RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ANAPC15P60006 121 aa14□□□□□ -0.17
CPSF3-202ENST00000460593 KIF24Q5T7B8 1368 aa14□□□□□ -0.17
CPSF3-202ENST00000460593 GNAI2P04899 355 aa14□□□□□ -0.17
CPSF3-202ENST00000460593 CASTP20810 708 aaKnown RBP14□□□□□ -0.17
CPSF3-202ENST00000460593 CWC27Q6UX04 472 aaKnown RBP14□□□□□ -0.17
CPSF3-202ENST00000460593 ZFYVE9O95405 1425 aa14□□□□□ -0.17
CPSF3-202ENST00000460593 USP27XA6NNY8 438 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 LRRFIP2Q9Y608 721 aaKnown RBP13.99□□□□□ -0.17
CPSF3-202ENST00000460593 MRVI1Q9Y6F6 885 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 A0A087WWV3 80 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 SLFN14P0C7P3 912 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 KCNJ4P48050 445 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 TRIM5Q9C035 493 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 TFIP11Q9UBB9 837 aaKnown RBP13.99□□□□□ -0.17
CPSF3-202ENST00000460593 MTMR6Q9Y217 621 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 CHD1O14646 1710 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 CHL1O00533 1208 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 CCDC192P0DO97 292 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 ADCK5Q3MIX3 580 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 ANO6Q4KMQ2 910 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 TTC6Q86TZ1 520 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 TCEANC2Q96MN5 208 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 MAP2P11137 1827 aaKnown RBP13.99□□□□□ -0.17
CPSF3-202ENST00000460593 DLG5Q8TDM6 1919 aa13.99□□□□□ -0.17
CPSF3-202ENST00000460593 TYRO3Q06418 890 aa13.98□□□□□ -0.17
CPSF3-202ENST00000460593 TPD52L1Q16890 204 aaPredicted RBP13.98□□□□□ -0.17
CPSF3-202ENST00000460593 CCDC144BQ3MJ40 725 aa13.98□□□□□ -0.17
CPSF3-202ENST00000460593 CCDC144CPQ8IYA2 1237 aa13.98□□□□□ -0.17
CPSF3-202ENST00000460593 RTF1Q92541 710 aaKnown RBP13.98□□□□□ -0.17
CPSF3-202ENST00000460593 SYTL4Q96C24 671 aaPredicted RBP13.98□□□□□ -0.17
CPSF3-202ENST00000460593 GOLGA6L6A8MZA4 724 aa13.98□□□□□ -0.17
CPSF3-202ENST00000460593 PLCD3Q8N3E9 789 aa13.98□□□□□ -0.17
CPSF3-202ENST00000460593 TTC14Q96N46 770 aa13.98□□□□□ -0.17
CPSF3-202ENST00000460593 CBX8Q9HC52 389 aa13.98□□□□□ -0.17
CPSF3-202ENST00000460593 PTPRMP28827 1452 aa13.98□□□□□ -0.17
CPSF3-202ENST00000460593 CACTINQ8WUQ7 758 aaKnown RBP13.97□□□□□ -0.17
CPSF3-202ENST00000460593 LIMCH1Q9UPQ0 1083 aa13.97□□□□□ -0.17
CPSF3-202ENST00000460593 ZSCAN25Q6NSZ9 544 aa13.97□□□□□ -0.17
CPSF3-202ENST00000460593 CCDC112Q8NEF3 446 aa13.97□□□□□ -0.17
CPSF3-202ENST00000460593 KIAA0232Q92628 1395 aa13.97□□□□□ -0.17
CPSF3-202ENST00000460593 ST3GAL1Q11201 340 aa13.97□□□□□ -0.17
CPSF3-202ENST00000460593 FAM200AQ8TCP9 573 aa13.97□□□□□ -0.17
CPSF3-202ENST00000460593 FEZ1Q99689 392 aa13.97□□□□□ -0.17
CPSF3-202ENST00000460593 TRMT1Q9NXH9 659 aaKnown RBP13.97□□□□□ -0.17
CPSF3-202ENST00000460593 DDX41Q9UJV9 622 aaKnown RBP13.97□□□□□ -0.17
CPSF3-202ENST00000460593 DACT1Q9NYF0 836 aa13.96□□□□□ -0.17
CPSF3-202ENST00000460593 PTPRCP08575 1304 aa13.96□□□□□ -0.17
CPSF3-202ENST00000460593 KMT5BQ4FZB7 885 aa13.96□□□□□ -0.17
CPSF3-202ENST00000460593 CDC37L1Q7L3B6 337 aa13.96□□□□□ -0.17
CPSF3-202ENST00000460593 NEXMIFQ5QGS0 1516 aa13.96□□□□□ -0.18
CPSF3-202ENST00000460593 SMTNL1A8MU46 457 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 PDE4CQ08493 712 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 KIF18AQ8NI77 898 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 NUP62CLQ9H1M0 184 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 DNAJC25Q9H1X3 360 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 TSPYL4Q9UJ04 414 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 ZNF215Q9UL58 517 aaPredicted RBP13.95□□□□□ -0.18
CPSF3-202ENST00000460593 NUTM2FA1L443 756 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 EIF4A2Q14240 407 aaKnown RBP13.95□□□□□ -0.18
CPSF3-202ENST00000460593 MAP3K11Q16584 847 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 JAKMIP1Q96N16 626 aaKnown RBP13.95□□□□□ -0.18
CPSF3-202ENST00000460593 CDC42BPGQ6DT37 1551 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 POGZQ7Z3K3 1410 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 PTH1RQ03431 593 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 PRPF40BQ6NWY9 871 aaKnown RBP13.95□□□□□ -0.18
CPSF3-202ENST00000460593 FBXW7Q969H0 707 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 COG3Q96JB2 828 aa13.95□□□□□ -0.18
CPSF3-202ENST00000460593 LSG1Q9H089 658 aaKnown RBP13.95□□□□□ -0.18
CPSF3-202ENST00000460593 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.95□□□□□ -0.18
CPSF3-202ENST00000460593 KIDINS220Q9ULH0 1771 aa13.94□□□□□ -0.18
CPSF3-202ENST00000460593 ANKRD26Q9UPS8 1709 aa13.94□□□□□ -0.18
CPSF3-202ENST00000460593 SGSM2O43147 1006 aa13.94□□□□□ -0.18
CPSF3-202ENST00000460593 SURF6O75683 361 aaKnown RBP13.94□□□□□ -0.18
CPSF3-202ENST00000460593 IRX5P78411 483 aaPredicted RBP13.94□□□□□ -0.18
CPSF3-202ENST00000460593 ELF2Q15723 593 aa13.94□□□□□ -0.18
CPSF3-202ENST00000460593 HYPKQ9NX55 129 aa13.94□□□□□ -0.18
CPSF3-202ENST00000460593 NAP1L2Q9ULW6 460 aaPredicted RBP13.94□□□□□ -0.18
CPSF3-202ENST00000460593 RAD50Q92878 1312 aa13.94□□□□□ -0.18
CPSF3-202ENST00000460593 CCT4P50991 539 aaKnown RBP13.93□□□□□ -0.18
CPSF3-202ENST00000460593 ZNF75DP51815 510 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 ATP8B2P98198 1209 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 ME3Q16798 604 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 TNMDQ9H2S6 317 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 CLIP2Q9UDT6 1046 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 TERF2Q15554 542 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 HSP90AB2PQ58FF8 381 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 FBXO31Q5XUX0 539 aaPredicted RBP13.93□□□□□ -0.18
CPSF3-202ENST00000460593 RAPGEF3O95398 923 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 CEP135Q66GS9 1140 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 PDRG1Q9NUG6 133 aa13.93□□□□□ -0.18
CPSF3-202ENST00000460593 TPM3P06753 285 aa13.92□□□□□ -0.18
CPSF3-202ENST00000460593 ATP6V1DQ9Y5K8 247 aa13.92□□□□□ -0.18
CPSF3-202ENST00000460593 STK3Q13188 491 aa13.92□□□□□ -0.18
CPSF3-202ENST00000460593 LARP1BQ659C4 914 aaKnown RBP13.92□□□□□ -0.18
CPSF3-202ENST00000460593 FBXO38Q6PIJ6 1188 aa13.92□□□□□ -0.18
CPSF3-202ENST00000460593 SIGLEC1Q9BZZ2 1709 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 FLIIQ13045 1269 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 PI4K2BQ8TCG2 481 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 STAP2Q9UGK3 403 aa13.91□□□□□ -0.18
CPSF3-202ENST00000460593 LMTK2Q8IWU2 1503 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms