RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-208	ENST00000449234	ALDH1L1	O75891	902 aa		14	□□□□□ -0.17
RFX3-208	ENST00000449234	EIF4A1	P60842	406 aa	Known RBP	14	□□□□□ -0.17
RFX3-208	ENST00000449234	GZF1	Q9H116	711 aa	Predicted RBP	14	□□□□□ -0.17
RFX3-208	ENST00000449234	USP42	Q9H9J4	1324 aa	Known RBP	13.99	□□□□□ -0.17
RFX3-208	ENST00000449234	CLCN1	P35523	988 aa		13.99	□□□□□ -0.17
RFX3-208	ENST00000449234	MTX1	Q13505	466 aa		13.99	□□□□□ -0.17
RFX3-208	ENST00000449234	KIF1BP	Q96EK5	621 aa		13.99	□□□□□ -0.17
RFX3-208	ENST00000449234	DDX49	Q9Y6V7	483 aa	Known RBP	13.99	□□□□□ -0.17
RFX3-208	ENST00000449234	PLEKHG2	Q9H7P9	1386 aa		13.98	□□□□□ -0.17
RFX3-208	ENST00000449234	ANP32B	Q92688	251 aa	Known RBP	13.98	□□□□□ -0.17
RFX3-208	ENST00000449234	RTN4	Q9NQC3	1192 aa	Known RBP	13.98	□□□□□ -0.17
RFX3-208	ENST00000449234	EXOC6B	Q9Y2D4	811 aa		13.98	□□□□□ -0.17
RFX3-208	ENST00000449234	LRRFIP2	Q9Y608	721 aa	Known RBP	13.98	□□□□□ -0.17
RFX3-208	ENST00000449234	TTC41P	Q6P2S7	1318 aa		13.97	□□□□□ -0.17
RFX3-208	ENST00000449234	NFAT5	O94916	1531 aa		13.97	□□□□□ -0.17
RFX3-208	ENST00000449234	PNMA6E	A0A0J9YXQ4	647 aa		13.97	□□□□□ -0.17
RFX3-208	ENST00000449234	DNAAF4	Q8WXU2	420 aa		13.97	□□□□□ -0.17
RFX3-208	ENST00000449234	PPP1R9B	Q96SB3	815 aa		13.97	□□□□□ -0.17
RFX3-208	ENST00000449234	LMBRD1	Q9NUN5	540 aa		13.97	□□□□□ -0.17
RFX3-208	ENST00000449234	PLEKHG5	O94827	1062 aa		13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	MBD3	O95983	291 aa		13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	PDIA4	P13667	645 aa	Known RBP	13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	NEK4	P51957	841 aa		13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	PSME1	Q06323	249 aa		13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	CCDC173	Q0VFZ6	552 aa		13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	BEND3	Q5T5X7	828 aa		13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	DBF4	Q9UBU7	674 aa	Predicted RBP	13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	TUBGCP6	Q96RT7	1819 aa		13.96	□□□□□ -0.17
RFX3-208	ENST00000449234	LMO7	Q8WWI1	1683 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	APBB1	O00213	710 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	PRR29	P0C7W0	189 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	TEF	Q10587	303 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	HS1BP3	Q53T59	392 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	NBPF6	Q5VWK0	638 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	ERC1	Q8IUD2	1116 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	RHPN1	Q8TCX5	695 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	NBPF4	Q96M43	638 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	MST1R	Q04912	1400 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	HEG1	Q9ULI3	1381 aa		13.95	□□□□□ -0.18
RFX3-208	ENST00000449234	KDM3B	Q7LBC6	1761 aa		13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	TRIM6-TRIM34	B2RNG4	842 aa		13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	SURF6	O75683	361 aa	Known RBP	13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	HSPA4	P34932	840 aa		13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	PPP1R42	Q7Z4L9	355 aa		13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	ARHGEF25	Q86VW2	580 aa		13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	CNTROB	Q8N137	903 aa		13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	RUFY2	Q8WXA3	655 aa		13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	TMX3	Q96JJ7	454 aa		13.94	□□□□□ -0.18
RFX3-208	ENST00000449234	RNMT	O43148	476 aa	Known RBP	13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	BRD1	O95696	1058 aa		13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	MCTP1	Q6DN14	999 aa		13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	GAS2L3	Q86XJ1	694 aa		13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	RILPL2	Q969X0	211 aa		13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	TRIM44	Q96DX7	344 aa	Predicted RBP	13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	HYPK	Q9NX55	129 aa		13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	ZNF142	P52746	1687 aa	Predicted RBP	13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	SLIT3	O75094	1523 aa		13.93	□□□□□ -0.18
RFX3-208	ENST00000449234	BTBD11	A6QL63	1104 aa		13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	GLRX3	O76003	335 aa	Known RBP	13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	C1orf141	Q5JVX7	400 aa		13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	KSR2	Q6VAB6	950 aa		13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	LTV1	Q96GA3	475 aa	Predicted RBP	13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	PHAX	Q9H814	394 aa	Known RBP	13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	RRAGD	Q9NQL2	400 aa	Predicted RBP	13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	ZDHHC9	Q9Y397	364 aa		13.92	□□□□□ -0.18
RFX3-208	ENST00000449234	LTN1	O94822	1766 aa		13.91	□□□□□ -0.18
RFX3-208	ENST00000449234	HIP1	O00291	1037 aa		13.91	□□□□□ -0.18
RFX3-208	ENST00000449234	SGSM2	O43147	1006 aa		13.91	□□□□□ -0.18
RFX3-208	ENST00000449234	DDX58	O95786	925 aa	Known RBP	13.91	□□□□□ -0.18
RFX3-208	ENST00000449234	GPATCH3	Q96I76	525 aa		13.91	□□□□□ -0.18
RFX3-208	ENST00000449234	PANK2	Q9BZ23	570 aa		13.91	□□□□□ -0.18
RFX3-208	ENST00000449234	LGR6	Q9HBX8	967 aa		13.91	□□□□□ -0.18
RFX3-208	ENST00000449234	ANO2	Q9NQ90	1003 aa		13.91	□□□□□ -0.18
RFX3-208	ENST00000449234	UTY	O14607	1347 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	PI4KAP2	A4QPH2	592 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	ESPN	B1AK53	854 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	SRGAP3	O43295	1099 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	GC	P02774	474 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	NUTM2G	Q5VZR2	741 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	KIAA1211	Q6ZU35	1233 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	PI4KAP1	Q8N8J0	262 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	PI4K2B	Q8TCG2	481 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	KCNB2	Q92953	911 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	SYAP1	Q96A49	352 aa	Predicted RBP	13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	TM6SF1	Q9BZW5	370 aa		13.9	□□□□□ -0.18
RFX3-208	ENST00000449234	WDR33	Q9C0J8	1336 aa	Known RBP	13.9	□□□□□ -0.19
RFX3-208	ENST00000449234	SETD1B	Q9UPS6	1966 aa	Known RBP	13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	GIGYF1	O75420	1035 aa	Predicted RBP	13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	PRKAR2A	P13861	404 aa	Known RBP	13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	NASP	P49321	788 aa	Predicted RBP	13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	ESCO1	Q5FWF5	840 aa		13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	C14orf37	Q86TY3	774 aa		13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	CLASRP	Q8N2M8	674 aa	Known RBP	13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	ZGPAT	Q8N5A5	531 aa	Known RBP	13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	RAD50	Q92878	1312 aa		13.89	□□□□□ -0.19
RFX3-208	ENST00000449234	CAMTA1	Q9Y6Y1	1673 aa		13.88	□□□□□ -0.19
RFX3-208	ENST00000449234	PRPF40A	O75400	957 aa	Known RBP	13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms