS-220ENST00000461874 POLRMTO00411 1230 aaKnown RBP25.22■■□□□ 1.63
VARS-220ENST00000461874 HTATSF1O43719 755 aaKnown RBP25.22■■□□□ 1.63
VARS-220ENST00000461874 DPEP1P16444 411 aa25.22■■□□□ 1.63
VARS-220ENST00000461874 EIF5P55010 431 aaKnown RBP25.22■■□□□ 1.63
VARS-220ENST00000461874 SIPA1L3O60292 1781 aaPredicted RBP25.22■■□□□ 1.63
VARS-220ENST00000461874 BCL2L12Q9HB09 334 aa25.2■■□□□ 1.62
VARS-220ENST00000461874 DCTN1Q14203 1278 aa25.19■■□□□ 1.62
VARS-220ENST00000461874 KIAA1551Q9HCM1 1747 aa25.18■■□□□ 1.62
VARS-220ENST00000461874 A0A087WZG4 1122 aa25.18■■□□□ 1.62
VARS-220ENST00000461874 KCNA3P22001 575 aa25.18■■□□□ 1.62
VARS-220ENST00000461874 NFIXQ14938 502 aa25.18■■□□□ 1.62
VARS-220ENST00000461874 RALBP1Q15311 655 aa25.18■■□□□ 1.62
VARS-220ENST00000461874 BCS1LQ9Y276 419 aa25.18■■□□□ 1.62
VARS-220ENST00000461874 NEFMP07197 916 aa25.17■■□□□ 1.62
VARS-220ENST00000461874 DDX10Q13206 875 aaKnown RBP25.17■■□□□ 1.62
VARS-220ENST00000461874 PLEKHF1Q96S99 279 aa25.17■■□□□ 1.62
VARS-220ENST00000461874 A1BGP04217 495 aa25.16■■□□□ 1.62
VARS-220ENST00000461874 IL6STP40189 918 aaPredicted RBP25.16■■□□□ 1.62
VARS-220ENST00000461874 N4BP2Q86UW6 1770 aaPredicted RBP25.15■■□□□ 1.62
VARS-220ENST00000461874 TAF7Q15545 349 aaPredicted RBP25.13■■□□□ 1.61
VARS-220ENST00000461874 PNNQ9H307 717 aaKnown RBP25.13■■□□□ 1.61
VARS-220ENST00000461874 PIM2Q9P1W9 311 aa25.13■■□□□ 1.61
VARS-220ENST00000461874 USP16Q9Y5T5 823 aa25.13■■□□□ 1.61
VARS-220ENST00000461874 ADCY9O60503 1353 aa25.13■■□□□ 1.61
VARS-220ENST00000461874 ATP10DQ9P241 1426 aa25.12■■□□□ 1.61
VARS-220ENST00000461874 SERPINB2P05120 415 aa25.12■■□□□ 1.61
VARS-220ENST00000461874 SNRPA1P09661 255 aaKnown RBP25.12■■□□□ 1.61
VARS-220ENST00000461874 TBC1D2BQ9UPU7 963 aa25.12■■□□□ 1.61
VARS-220ENST00000461874 ZNF330Q9Y3S2 320 aaPredicted RBP25.12■■□□□ 1.61
VARS-220ENST00000461874 PRAMEF22A3QJZ6 481 aa25.11■■□□□ 1.61
VARS-220ENST00000461874 NFE2L2Q16236 605 aa25.11■■□□□ 1.61
VARS-220ENST00000461874 GIGYF1O75420 1035 aaPredicted RBP25.1■■□□□ 1.61
VARS-220ENST00000461874 CHRNA5P30532 468 aa25.1■■□□□ 1.61
VARS-220ENST00000461874 C1QTNF8P60827 252 aa25.09■■□□□ 1.61
VARS-220ENST00000461874 DALRD3Q5D0E6 543 aaKnown RBP25.09■■□□□ 1.61
VARS-220ENST00000461874 BICDL1Q6ZP65 573 aa25.09■■□□□ 1.61
VARS-220ENST00000461874 ARHGAP27Q6ZUM4 889 aa25.09■■□□□ 1.61
VARS-220ENST00000461874 NPM2Q86SE8 214 aaKnown RBP25.09■■□□□ 1.61
VARS-220ENST00000461874 MIS18AQ9NYP9 233 aa25.09■■□□□ 1.61
VARS-220ENST00000461874 TBC1D9BQ66K14 1250 aa25.08■■□□□ 1.61
VARS-220ENST00000461874 MAPK8IP3Q9UPT6 1336 aa25.08■■□□□ 1.6
VARS-220ENST00000461874 CAMTA2O94983 1202 aa25.06■■□□□ 1.6
VARS-220ENST00000461874 PIP4K2AP48426 406 aaPredicted RBP25.06■■□□□ 1.6
VARS-220ENST00000461874 PNISRQ8TF01 805 aaKnown RBP25.06■■□□□ 1.6
VARS-220ENST00000461874 BRCA1P38398 1863 aaKnown RBP25.06■■□□□ 1.6
VARS-220ENST00000461874 MYBBP1AQ9BQG0 1328 aaKnown RBP25.06■■□□□ 1.6
VARS-220ENST00000461874 GPBP1L1Q9HC44 474 aaPredicted RBP25.05■■□□□ 1.6
VARS-220ENST00000461874 NRXN2Q9P2S2 1712 aa25.05■■□□□ 1.6
VARS-220ENST00000461874 DZIP3Q86Y13 1208 aaKnown RBP25.04■■□□□ 1.6
VARS-220ENST00000461874 THUMPD2Q9BTF0 503 aaKnown RBP25.04■■□□□ 1.6
VARS-220ENST00000461874 AFDNP55196 1824 aaKnown RBP25.03■■□□□ 1.6
VARS-220ENST00000461874 ZNF526Q8TF50 670 aaPredicted RBP25.03■■□□□ 1.6
VARS-220ENST00000461874 NBPF26B4DH59 902 aa25.02■■□□□ 1.6
VARS-220ENST00000461874 NBPF10Q6P3W6 841 aaKnown RBP25.02■■□□□ 1.6
VARS-220ENST00000461874 NBPF15Q8N660 670 aa25.02■■□□□ 1.6
VARS-220ENST00000461874 SETDB2Q96T68 719 aa25.01■■□□□ 1.59
VARS-220ENST00000461874 CARMIL3Q8ND23 1372 aa25.01■■□□□ 1.59
VARS-220ENST00000461874 SCN7AQ01118 1682 aa25.01■■□□□ 1.59
VARS-220ENST00000461874 C2CD5Q86YS7 1000 aa25■■□□□ 1.59
VARS-220ENST00000461874 DLG5Q8TDM6 1919 aa25■■□□□ 1.59
VARS-220ENST00000461874 H0YIN7 160 aa24.99■■□□□ 1.59
VARS-220ENST00000461874 EIF4A1P60842 406 aaKnown RBP24.99■■□□□ 1.59
VARS-220ENST00000461874 PRR5LQ6MZQ0 368 aa24.99■■□□□ 1.59
VARS-220ENST00000461874 CLEC4GQ6UXB4 293 aa24.99■■□□□ 1.59
VARS-220ENST00000461874 BRIP1Q9BX63 1249 aa24.99■■□□□ 1.59
VARS-220ENST00000461874 ARFGEF1Q9Y6D6 1849 aa24.98■■□□□ 1.59
VARS-220ENST00000461874 RIPK4P57078 832 aa24.98■■□□□ 1.59
VARS-220ENST00000461874 C9orf131Q5VYM1 1079 aa24.97■■□□□ 1.59
VARS-220ENST00000461874 TTLL6Q8N841 843 aa24.97■■□□□ 1.59
VARS-220ENST00000461874 RGL2O15211 777 aa24.96■■□□□ 1.59
VARS-220ENST00000461874 PDE6BP35913 854 aa24.96■■□□□ 1.59
VARS-220ENST00000461874 TMPOP42166 694 aaKnown RBP24.96■■□□□ 1.59
VARS-220ENST00000461874 CCDC24Q8N4L8 307 aa24.96■■□□□ 1.59
VARS-220ENST00000461874 PDZRN3Q9UPQ7 1066 aa24.96■■□□□ 1.59
VARS-220ENST00000461874 ZNF652Q9Y2D9 606 aa24.96■■□□□ 1.59
VARS-220ENST00000461874 CNBD1Q8NA66 436 aa24.95■■□□□ 1.58
VARS-220ENST00000461874 PRKRIP1Q9H875 184 aaPredicted RBP24.94■■□□□ 1.58
VARS-220ENST00000461874 KDM3BQ7LBC6 1761 aa24.94■■□□□ 1.58
VARS-220ENST00000461874 SENP3-EIF4A1A0A087X0R7 540 aa24.93■■□□□ 1.58
VARS-220ENST00000461874 LMOD3Q0VAK6 560 aa24.93■■□□□ 1.58
VARS-220ENST00000461874 NPHP1O15259 732 aa24.92■■□□□ 1.58
VARS-220ENST00000461874 WDR43Q15061 677 aaKnown RBP eCLIP24.92■■□□□ 1.58
VARS-220ENST00000461874 CCDC146Q8IYE0 955 aa24.92■■□□□ 1.58
VARS-220ENST00000461874 TSPYL4Q9UJ04 414 aa24.92■■□□□ 1.58
VARS-220ENST00000461874 BCORQ6W2J9 1755 aa24.92■■□□□ 1.58
VARS-220ENST00000461874 KIF3CO14782 793 aa24.91■■□□□ 1.58
VARS-220ENST00000461874 ST5P78524 1137 aa24.91■■□□□ 1.58
VARS-220ENST00000461874 NBPF5PQ86XG9 351 aaPredicted RBP24.91■■□□□ 1.58
VARS-220ENST00000461874 ZNF622Q969S3 477 aaKnown RBP eCLIP24.91■■□□□ 1.58
VARS-220ENST00000461874 BABAM1Q9NWV8 329 aa24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms