RNA–Protein interactions for RNA: ENST00000449954.1

LINC01961-201, Transcript of long intergenic non-protein coding RNA 1961, humanhuman

TSL 5 BASIC

Gene LINC01961, Length 745 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01961-201ENST00000449954 USP31Q70CQ4 1352 aa11.46□□□□□ -0.57
LINC01961-201ENST00000449954 ZCRB1Q8TBF4 217 aaKnown RBP11.46□□□□□ -0.57
LINC01961-201ENST00000449954 MFRPQ9BY79 579 aa11.46□□□□□ -0.57
LINC01961-201ENST00000449954 AMIGO3Q86WK7 504 aa11.45□□□□□ -0.58
LINC01961-201ENST00000449954 MKRN1Q9UHC7 482 aaKnown RBP11.45□□□□□ -0.58
LINC01961-201ENST00000449954 CNTNAP1P78357 1384 aa11.44□□□□□ -0.58
LINC01961-201ENST00000449954 MON2Q7Z3U7 1717 aa11.44□□□□□ -0.58
LINC01961-201ENST00000449954 FBXO22Q8NEZ5 403 aa11.44□□□□□ -0.58
LINC01961-201ENST00000449954 SMARCC1Q92922 1105 aaPredicted RBP11.44□□□□□ -0.58
LINC01961-201ENST00000449954 DCAF5Q96JK2 942 aa11.44□□□□□ -0.58
LINC01961-201ENST00000449954 TMEM121BQ9BXQ6 578 aaPredicted RBP11.44□□□□□ -0.58
LINC01961-201ENST00000449954 CCDC87Q9NVE4 849 aa11.44□□□□□ -0.58
LINC01961-201ENST00000449954 KTN1Q86UP2 1357 aaKnown RBP11.43□□□□□ -0.58
LINC01961-201ENST00000449954 CGNL1Q0VF96 1302 aa11.43□□□□□ -0.58
LINC01961-201ENST00000449954 POTEMA6NI47 508 aa11.43□□□□□ -0.58
LINC01961-201ENST00000449954 SNPHO15079 494 aa11.43□□□□□ -0.58
LINC01961-201ENST00000449954 DPEP1P16444 411 aa11.43□□□□□ -0.58
LINC01961-201ENST00000449954 LBX1P52954 281 aa11.43□□□□□ -0.58
LINC01961-201ENST00000449954 PPARGC1BQ86YN6 1023 aaKnown RBP11.43□□□□□ -0.58
LINC01961-201ENST00000449954 MICALL2Q8IY33 904 aa11.43□□□□□ -0.58
LINC01961-201ENST00000449954 MEGF6O75095 1541 aa11.43□□□□□ -0.58
LINC01961-201ENST00000449954 C4AP0C0L4 1744 aa11.43□□□□□ -0.58
LINC01961-201ENST00000449954 KDM6AO15550 1401 aaPredicted RBP11.43□□□□□ -0.58
LINC01961-201ENST00000449954 SBF1O95248 1867 aa11.42□□□□□ -0.58
LINC01961-201ENST00000449954 EVC2Q86UK5 1308 aa11.42□□□□□ -0.58
LINC01961-201ENST00000449954 TNRC18O15417 2968 aaPredicted RBP11.42□□□□□ -0.58
LINC01961-201ENST00000449954 GLTPD2A6NH11 291 aa11.42□□□□□ -0.58
LINC01961-201ENST00000449954 POTEGQ6S5H5 508 aa11.42□□□□□ -0.58
LINC01961-201ENST00000449954 PIM2Q9P1W9 311 aa11.42□□□□□ -0.58
LINC01961-201ENST00000449954 PDE4DIPQ5VU43 2346 aa11.42□□□□□ -0.58
LINC01961-201ENST00000449954 CCDC85CA6NKD9 419 aa11.41□□□□□ -0.58
LINC01961-201ENST00000449954 DALRD3Q5D0E6 543 aaKnown RBP11.41□□□□□ -0.58
LINC01961-201ENST00000449954 HS6ST3Q8IZP7 471 aa11.41□□□□□ -0.58
LINC01961-201ENST00000449954 NLGN1Q8N2Q7 840 aa11.41□□□□□ -0.58
LINC01961-201ENST00000449954 WBP1LQ9NX94 342 aa11.41□□□□□ -0.58
LINC01961-201ENST00000449954 KCNA3P22001 575 aa11.4□□□□□ -0.58
LINC01961-201ENST00000449954 LCE2DQ5TA82 110 aaPredicted RBP11.4□□□□□ -0.58
LINC01961-201ENST00000449954 SMIM5Q71RC9 77 aa11.4□□□□□ -0.58
LINC01961-201ENST00000449954 IP6K1Q92551 441 aa11.4□□□□□ -0.58
LINC01961-201ENST00000449954 TIAM2Q8IVF5 1701 aa11.4□□□□□ -0.58
LINC01961-201ENST00000449954 GNPATO15228 680 aa11.39□□□□□ -0.59
LINC01961-201ENST00000449954 PCDH11XQ9BZA7 1347 aa11.38□□□□□ -0.59
LINC01961-201ENST00000449954 PCDH11YQ9BZA8 1340 aa11.38□□□□□ -0.59
LINC01961-201ENST00000449954 MAP2P11137 1827 aaKnown RBP11.38□□□□□ -0.59
LINC01961-201ENST00000449954 VIRMAQ69YN4 1812 aaKnown RBP11.38□□□□□ -0.59
LINC01961-201ENST00000449954 ST18O60284 1047 aa11.38□□□□□ -0.59
LINC01961-201ENST00000449954 HSPA8P11142 646 aaKnown RBP11.38□□□□□ -0.59
LINC01961-201ENST00000449954 LMNB1P20700 586 aa11.38□□□□□ -0.59
LINC01961-201ENST00000449954 TMF1P82094 1093 aa11.38□□□□□ -0.59
LINC01961-201ENST00000449954 MPRIPQ6WCQ1 1025 aa11.38□□□□□ -0.59
LINC01961-201ENST00000449954 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.37□□□□□ -0.59
LINC01961-201ENST00000449954 LINC00116Q8NCU8 138 aa11.37□□□□□ -0.59
LINC01961-201ENST00000449954 PARP3Q9Y6F1 533 aa11.37□□□□□ -0.59
LINC01961-201ENST00000449954 LOC102724428A0A0B4J2F2 783 aa11.36□□□□□ -0.59
LINC01961-201ENST00000449954 SIK1P57059 783 aa11.36□□□□□ -0.59
LINC01961-201ENST00000449954 MAP2K1Q02750 393 aaPredicted RBP11.36□□□□□ -0.59
LINC01961-201ENST00000449954 LTV1Q96GA3 475 aaPredicted RBP11.36□□□□□ -0.59
LINC01961-201ENST00000449954 CD163L1Q9NR16 1453 aa11.36□□□□□ -0.59
LINC01961-201ENST00000449954 ITGB4P16144 1822 aa11.35□□□□□ -0.59
LINC01961-201ENST00000449954 VEGFBP49765 207 aa11.35□□□□□ -0.59
LINC01961-201ENST00000449954 NME9Q86XW9 330 aa11.35□□□□□ -0.59
LINC01961-201ENST00000449954 RAPGEF4Q8WZA2 1011 aa11.35□□□□□ -0.59
LINC01961-201ENST00000449954 SBNO2Q9Y2G9 1366 aa11.35□□□□□ -0.59
LINC01961-201ENST00000449954 RASSF7Q02833 373 aa11.34□□□□□ -0.59
LINC01961-201ENST00000449954 NBPF1Q3BBV0 1214 aa11.34□□□□□ -0.59
LINC01961-201ENST00000449954 RTCBQ9Y3I0 505 aaKnown RBP11.34□□□□□ -0.59
LINC01961-201ENST00000449954 EDC4Q6P2E9 1401 aaKnown RBP11.34□□□□□ -0.59
LINC01961-201ENST00000449954 RGPD2P0DJD1 1756 aa11.33□□□□□ -0.59
LINC01961-201ENST00000449954 TRAPPC3LQ5T215 181 aa11.33□□□□□ -0.6
LINC01961-201ENST00000449954 SMG6Q86US8 1419 aaKnown RBP11.33□□□□□ -0.6
LINC01961-201ENST00000449954 PASKQ96RG2 1323 aa11.33□□□□□ -0.6
LINC01961-201ENST00000449954 RTL1A6NKG5 1358 aa11.32□□□□□ -0.6
LINC01961-201ENST00000449954 TMEM88BA6NKF7 163 aa11.32□□□□□ -0.6
LINC01961-201ENST00000449954 POTECB2RU33 542 aa11.32□□□□□ -0.6
LINC01961-201ENST00000449954 GYS1P13807 737 aa11.32□□□□□ -0.6
LINC01961-201ENST00000449954 TATP17735 454 aaPredicted RBP11.32□□□□□ -0.6
LINC01961-201ENST00000449954 TMEM92Q6UXU6 159 aa11.32□□□□□ -0.6
LINC01961-201ENST00000449954 MAP3K19Q56UN5 1328 aa11.32□□□□□ -0.6
LINC01961-201ENST00000449954 HOXC9P31274 260 aa11.31□□□□□ -0.6
LINC01961-201ENST00000449954 PRPF38BQ5VTL8 546 aaKnown RBP11.31□□□□□ -0.6
LINC01961-201ENST00000449954 PIGBQ92521 554 aa11.31□□□□□ -0.6
LINC01961-201ENST00000449954 CFAP44Q96MT7 982 aa11.31□□□□□ -0.6
LINC01961-201ENST00000449954 THSD7BQ9C0I4 1608 aa11.31□□□□□ -0.6
LINC01961-201ENST00000449954 RASSF10A6NK89 507 aa11.3□□□□□ -0.6
LINC01961-201ENST00000449954 PPP1R37O75864 691 aa11.3□□□□□ -0.6
LINC01961-201ENST00000449954 RFC4P35249 363 aa11.3□□□□□ -0.6
LINC01961-201ENST00000449954 ATP6V1AP38606 617 aa11.3□□□□□ -0.6
LINC01961-201ENST00000449954 ITPK1Q13572 414 aa11.3□□□□□ -0.6
LINC01961-201ENST00000449954 ZNF831Q5JPB2 1677 aa11.3□□□□□ -0.6
LINC01961-201ENST00000449954 AMPHP49418 695 aa11.29□□□□□ -0.6
LINC01961-201ENST00000449954 LDHDQ86WU2 507 aa11.29□□□□□ -0.6
LINC01961-201ENST00000449954 BEGAINQ9BUH8 593 aa11.29□□□□□ -0.6
LINC01961-201ENST00000449954 CYP27B1O15528 508 aa11.28□□□□□ -0.6
LINC01961-201ENST00000449954 CHRNA5P30532 468 aa11.28□□□□□ -0.6
LINC01961-201ENST00000449954 NBPF6Q5VWK0 638 aa11.28□□□□□ -0.6
LINC01961-201ENST00000449954 HDGFL2Q7Z4V5 671 aaPredicted RBP11.28□□□□□ -0.6
LINC01961-201ENST00000449954 ARHGEF1Q92888 912 aaKnown RBP11.28□□□□□ -0.6
LINC01961-201ENST00000449954 NBPF4Q96M43 638 aa11.28□□□□□ -0.6
LINC01961-201ENST00000449954 KDRP35968 1356 aa11.28□□□□□ -0.6
LINC01961-201ENST00000449954 COL5A3P25940 1745 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms