RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 RAB11FIP3O75154 756 aa20.52■□□□□ 0.87
CCDC43-202ENST00000457422 NLRP2Q9NX02 1062 aa20.52■□□□□ 0.87
CCDC43-202ENST00000457422 MCM4P33991 863 aa20.51■□□□□ 0.87
CCDC43-202ENST00000457422 PPP1R42Q7Z4L9 355 aa20.5■□□□□ 0.87
CCDC43-202ENST00000457422 RAPGEF4Q8WZA2 1011 aa20.5■□□□□ 0.87
CCDC43-202ENST00000457422 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.5■□□□□ 0.878e-6■■■□□ 14.7
CCDC43-202ENST00000457422 ERC2O15083 957 aa20.5■□□□□ 0.87
CCDC43-202ENST00000457422 PROSER3Q2NL68 480 aa20.5■□□□□ 0.87
CCDC43-202ENST00000457422 XIRP1Q702N8 1843 aaKnown RBP20.49■□□□□ 0.87
CCDC43-202ENST00000457422 MEGF6O75095 1541 aa20.49■□□□□ 0.87
CCDC43-202ENST00000457422 PRAMEF22A3QJZ6 481 aa20.49■□□□□ 0.87
CCDC43-202ENST00000457422 NBPF7P0C2Y1 421 aaPredicted RBP20.49■□□□□ 0.87
CCDC43-202ENST00000457422 CABLES1Q8TDN4 633 aa20.49■□□□□ 0.87
CCDC43-202ENST00000457422 KDM6AO15550 1401 aaPredicted RBP20.49■□□□□ 0.87
CCDC43-202ENST00000457422 PKD1L3Q7Z443 1732 aa20.49■□□□□ 0.87
CCDC43-202ENST00000457422 ALDH1L1O75891 902 aa20.48■□□□□ 0.87
CCDC43-202ENST00000457422 HSPA2P54652 639 aa20.48■□□□□ 0.87
CCDC43-202ENST00000457422 MRC1P22897 1456 aa20.48■□□□□ 0.87
CCDC43-202ENST00000457422 TATP17735 454 aaPredicted RBP20.47■□□□□ 0.87
CCDC43-202ENST00000457422 KSR2Q6VAB6 950 aa20.47■□□□□ 0.87
CCDC43-202ENST00000457422 HYPKQ9NX55 129 aa20.47■□□□□ 0.87
CCDC43-202ENST00000457422 MTX1Q13505 466 aa20.47■□□□□ 0.87
CCDC43-202ENST00000457422 C5P01031 1676 aa20.47■□□□□ 0.87
CCDC43-202ENST00000457422 CPDO75976 1380 aa20.47■□□□□ 0.87
CCDC43-202ENST00000457422 SPG7Q9UQ90 795 aa20.46■□□□□ 0.87
CCDC43-202ENST00000457422 MAP3K2Q9Y2U5 619 aa20.46■□□□□ 0.87
CCDC43-202ENST00000457422 SPATA31A3Q5VYP0 1347 aa20.46■□□□□ 0.87
CCDC43-202ENST00000457422 SRGAP3O43295 1099 aa20.46■□□□□ 0.87
CCDC43-202ENST00000457422 CSB-PGBD3P0DP91 1061 aa20.46■□□□□ 0.87
CCDC43-202ENST00000457422 PHKG2P15735 406 aa20.46■□□□□ 0.87
CCDC43-202ENST00000457422 CHRNA2Q15822 529 aa20.46■□□□□ 0.87
CCDC43-202ENST00000457422 SLC52A2Q9HAB3 445 aa20.46■□□□□ 0.87
CCDC43-202ENST00000457422 SURF6O75683 361 aaKnown RBP20.45■□□□□ 0.86
CCDC43-202ENST00000457422 RAB3GAP1Q15042 981 aa20.45■□□□□ 0.86
CCDC43-202ENST00000457422 IL1RAPL2Q9NP60 686 aa20.45■□□□□ 0.86
CCDC43-202ENST00000457422 ZNF790Q6PG37 636 aa20.44■□□□□ 0.86
CCDC43-202ENST00000457422 RHPN1Q8TCX5 695 aa20.44■□□□□ 0.86
CCDC43-202ENST00000457422 KIF1BPQ96EK5 621 aa20.44■□□□□ 0.86
CCDC43-202ENST00000457422 DDX21Q9NR30 783 aaKnown RBP eCLIP20.44■□□□□ 0.86
CCDC43-202ENST00000457422 AK9Q5TCS8 1911 aa20.44■□□□□ 0.86
CCDC43-202ENST00000457422 HSP90AA1P07900 732 aaKnown RBP20.44■□□□□ 0.86
CCDC43-202ENST00000457422 HSP90AB4PQ58FF6 505 aa20.44■□□□□ 0.86
CCDC43-202ENST00000457422 ESYT1Q9BSJ8 1104 aa20.44■□□□□ 0.86
CCDC43-202ENST00000457422 HDAC5Q9UQL6 1122 aa20.44■□□□□ 0.86
CCDC43-202ENST00000457422 DDX11L8A8MPP1 907 aa20.43■□□□□ 0.86
CCDC43-202ENST00000457422 SLC39A6Q13433 755 aa20.43■□□□□ 0.86
CCDC43-202ENST00000457422 FOXD4L1Q9NU39 408 aa20.43■□□□□ 0.86
CCDC43-202ENST00000457422 PARP4Q9UKK3 1724 aaKnown RBP20.43■□□□□ 0.86
CCDC43-202ENST00000457422 IFNL2Q8IZJ0 200 aa20.42■□□□□ 0.86
CCDC43-202ENST00000457422 CHMLP26374 656 aa20.42■□□□□ 0.86
CCDC43-202ENST00000457422 PDIA6Q15084 440 aa20.42■□□□□ 0.86
CCDC43-202ENST00000457422 TRIM6-TRIM34B2RNG4 842 aa20.41■□□□□ 0.86
CCDC43-202ENST00000457422 DDX58O95786 925 aaKnown RBP20.41■□□□□ 0.86
CCDC43-202ENST00000457422 NUTM1Q86Y26 1132 aa20.41■□□□□ 0.86
CCDC43-202ENST00000457422 UTYO14607 1347 aa20.41■□□□□ 0.86
CCDC43-202ENST00000457422 EPB41L2O43491 1005 aaKnown RBP20.41■□□□□ 0.86
CCDC43-202ENST00000457422 LINS1Q8NG48 757 aa20.41■□□□□ 0.86
CCDC43-202ENST00000457422 TNPO1Q92973 898 aaKnown RBP20.41■□□□□ 0.86
CCDC43-202ENST00000457422 RILPL2Q969X0 211 aa20.41■□□□□ 0.86
CCDC43-202ENST00000457422 ST18O60284 1047 aa20.4■□□□□ 0.86
CCDC43-202ENST00000457422 USP42Q9H9J4 1324 aaKnown RBP20.4■□□□□ 0.86
CCDC43-202ENST00000457422 CWF19L2Q2TBE0 894 aaKnown RBP20.39■□□□□ 0.86
CCDC43-202ENST00000457422 UNC5CLQ8IV45 518 aa20.39■□□□□ 0.86
CCDC43-202ENST00000457422 NFATC2IPQ8NCF5 419 aa20.39■□□□□ 0.86
CCDC43-202ENST00000457422 PI4K2BQ8TCG2 481 aa20.39■□□□□ 0.86
CCDC43-202ENST00000457422 DCAF5Q96JK2 942 aa20.39■□□□□ 0.86
CCDC43-202ENST00000457422 C9orf78Q9NZ63 289 aaPredicted RBP20.39■□□□□ 0.86
CCDC43-202ENST00000457422 IL17RAQ96F46 866 aa20.39■□□□□ 0.85
CCDC43-202ENST00000457422 BRINP3Q76B58 766 aa20.38■□□□□ 0.85
CCDC43-202ENST00000457422 GBP4Q96PP9 640 aa20.38■□□□□ 0.85
CCDC43-202ENST00000457422 CYP27B1O15528 508 aa20.38■□□□□ 0.85
CCDC43-202ENST00000457422 AIMP1Q12904 312 aaKnown RBP20.38■□□□□ 0.85
CCDC43-202ENST00000457422 ANAPC15P60006 121 aa20.37■□□□□ 0.85
CCDC43-202ENST00000457422 GRM8O00222 908 aa20.36■□□□□ 0.85
CCDC43-202ENST00000457422 MCCP23508 829 aa20.36■□□□□ 0.85
CCDC43-202ENST00000457422 CLEC17AQ6ZS10 378 aa20.36■□□□□ 0.85
CCDC43-202ENST00000457422 LAMB4A4D0S4 1761 aa20.36■□□□□ 0.85
CCDC43-202ENST00000457422 TTC41PQ6P2S7 1318 aa20.36■□□□□ 0.85
CCDC43-202ENST00000457422 TRAK2O60296 914 aa20.36■□□□□ 0.85
CCDC43-202ENST00000457422 STRCQ7RTU9 1775 aa20.36■□□□□ 0.85
CCDC43-202ENST00000457422 GLI3P10071 1580 aa20.35■□□□□ 0.85
CCDC43-202ENST00000457422 PTMSP20962 102 aa20.35■□□□□ 0.85
CCDC43-202ENST00000457422 OS9Q13438 667 aaPredicted RBP20.35■□□□□ 0.85
CCDC43-202ENST00000457422 ZNF496Q96IT1 587 aaPredicted RBP20.35■□□□□ 0.85
CCDC43-202ENST00000457422 LARP1Q6PKG0 1096 aaKnown RBP20.34■□□□□ 0.85
CCDC43-202ENST00000457422 ERC1Q8IUD2 1116 aa20.34■□□□□ 0.85
CCDC43-202ENST00000457422 MYL6BP14649 208 aa20.34■□□□□ 0.85
CCDC43-202ENST00000457422 SUCLG2Q96I99 432 aa20.34■□□□□ 0.85
CCDC43-202ENST00000457422 MAP4K4O95819 1239 aaPredicted RBP20.33■□□□□ 0.85
CCDC43-202ENST00000457422 RIC3Q7Z5B4 369 aa20.33■□□□□ 0.85
CCDC43-202ENST00000457422 CWC22Q9HCG8 908 aaKnown RBP20.33■□□□□ 0.85
CCDC43-202ENST00000457422 IGKV5-2P06315 115 aa20.33■□□□□ 0.84
CCDC43-202ENST00000457422 SNRPA1P09661 255 aaKnown RBP20.33■□□□□ 0.84
CCDC43-202ENST00000457422 LRP10Q7Z4F1 713 aa20.33■□□□□ 0.84
CCDC43-202ENST00000457422 TTC5Q8N0Z6 440 aa20.33■□□□□ 0.84
CCDC43-202ENST00000457422 IL27Q8NEV9 243 aa20.33■□□□□ 0.84
CCDC43-202ENST00000457422 XAGE3Q8WTP9 111 aa20.33■□□□□ 0.84
CCDC43-202ENST00000457422 KAZALD1Q96I82 304 aa20.33■□□□□ 0.84
CCDC43-202ENST00000457422 ANO2Q9NQ90 1003 aa20.33■□□□□ 0.84
CCDC43-202ENST00000457422 MCM2P49736 904 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms