RNA–Protein interactions for RNA: ENST00000456369.5

CHEK2-221, Transcript of checkpoint kinase 2, human

TSL 3

Gene CHEK2, Length 588 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHEK2-221	ENST00000456369	PCDHB13	Q9Y5F0	798 aa		13.15	□□□□□ -0.3
CHEK2-221	ENST00000456369	SCN11A	Q9UI33	1791 aa		13.15	□□□□□ -0.31
CHEK2-221	ENST00000456369	DCTN1	Q14203	1278 aa		13.14	□□□□□ -0.31
CHEK2-221	ENST00000456369	LINC00116	Q8NCU8	138 aa		13.14	□□□□□ -0.31
CHEK2-221	ENST00000456369	PNISR	Q8TF01	805 aa	Known RBP	13.14	□□□□□ -0.31
CHEK2-221	ENST00000456369	MAPK8IP3	Q9UPT6	1336 aa		13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	PTCD1	O75127	700 aa	Known RBP	13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	NEFM	P07197	916 aa		13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	ATP6V1A	P38606	617 aa		13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	SLC39A6	Q13433	755 aa		13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	CCDC146	Q8IYE0	955 aa		13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	RTF1	Q92541	710 aa	Known RBP	13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	RUNDC1	Q96C34	613 aa		13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	PNPLA7	Q6ZV29	1317 aa		13.13	□□□□□ -0.31
CHEK2-221	ENST00000456369	HMGB2	P26583	209 aa	Known RBP	13.12	□□□□□ -0.31
CHEK2-221	ENST00000456369	TMPO	P42166	694 aa	Known RBP	13.12	□□□□□ -0.31
CHEK2-221	ENST00000456369	TEF	Q10587	303 aa		13.12	□□□□□ -0.31
CHEK2-221	ENST00000456369	AMIGO3	Q86WK7	504 aa		13.12	□□□□□ -0.31
CHEK2-221	ENST00000456369	KAT6B	Q8WYB5	2073 aa		13.12	□□□□□ -0.31
CHEK2-221	ENST00000456369	KCP	Q6ZWJ8	1503 aa		13.12	□□□□□ -0.31
CHEK2-221	ENST00000456369	ZNF790	Q6PG37	636 aa		13.11	□□□□□ -0.31
CHEK2-221	ENST00000456369	MS4A3	Q96HJ5	214 aa		13.11	□□□□□ -0.31
CHEK2-221	ENST00000456369	SGIP1	Q9BQI5	828 aa		13.11	□□□□□ -0.31
CHEK2-221	ENST00000456369	TFCP2L1	Q9NZI6	479 aa		13.11	□□□□□ -0.31
CHEK2-221	ENST00000456369	ZNF831	Q5JPB2	1677 aa		13.11	□□□□□ -0.31
CHEK2-221	ENST00000456369	GALR2	O43603	387 aa	Predicted RBP	13.1	□□□□□ -0.31
CHEK2-221	ENST00000456369	RIPK4	P57078	832 aa		13.1	□□□□□ -0.31
CHEK2-221	ENST00000456369	THUMPD2	Q9BTF0	503 aa	Known RBP	13.1	□□□□□ -0.31
CHEK2-221	ENST00000456369	MRS2	Q9HD23	443 aa		13.1	□□□□□ -0.31
CHEK2-221	ENST00000456369	CASZ1	Q86V15	1759 aa		13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	C5	P01031	1676 aa		13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	BTBD11	A6QL63	1104 aa		13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	KCNQ3	O43525	872 aa		13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	C4B	P0C0L5	1744 aa		13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	TAF7	Q15545	349 aa	Predicted RBP	13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	RC3H1	Q5TC82	1133 aa	Known RBP	13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	COL23A1	Q86Y22	540 aa	Predicted RBP	13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	VSIG10	Q8N0Z9	540 aa		13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	ZNF496	Q96IT1	587 aa	Predicted RBP	13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	TRIM35	Q9UPQ4	493 aa		13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	CNTNAP4	Q9C0A0	1308 aa		13.09	□□□□□ -0.31
CHEK2-221	ENST00000456369	SMIM5	Q71RC9	77 aa		13.08	□□□□□ -0.32
CHEK2-221	ENST00000456369	IFNL1	Q8IU54	200 aa		13.08	□□□□□ -0.32
CHEK2-221	ENST00000456369	AK7	Q96M32	723 aa		13.08	□□□□□ -0.32
CHEK2-221	ENST00000456369	PCDHB8	Q9UN66	801 aa		13.08	□□□□□ -0.32
CHEK2-221	ENST00000456369	RRP7A	Q9Y3A4	280 aa	Known RBP	13.08	□□□□□ -0.32
CHEK2-221	ENST00000456369	CIC	Q96RK0	1608 aa	Predicted RBP	13.08	□□□□□ -0.32
CHEK2-221	ENST00000456369	SIPA1L3	O60292	1781 aa	Predicted RBP	13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	ZBTB7A	O95365	584 aa		13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	CYP19A1	P11511	503 aa	Predicted RBP	13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	PTGER2	P43116	358 aa		13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	INTS5	Q6P9B9	1019 aa	Known RBP	13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	DNAJC10	Q8IXB1	793 aa		13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	TTC5	Q8N0Z6	440 aa		13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	MTFR1L	Q9H019	292 aa		13.07	□□□□□ -0.32
CHEK2-221	ENST00000456369	TAF1L	Q8IZX4	1826 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	APAF1	O14727	1248 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	GNPAT	O15228	680 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	SSFA2	P28290	1259 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	CRKL	P46109	303 aa	Known RBP	13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	LMOD3	Q0VAK6	560 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	FLAD1	Q8NFF5	587 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	SLC16A10	Q8TF71	515 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	SPON1	Q9HCB6	807 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	MIS18A	Q9NYP9	233 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	LRP5	O75197	1615 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	HEG1	Q9ULI3	1381 aa		13.06	□□□□□ -0.32
CHEK2-221	ENST00000456369	UBR2	Q8IWV8	1755 aa		13.05	□□□□□ -0.32
CHEK2-221	ENST00000456369	RPS6KA4	O75676	772 aa		13.05	□□□□□ -0.32
CHEK2-221	ENST00000456369	NEUROD2	Q15784	382 aa		13.05	□□□□□ -0.32
CHEK2-221	ENST00000456369	FMNL2	Q96PY5	1086 aa		13.05	□□□□□ -0.32
CHEK2-221	ENST00000456369	TJP1	Q07157	1748 aa		13.05	□□□□□ -0.32
CHEK2-221	ENST00000456369	QSER1	Q2KHR3	1735 aa		13.05	□□□□□ -0.32
CHEK2-221	ENST00000456369	COL5A3	P25940	1745 aa	Predicted RBP	13.04	□□□□□ -0.32
CHEK2-221	ENST00000456369	RGL2	O15211	777 aa		13.03	□□□□□ -0.32
CHEK2-221	ENST00000456369	PHF14	O94880	888 aa		13.03	□□□□□ -0.32
CHEK2-221	ENST00000456369	CCDC87	Q9NVE4	849 aa		13.03	□□□□□ -0.32
CHEK2-221	ENST00000456369	BABAM1	Q9NWV8	329 aa		13.03	□□□□□ -0.32
CHEK2-221	ENST00000456369	RTCB	Q9Y3I0	505 aa	Known RBP	13.03	□□□□□ -0.32
CHEK2-221	ENST00000456369	VIRMA	Q69YN4	1812 aa	Known RBP	13.03	□□□□□ -0.32
CHEK2-221	ENST00000456369	TUBGCP6	Q96RT7	1819 aa		13.03	□□□□□ -0.32
CHEK2-221	ENST00000456369	PRAMEF22	A3QJZ6	481 aa		13.02	□□□□□ -0.33
CHEK2-221	ENST00000456369	CHL1	O00533	1208 aa		13.02	□□□□□ -0.33
CHEK2-221	ENST00000456369	STARD3NL	O95772	234 aa		13.02	□□□□□ -0.33
CHEK2-221	ENST00000456369	EIF4A1	P60842	406 aa	Known RBP	13.02	□□□□□ -0.33
CHEK2-221	ENST00000456369	TRAPPC3L	Q5T215	181 aa		13.02	□□□□□ -0.33
CHEK2-221	ENST00000456369	ARHGEF1	Q92888	912 aa	Known RBP	13.02	□□□□□ -0.33
CHEK2-221	ENST00000456369	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.02	□□□□□ -0.33
CHEK2-221	ENST00000456369	USP16	Q9Y5T5	823 aa		13.02	□□□□□ -0.33
CHEK2-221	ENST00000456369	DLG5	Q8TDM6	1919 aa		13.01	□□□□□ -0.33
CHEK2-221	ENST00000456369	RIOK3	O14730	519 aa	Known RBP	13.01	□□□□□ -0.33
CHEK2-221	ENST00000456369	SNRPA1	P09661	255 aa	Known RBP	13.01	□□□□□ -0.33
CHEK2-221	ENST00000456369	ZBTB1	Q9Y2K1	713 aa		13.01	□□□□□ -0.33
CHEK2-221	ENST00000456369	SOS1	Q07889	1333 aa	Predicted RBP	13.01	□□□□□ -0.33
CHEK2-221	ENST00000456369	UBR3	Q6ZT12	1888 aa		13.01	□□□□□ -0.33
CHEK2-221	ENST00000456369	GIGYF1	O75420	1035 aa	Predicted RBP	13	□□□□□ -0.33
CHEK2-221	ENST00000456369	ZNF853	P0CG23	659 aa		13	□□□□□ -0.33
CHEK2-221	ENST00000456369	CCDC27	Q2M243	656 aa		13	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms