RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 ABCC4O15439 1325 aa14.47□□□□□ -0.09
SYNE2-207ENST00000458046 CDC42BPGQ6DT37 1551 aa14.47□□□□□ -0.09
SYNE2-207ENST00000458046 MAP2P11137 1827 aaKnown RBP14.47□□□□□ -0.09
SYNE2-207ENST00000458046 NUTM2FA1L443 756 aa14.47□□□□□ -0.09
SYNE2-207ENST00000458046 DCAF8L1A6NGE4 600 aa14.47□□□□□ -0.09
SYNE2-207ENST00000458046 XRCC6P12956 609 aaKnown RBP eCLIP14.47□□□□□ -0.09
SYNE2-207ENST00000458046 KIF2CQ99661 725 aa14.47□□□□□ -0.09
SYNE2-207ENST00000458046 CPSF1Q10570 1443 aaKnown RBP14.47□□□□□ -0.09
SYNE2-207ENST00000458046 EDC4Q6P2E9 1401 aaKnown RBP14.47□□□□□ -0.09
SYNE2-207ENST00000458046 LRP6O75581 1613 aa14.46□□□□□ -0.09
SYNE2-207ENST00000458046 CD2BP2O95400 341 aaKnown RBP14.46□□□□□ -0.09
SYNE2-207ENST00000458046 KCNA1Q09470 495 aa14.46□□□□□ -0.09
SYNE2-207ENST00000458046 FAM43AQ8N2R8 423 aa14.46□□□□□ -0.09
SYNE2-207ENST00000458046 PTCH1Q13635 1447 aa14.46□□□□□ -0.1
SYNE2-207ENST00000458046 LMOD3Q0VAK6 560 aa14.46□□□□□ -0.1
SYNE2-207ENST00000458046 SNX21Q969T3 373 aa14.46□□□□□ -0.1
SYNE2-207ENST00000458046 API5Q9BZZ5 524 aaKnown RBP14.46□□□□□ -0.1
SYNE2-207ENST00000458046 PIK3R4Q99570 1358 aa14.45□□□□□ -0.1
SYNE2-207ENST00000458046 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.45□□□□□ -0.1
SYNE2-207ENST00000458046 HSP90AA1P07900 732 aaKnown RBP14.45□□□□□ -0.1
SYNE2-207ENST00000458046 SULT6B1Q6IMI4 303 aa14.45□□□□□ -0.1
SYNE2-207ENST00000458046 PANK2Q9BZ23 570 aa14.45□□□□□ -0.1
SYNE2-207ENST00000458046 SOX12O15370 315 aa14.44□□□□□ -0.1
SYNE2-207ENST00000458046 C16orf71Q8IYS4 520 aaPredicted RBP14.44□□□□□ -0.1
SYNE2-207ENST00000458046 DDIT3P35638 169 aa14.44□□□□□ -0.1
SYNE2-207ENST00000458046 TNPO1Q92973 898 aaKnown RBP14.44□□□□□ -0.1
SYNE2-207ENST00000458046 BCL9LQ86UU0 1499 aa14.43□□□□□ -0.1
SYNE2-207ENST00000458046 MCM10Q7L590 875 aa14.43□□□□□ -0.1
SYNE2-207ENST00000458046 MTA3Q9BTC8 594 aa14.43□□□□□ -0.1
SYNE2-207ENST00000458046 AATKQ6ZMQ8 1374 aa14.43□□□□□ -0.1
SYNE2-207ENST00000458046 DLC1Q96QB1 1528 aa14.43□□□□□ -0.1
SYNE2-207ENST00000458046 FSD2A1L4K1 749 aa14.43□□□□□ -0.1
SYNE2-207ENST00000458046 RINLQ6ZS11 566 aa14.43□□□□□ -0.1
SYNE2-207ENST00000458046 GSPT1P15170 499 aaKnown RBP14.42□□□□□ -0.1
SYNE2-207ENST00000458046 EIF4A2Q14240 407 aaKnown RBP14.42□□□□□ -0.1
SYNE2-207ENST00000458046 PNMA2Q9UL42 364 aa14.42□□□□□ -0.1
SYNE2-207ENST00000458046 PAX3P23760 479 aa14.42□□□□□ -0.1
SYNE2-207ENST00000458046 GTF2E1P29083 439 aaPredicted RBP14.42□□□□□ -0.1
SYNE2-207ENST00000458046 PRR36Q9H6K5 1346 aa14.42□□□□□ -0.1
SYNE2-207ENST00000458046 PARNO95453 639 aaKnown RBP14.41□□□□□ -0.1
SYNE2-207ENST00000458046 PLEKHM2Q8IWE5 1019 aa14.41□□□□□ -0.1
SYNE2-207ENST00000458046 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.41□□□□□ -0.1
SYNE2-207ENST00000458046 RRAGDQ9NQL2 400 aaPredicted RBP14.41□□□□□ -0.1
SYNE2-207ENST00000458046 DDX11L8A8MPP1 907 aa14.41□□□□□ -0.1
SYNE2-207ENST00000458046 CDC45O75419 566 aa14.41□□□□□ -0.1
SYNE2-207ENST00000458046 PHF14O94880 888 aa14.41□□□□□ -0.1
SYNE2-207ENST00000458046 NCOA3Q9Y6Q9 1424 aa14.41□□□□□ -0.1
SYNE2-207ENST00000458046 DCTPP1Q9H773 170 aa14.4□□□□□ -0.1
SYNE2-207ENST00000458046 MIS18AQ9NYP9 233 aa14.4□□□□□ -0.1
SYNE2-207ENST00000458046 AHDC1Q5TGY3 1603 aaPredicted RBP14.4□□□□□ -0.1
SYNE2-207ENST00000458046 TCF3P15923 654 aa14.4□□□□□ -0.1
SYNE2-207ENST00000458046 HSP90AB2PQ58FF8 381 aa14.4□□□□□ -0.1
SYNE2-207ENST00000458046 OTUD7AQ8TE49 926 aaPredicted RBP14.4□□□□□ -0.1
SYNE2-207ENST00000458046 NGLY1Q96IV0 654 aa14.4□□□□□ -0.1
SYNE2-207ENST00000458046 K7ELQ4 463 aaPredicted RBP14.39□□□□□ -0.11
SYNE2-207ENST00000458046 MCCD1P59942 119 aaPredicted RBP14.39□□□□□ -0.11
SYNE2-207ENST00000458046 MEX3CQ5U5Q3 659 aaKnown RBP14.38□□□□□ -0.11
SYNE2-207ENST00000458046 INTS3Q68E01 1043 aaKnown RBP14.38□□□□□ -0.11
SYNE2-207ENST00000458046 GAS2L2Q8NHY3 880 aa14.38□□□□□ -0.11
SYNE2-207ENST00000458046 RBM46Q8TBY0 533 aaKnown RBP14.38□□□□□ -0.11
SYNE2-207ENST00000458046 RAB3GAP1Q15042 981 aa14.38□□□□□ -0.11
SYNE2-207ENST00000458046 ANKLE2Q86XL3 938 aa14.38□□□□□ -0.11
SYNE2-207ENST00000458046 CHL1O00533 1208 aa14.38□□□□□ -0.11
SYNE2-207ENST00000458046 MORC4Q8TE76 937 aa14.38□□□□□ -0.11
SYNE2-207ENST00000458046 TTC21BQ7Z4L5 1316 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 MYBPC2Q14324 1141 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 PMM1Q92871 262 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 GBP4Q96PP9 640 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 ACEP12821 1306 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 ARHGAP23Q9P227 1491 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 PRELPP51888 382 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 LONRF3Q496Y0 759 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 TTC22Q5TAA0 569 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 MAMSTRQ6ZN01 415 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 ANKRD44Q8N8A2 993 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 MEIS3Q99687 375 aa14.37□□□□□ -0.11
SYNE2-207ENST00000458046 FOXO3O43524 673 aa14.36□□□□□ -0.11
SYNE2-207ENST00000458046 SSFA2P28290 1259 aa14.36□□□□□ -0.11
SYNE2-207ENST00000458046 MRE11P49959 708 aa14.36□□□□□ -0.11
SYNE2-207ENST00000458046 HDGFP51858 240 aaKnown RBP14.36□□□□□ -0.11
SYNE2-207ENST00000458046 CEP85Q6P2H3 762 aa14.36□□□□□ -0.11
SYNE2-207ENST00000458046 TSHZ1Q6ZSZ6 1077 aa14.36□□□□□ -0.11
SYNE2-207ENST00000458046 KRBA2Q6ZNG9 492 aa14.35□□□□□ -0.11
SYNE2-207ENST00000458046 GRPEL1Q9HAV7 217 aa14.35□□□□□ -0.11
SYNE2-207ENST00000458046 ROBO2Q9HCK4 1378 aa14.35□□□□□ -0.11
SYNE2-207ENST00000458046 CREB3O43889 395 aa14.35□□□□□ -0.11
SYNE2-207ENST00000458046 SLC4A10Q6U841 1118 aa14.35□□□□□ -0.11
SYNE2-207ENST00000458046 RPAP2Q8IXW5 612 aaPredicted RBP14.35□□□□□ -0.11
SYNE2-207ENST00000458046 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.35□□□□□ -0.11
SYNE2-207ENST00000458046 DLG5Q8TDM6 1919 aa14.35□□□□□ -0.11
SYNE2-207ENST00000458046 NRXN3Q9Y4C0 1643 aa14.34□□□□□ -0.11
SYNE2-207ENST00000458046 UBXN4Q92575 508 aa14.34□□□□□ -0.11
SYNE2-207ENST00000458046 MSH6P52701 1360 aa14.33□□□□□ -0.11
SYNE2-207ENST00000458046 F6X3S4 739 aa14.33□□□□□ -0.12
SYNE2-207ENST00000458046 SDSP20132 328 aa14.33□□□□□ -0.12
SYNE2-207ENST00000458046 ZFYVE27Q5T4F4 411 aa14.33□□□□□ -0.12
SYNE2-207ENST00000458046 GAS2L3Q86XJ1 694 aa14.33□□□□□ -0.12
SYNE2-207ENST00000458046 KIF24Q5T7B8 1368 aa14.33□□□□□ -0.12
SYNE2-207ENST00000458046 NUTM2BA6NNL0 878 aaPredicted RBP14.33□□□□□ -0.12
SYNE2-207ENST00000458046 NUTM2EB1AL46 878 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms