RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 C10orf71Q711Q0 1435 aa21.9■■□□□ 1.1
NCKIPSD-208ENST00000454134 COL15A1P39059 1388 aa21.9■■□□□ 1.1
NCKIPSD-208ENST00000454134 KIF13BQ9NQT8 1826 aa21.9■■□□□ 1.1
NCKIPSD-208ENST00000454134 ZPR1O75312 459 aa21.9■■□□□ 1.1
NCKIPSD-208ENST00000454134 STARD3NLO95772 234 aa21.9■■□□□ 1.1
NCKIPSD-208ENST00000454134 DDR1Q08345 913 aa21.9■■□□□ 1.1
NCKIPSD-208ENST00000454134 PXDNLA1KZ92 1463 aa21.9■■□□□ 1.1
NCKIPSD-208ENST00000454134 A0A0G2JLW4 131 aa21.89■■□□□ 1.09
NCKIPSD-208ENST00000454134 FMNL2Q96PY5 1086 aa21.89■■□□□ 1.09
NCKIPSD-208ENST00000454134 N4BP2Q86UW6 1770 aaPredicted RBP21.89■■□□□ 1.09
NCKIPSD-208ENST00000454134 KIAA1551Q9HCM1 1747 aa21.88■■□□□ 1.09
NCKIPSD-208ENST00000454134 NARFQ9UHQ1 456 aa21.87■■□□□ 1.09
NCKIPSD-208ENST00000454134 TM4SF1P30408 202 aa21.86■■□□□ 1.09
NCKIPSD-208ENST00000454134 TGFB2P61812 414 aa21.86■■□□□ 1.09
NCKIPSD-208ENST00000454134 POLRMTO00411 1230 aaKnown RBP21.85■■□□□ 1.09
NCKIPSD-208ENST00000454134 NEFMP07197 916 aa21.85■■□□□ 1.09
NCKIPSD-208ENST00000454134 DPEP1P16444 411 aa21.85■■□□□ 1.09
NCKIPSD-208ENST00000454134 RALBP1Q15311 655 aa21.85■■□□□ 1.09
NCKIPSD-208ENST00000454134 PLEKHF1Q96S99 279 aa21.85■■□□□ 1.09
NCKIPSD-208ENST00000454134 TEX13AQ9BXU3 409 aaPredicted RBP21.85■■□□□ 1.09
NCKIPSD-208ENST00000454134 BCL2L12Q9HB09 334 aa21.85■■□□□ 1.09
NCKIPSD-208ENST00000454134 ZNF330Q9Y3S2 320 aaPredicted RBP21.85■■□□□ 1.09
NCKIPSD-208ENST00000454134 HTATSF1O43719 755 aaKnown RBP21.84■■□□□ 1.09
NCKIPSD-208ENST00000454134 A1BGP04217 495 aa21.84■■□□□ 1.09
NCKIPSD-208ENST00000454134 EIF5P55010 431 aaKnown RBP21.84■■□□□ 1.09
NCKIPSD-208ENST00000454134 PRAMEF22A3QJZ6 481 aa21.83■■□□□ 1.09
NCKIPSD-208ENST00000454134 NFIXQ14938 502 aa21.83■■□□□ 1.09
NCKIPSD-208ENST00000454134 BCS1LQ9Y276 419 aa21.82■■□□□ 1.08
NCKIPSD-208ENST00000454134 USP16Q9Y5T5 823 aa21.82■■□□□ 1.08
NCKIPSD-208ENST00000454134 DLG5Q8TDM6 1919 aa21.82■■□□□ 1.08
NCKIPSD-208ENST00000454134 MIS18AQ9NYP9 233 aa21.81■■□□□ 1.08
NCKIPSD-208ENST00000454134 KCNA3P22001 575 aa21.8■■□□□ 1.08
NCKIPSD-208ENST00000454134 PIP4K2AP48426 406 aaPredicted RBP21.8■■□□□ 1.08
NCKIPSD-208ENST00000454134 TAF7Q15545 349 aaPredicted RBP21.8■■□□□ 1.08
NCKIPSD-208ENST00000454134 NFE2L2Q16236 605 aa21.8■■□□□ 1.08
NCKIPSD-208ENST00000454134 THUMPD2Q9BTF0 503 aaKnown RBP21.8■■□□□ 1.08
NCKIPSD-208ENST00000454134 TBC1D2BQ9UPU7 963 aa21.8■■□□□ 1.08
NCKIPSD-208ENST00000454134 A0A087WZG4 1122 aa21.79■■□□□ 1.08
NCKIPSD-208ENST00000454134 IL6STP40189 918 aaPredicted RBP21.79■■□□□ 1.08
NCKIPSD-208ENST00000454134 BICDL1Q6ZP65 573 aa21.79■■□□□ 1.08
NCKIPSD-208ENST00000454134 MAPK8IP3Q9UPT6 1336 aa21.79■■□□□ 1.08
NCKIPSD-208ENST00000454134 SNRPA1P09661 255 aaKnown RBP21.78■■□□□ 1.08
NCKIPSD-208ENST00000454134 CHRNA5P30532 468 aa21.78■■□□□ 1.08
NCKIPSD-208ENST00000454134 AFDNP55196 1824 aaKnown RBP21.78■■□□□ 1.08
NCKIPSD-208ENST00000454134 MYBBP1AQ9BQG0 1328 aaKnown RBP21.78■■□□□ 1.08
NCKIPSD-208ENST00000454134 SERPINB2P05120 415 aa21.77■■□□□ 1.08
NCKIPSD-208ENST00000454134 PNNQ9H307 717 aaKnown RBP21.77■■□□□ 1.08
NCKIPSD-208ENST00000454134 BRCA1P38398 1863 aaKnown RBP21.77■■□□□ 1.08
NCKIPSD-208ENST00000454134 TBC1D9BQ66K14 1250 aa21.76■■□□□ 1.07
NCKIPSD-208ENST00000454134 ATP10DQ9P241 1426 aa21.76■■□□□ 1.07
NCKIPSD-208ENST00000454134 NPM2Q86SE8 214 aaKnown RBP21.75■■□□□ 1.07
NCKIPSD-208ENST00000454134 PIM2Q9P1W9 311 aa21.75■■□□□ 1.07
NCKIPSD-208ENST00000454134 SCN7AQ01118 1682 aa21.75■■□□□ 1.07
NCKIPSD-208ENST00000454134 NRXN2Q9P2S2 1712 aa21.75■■□□□ 1.07
NCKIPSD-208ENST00000454134 ARHGAP27Q6ZUM4 889 aa21.74■■□□□ 1.07
NCKIPSD-208ENST00000454134 CAMTA2O94983 1202 aa21.73■■□□□ 1.07
NCKIPSD-208ENST00000454134 DZIP3Q86Y13 1208 aaKnown RBP21.73■■□□□ 1.07
NCKIPSD-208ENST00000454134 ADCY9O60503 1353 aa21.73■■□□□ 1.07
NCKIPSD-208ENST00000454134 CARMIL3Q8ND23 1372 aa21.73■■□□□ 1.07
NCKIPSD-208ENST00000454134 DALRD3Q5D0E6 543 aaKnown RBP21.72■■□□□ 1.07
NCKIPSD-208ENST00000454134 ZNF526Q8TF50 670 aaPredicted RBP21.72■■□□□ 1.07
NCKIPSD-208ENST00000454134 KDM3BQ7LBC6 1761 aa21.71■■□□□ 1.07
NCKIPSD-208ENST00000454134 NBPF26B4DH59 902 aa21.71■■□□□ 1.07
NCKIPSD-208ENST00000454134 NBPF10Q6P3W6 841 aaKnown RBP21.71■■□□□ 1.07
NCKIPSD-208ENST00000454134 CCDC146Q8IYE0 955 aa21.71■■□□□ 1.07
NCKIPSD-208ENST00000454134 NBPF15Q8N660 670 aa21.71■■□□□ 1.07
NCKIPSD-208ENST00000454134 PNISRQ8TF01 805 aaKnown RBP21.71■■□□□ 1.07
NCKIPSD-208ENST00000454134 GIGYF1O75420 1035 aaPredicted RBP21.7■■□□□ 1.06
NCKIPSD-208ENST00000454134 RIPK4P57078 832 aa21.7■■□□□ 1.06
NCKIPSD-208ENST00000454134 CCDC24Q8N4L8 307 aa21.7■■□□□ 1.06
NCKIPSD-208ENST00000454134 RRP7AQ9Y3A4 280 aaKnown RBP21.69■■□□□ 1.06
NCKIPSD-208ENST00000454134 BCORQ6W2J9 1755 aa21.69■■□□□ 1.06
NCKIPSD-208ENST00000454134 ARFGEF1Q9Y6D6 1849 aa21.69■■□□□ 1.06
NCKIPSD-208ENST00000454134 TMPOP42166 694 aaKnown RBP21.68■■□□□ 1.06
NCKIPSD-208ENST00000454134 C1QTNF8P60827 252 aa21.68■■□□□ 1.06
NCKIPSD-208ENST00000454134 EIF4A1P60842 406 aaKnown RBP21.68■■□□□ 1.06
NCKIPSD-208ENST00000454134 SETDB2Q96T68 719 aa21.68■■□□□ 1.06
NCKIPSD-208ENST00000454134 PRKRIP1Q9H875 184 aaPredicted RBP21.68■■□□□ 1.06
NCKIPSD-208ENST00000454134 LAMB4A4D0S4 1761 aa21.67■■□□□ 1.06
NCKIPSD-208ENST00000454134 WDR43Q15061 677 aaKnown RBP eCLIP21.67■■□□□ 1.06
NCKIPSD-208ENST00000454134 C2CD5Q86YS7 1000 aa21.67■■□□□ 1.06
NCKIPSD-208ENST00000454134 GPBP1L1Q9HC44 474 aaPredicted RBP21.67■■□□□ 1.06
NCKIPSD-208ENST00000454134 NEUROD2Q15784 382 aa21.66■■□□□ 1.06
NCKIPSD-208ENST00000454134 PRR5LQ6MZQ0 368 aa21.66■■□□□ 1.06
NCKIPSD-208ENST00000454134 NGEFQ8N5V2 710 aa21.65■■□□□ 1.06
NCKIPSD-208ENST00000454134 TSPYL4Q9UJ04 414 aa21.65■■□□□ 1.06
NCKIPSD-208ENST00000454134 ADAMTS8Q9UP79 889 aa21.65■■□□□ 1.06
NCKIPSD-208ENST00000454134 ANKRD31Q8N7Z5 1873 aa21.64■■□□□ 1.06
NCKIPSD-208ENST00000454134 H0YIN7 160 aa21.64■■□□□ 1.05
NCKIPSD-208ENST00000454134 DLEC1Q9Y238 1755 aa21.64■■□□□ 1.05
NCKIPSD-208ENST00000454134 NPHP1O15259 732 aa21.63■■□□□ 1.05
NCKIPSD-208ENST00000454134 CNBD1Q8NA66 436 aa21.63■■□□□ 1.05
NCKIPSD-208ENST00000454134 BRIP1Q9BX63 1249 aa21.63■■□□□ 1.05
NCKIPSD-208ENST00000454134 ZNF652Q9Y2D9 606 aa21.63■■□□□ 1.05
NCKIPSD-208ENST00000454134 LMOD3Q0VAK6 560 aa21.62■■□□□ 1.05
NCKIPSD-208ENST00000454134 C9orf131Q5VYM1 1079 aa21.62■■□□□ 1.05
NCKIPSD-208ENST00000454134 CLEC4GQ6UXB4 293 aa21.62■■□□□ 1.05
NCKIPSD-208ENST00000454134 TTLL6Q8N841 843 aa21.62■■□□□ 1.05
NCKIPSD-208ENST00000454134 RUNDC1Q96C34 613 aa21.62■■□□□ 1.05
NCKIPSD-208ENST00000454134 MYL6BP14649 208 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms