RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 GAS2L2Q8NHY3 880 aa17.89■□□□□ 0.45
HMGB3-204ENST00000448905 GNAT3A8MTJ3 354 aa17.88■□□□□ 0.45
HMGB3-204ENST00000448905 SERPINB2P05120 415 aa17.88■□□□□ 0.45
HMGB3-204ENST00000448905 CANXP27824 592 aaKnown RBP17.88■□□□□ 0.45
HMGB3-204ENST00000448905 RNF181Q9P0P0 153 aa17.88■□□□□ 0.45
HMGB3-204ENST00000448905 KIF13BQ9NQT8 1826 aa17.88■□□□□ 0.45
HMGB3-204ENST00000448905 CNGB1Q14028 1251 aaPredicted RBP17.87■□□□□ 0.45
HMGB3-204ENST00000448905 NFIXQ14938 502 aa17.87■□□□□ 0.45
HMGB3-204ENST00000448905 NMRK2Q9NPI5 230 aa17.87■□□□□ 0.45
HMGB3-204ENST00000448905 MYH14Q7Z406 1995 aaKnown RBP17.87■□□□□ 0.45
HMGB3-204ENST00000448905 H0YIN7 160 aa17.86■□□□□ 0.45
HMGB3-204ENST00000448905 RBM46Q8TBY0 533 aaKnown RBP17.86■□□□□ 0.45
HMGB3-204ENST00000448905 ZBTB1Q9Y2K1 713 aa17.86■□□□□ 0.45
HMGB3-204ENST00000448905 COL5A3P25940 1745 aaPredicted RBP17.85■□□□□ 0.45
HMGB3-204ENST00000448905 TTLL6Q8N841 843 aa17.85■□□□□ 0.45
HMGB3-204ENST00000448905 CFAP53Q96M91 514 aa17.85■□□□□ 0.45
HMGB3-204ENST00000448905 PDZRN3Q9UPQ7 1066 aa17.85■□□□□ 0.45
HMGB3-204ENST00000448905 FSTL1Q12841 308 aa17.84■□□□□ 0.45
HMGB3-204ENST00000448905 ZNF790Q6PG37 636 aa17.84■□□□□ 0.45
HMGB3-204ENST00000448905 NUDCQ9Y266 331 aa17.84■□□□□ 0.45
HMGB3-204ENST00000448905 C4AP0C0L4 1744 aa17.84■□□□□ 0.45
HMGB3-204ENST00000448905 ZNF831Q5JPB2 1677 aa17.83■□□□□ 0.45
HMGB3-204ENST00000448905 COL15A1P39059 1388 aa17.83■□□□□ 0.45
HMGB3-204ENST00000448905 EIF5P55010 431 aaKnown RBP17.83■□□□□ 0.44
HMGB3-204ENST00000448905 BICDL1Q6ZP65 573 aa17.83■□□□□ 0.44
HMGB3-204ENST00000448905 C2CD5Q86YS7 1000 aa17.83■□□□□ 0.44
HMGB3-204ENST00000448905 IL17REQ8NFR9 667 aa17.83■□□□□ 0.44
HMGB3-204ENST00000448905 RRAGCQ9HB90 399 aa17.83■□□□□ 0.44
HMGB3-204ENST00000448905 LMNB1P20700 586 aa17.82■□□□□ 0.44
HMGB3-204ENST00000448905 FMNL2Q96PY5 1086 aa17.82■□□□□ 0.44
HMGB3-204ENST00000448905 NPC1L1Q9UHC9 1359 aa17.81■□□□□ 0.44
HMGB3-204ENST00000448905 NPHP1O15259 732 aa17.81■□□□□ 0.44
HMGB3-204ENST00000448905 PDE6BP35913 854 aa17.81■□□□□ 0.44
HMGB3-204ENST00000448905 ZNF496Q96IT1 587 aaPredicted RBP17.81■□□□□ 0.44
HMGB3-204ENST00000448905 BCL2L12Q9HB09 334 aa17.81■□□□□ 0.44
HMGB3-204ENST00000448905 ZNF330Q9Y3S2 320 aaPredicted RBP17.81■□□□□ 0.44
HMGB3-204ENST00000448905 BRCA1P38398 1863 aaKnown RBP17.8■□□□□ 0.44
HMGB3-204ENST00000448905 ZC3H4Q9UPT8 1303 aaKnown RBP17.8■□□□□ 0.44
HMGB3-204ENST00000448905 IL6STP40189 918 aaPredicted RBP17.8■□□□□ 0.44
HMGB3-204ENST00000448905 HTRA3P83110 453 aa17.8■□□□□ 0.44
HMGB3-204ENST00000448905 BRIP1Q9BX63 1249 aa17.8■□□□□ 0.44
HMGB3-204ENST00000448905 BTBD11A6QL63 1104 aa17.79■□□□□ 0.44
HMGB3-204ENST00000448905 DPY19L2Q6NUT2 758 aa17.79■□□□□ 0.44
HMGB3-204ENST00000448905 DNAJC5GQ8N7S2 189 aa17.79■□□□□ 0.44
HMGB3-204ENST00000448905 RTF1Q92541 710 aaKnown RBP17.79■□□□□ 0.44
HMGB3-204ENST00000448905 ZNF622Q969S3 477 aaKnown RBP eCLIP17.79■□□□□ 0.443e-7■■■■□ 22
HMGB3-204ENST00000448905 SETDB2Q96T68 719 aa17.79■□□□□ 0.44
HMGB3-204ENST00000448905 TBC1D2BQ9UPU7 963 aa17.79■□□□□ 0.44
HMGB3-204ENST00000448905 VEGFAP15692 232 aaPredicted RBP17.78■□□□□ 0.44
HMGB3-204ENST00000448905 SMC1BQ8NDV3 1235 aa17.78■□□□□ 0.44
HMGB3-204ENST00000448905 GLTPD2A6NH11 291 aa17.77■□□□□ 0.44
HMGB3-204ENST00000448905 TBC1D9BQ66K14 1250 aa17.77■□□□□ 0.44
HMGB3-204ENST00000448905 TJP1Q07157 1748 aa17.77■□□□□ 0.44
HMGB3-204ENST00000448905 HEG1Q9ULI3 1381 aa17.77■□□□□ 0.43
HMGB3-204ENST00000448905 PRKAR2BP31323 418 aa17.76■□□□□ 0.43
HMGB3-204ENST00000448905 ARFGEF1Q9Y6D6 1849 aa17.75■□□□□ 0.43
HMGB3-204ENST00000448905 A1BGP04217 495 aa17.75■□□□□ 0.43
HMGB3-204ENST00000448905 U2AF1L5P0DN76 240 aaPredicted RBP17.75■□□□□ 0.43
HMGB3-204ENST00000448905 U2AF1Q01081 240 aaKnown RBP eCLIP17.75■□□□□ 0.43
HMGB3-204ENST00000448905 RASSF7Q02833 373 aa17.75■□□□□ 0.43
HMGB3-204ENST00000448905 PHACTR3Q96KR7 559 aa17.75■□□□□ 0.43
HMGB3-204ENST00000448905 KCPQ6ZWJ8 1503 aa17.74■□□□□ 0.43
HMGB3-204ENST00000448905 ST5P78524 1137 aa17.74■□□□□ 0.43
HMGB3-204ENST00000448905 CNKSR1Q969H4 720 aa17.74■□□□□ 0.43
HMGB3-204ENST00000448905 MRC1P22897 1456 aa17.74■□□□□ 0.43
HMGB3-204ENST00000448905 NEFMP07197 916 aa17.73■□□□□ 0.43
HMGB3-204ENST00000448905 SNRPA1P09661 255 aaKnown RBP17.73■□□□□ 0.43
HMGB3-204ENST00000448905 CLEC4GQ6UXB4 293 aa17.73■□□□□ 0.43
HMGB3-204ENST00000448905 DZIP3Q86Y13 1208 aaKnown RBP17.73■□□□□ 0.43
HMGB3-204ENST00000448905 CNBD1Q8NA66 436 aa17.73■□□□□ 0.43
HMGB3-204ENST00000448905 SCN11AQ9UI33 1791 aa17.73■□□□□ 0.43
HMGB3-204ENST00000448905 ADAMTS7Q9UKP4 1686 aa17.72■□□□□ 0.43
HMGB3-204ENST00000448905 CARMIL3Q8ND23 1372 aa17.72■□□□□ 0.43
HMGB3-204ENST00000448905 C21orf2O43822 256 aa17.72■□□□□ 0.43
HMGB3-204ENST00000448905 SOGA3Q5TF21 947 aa17.72■□□□□ 0.43
HMGB3-204ENST00000448905 PRR5LQ6MZQ0 368 aa17.72■□□□□ 0.43
HMGB3-204ENST00000448905 KLRG1Q96E93 195 aa17.72■□□□□ 0.43
HMGB3-204ENST00000448905 RSPH6AQ9H0K4 717 aa17.72■□□□□ 0.43
HMGB3-204ENST00000448905 ZNF652Q9Y2D9 606 aa17.72■□□□□ 0.43
HMGB3-204ENST00000448905 SBF1O95248 1867 aa17.71■□□□□ 0.43
HMGB3-204ENST00000448905 HTATSF1O43719 755 aaKnown RBP17.71■□□□□ 0.43
HMGB3-204ENST00000448905 ERFEQ4G0M1 354 aa17.71■□□□□ 0.43
HMGB3-204ENST00000448905 ZNF219Q9P2Y4 722 aaPredicted RBP17.71■□□□□ 0.43
HMGB3-204ENST00000448905 USP16Q9Y5T5 823 aa17.71■□□□□ 0.43
HMGB3-204ENST00000448905 CEMIPQ8WUJ3 1361 aa17.7■□□□□ 0.42
HMGB3-204ENST00000448905 CAMTA2O94983 1202 aa17.7■□□□□ 0.42
HMGB3-204ENST00000448905 STYK1Q6J9G0 422 aa17.7■□□□□ 0.42
HMGB3-204ENST00000448905 WDR90Q96KV7 1748 aa17.69■□□□□ 0.42
HMGB3-204ENST00000448905 NFKBIEO00221 500 aa17.69■□□□□ 0.42
HMGB3-204ENST00000448905 KCNQ3O43525 872 aa17.69■□□□□ 0.42
HMGB3-204ENST00000448905 PRELPP51888 382 aa17.69■□□□□ 0.42
HMGB3-204ENST00000448905 TPTE2Q6XPS3 522 aa17.69■□□□□ 0.42
HMGB3-204ENST00000448905 NBPF5PQ86XG9 351 aaPredicted RBP17.69■□□□□ 0.42
HMGB3-204ENST00000448905 CCDC24Q8N4L8 307 aa17.69■□□□□ 0.42
HMGB3-204ENST00000448905 MASTLQ96GX5 879 aa17.69■□□□□ 0.42
HMGB3-204ENST00000448905 AFDNP55196 1824 aaKnown RBP17.69■□□□□ 0.42
HMGB3-204ENST00000448905 PPP2R1AP30153 589 aa17.68■□□□□ 0.42
HMGB3-204ENST00000448905 TAF7Q15545 349 aaPredicted RBP17.68■□□□□ 0.42
HMGB3-204ENST00000448905 MCM10Q7L590 875 aa17.68■□□□□ 0.42
HMGB3-204ENST00000448905 VIRMAQ69YN4 1812 aaKnown RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms