RNA–Protein interactions for RNA: ENST00000439518.5

NCKIPSD-206, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 1 (best)

Gene NCKIPSD, Length 1,214 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-206ENST00000439518 STARD3NLO95772 234 aa27.12■■□□□ 1.93
NCKIPSD-206ENST00000439518 TM4SF1P30408 202 aa27.12■■□□□ 1.93
NCKIPSD-206ENST00000439518 USPL1Q5W0Q7 1092 aa27.12■■□□□ 1.93
NCKIPSD-206ENST00000439518 COL15A1P39059 1388 aa27.11■■□□□ 1.93
NCKIPSD-206ENST00000439518 NARFQ9UHQ1 456 aa27.11■■□□□ 1.93
NCKIPSD-206ENST00000439518 POLRMTO00411 1230 aaKnown RBP27.09■■□□□ 1.93
NCKIPSD-206ENST00000439518 TEX13AQ9BXU3 409 aaPredicted RBP27.09■■□□□ 1.93
NCKIPSD-206ENST00000439518 N4BP2Q86UW6 1770 aaPredicted RBP27.09■■□□□ 1.93
NCKIPSD-206ENST00000439518 DPEP1P16444 411 aa27.08■■□□□ 1.93
NCKIPSD-206ENST00000439518 CANXP27824 592 aaKnown RBP27.08■■□□□ 1.93
NCKIPSD-206ENST00000439518 EIF5P55010 431 aaKnown RBP27.08■■□□□ 1.93
NCKIPSD-206ENST00000439518 FMNL2Q96PY5 1086 aa27.08■■□□□ 1.93
NCKIPSD-206ENST00000439518 BTBD11A6QL63 1104 aa27.07■■□□□ 1.92
NCKIPSD-206ENST00000439518 KCNQ3O43525 872 aa27.07■■□□□ 1.92
NCKIPSD-206ENST00000439518 BCL2L12Q9HB09 334 aa27.07■■□□□ 1.92
NCKIPSD-206ENST00000439518 HTATSF1O43719 755 aaKnown RBP27.06■■□□□ 1.92
NCKIPSD-206ENST00000439518 KCNA3P22001 575 aa27.06■■□□□ 1.92
NCKIPSD-206ENST00000439518 MCM10Q7L590 875 aa27.06■■□□□ 1.92
NCKIPSD-206ENST00000439518 RTF1Q92541 710 aaKnown RBP27.06■■□□□ 1.92
NCKIPSD-206ENST00000439518 ADCY9O60503 1353 aa27.05■■□□□ 1.92
NCKIPSD-206ENST00000439518 NFIXQ14938 502 aa27.04■■□□□ 1.92
NCKIPSD-206ENST00000439518 BCS1LQ9Y276 419 aa27.04■■□□□ 1.92
NCKIPSD-206ENST00000439518 ATP10DQ9P241 1426 aa27.03■■□□□ 1.92
NCKIPSD-206ENST00000439518 A0A087WZG4 1122 aa27.02■■□□□ 1.92
NCKIPSD-206ENST00000439518 DCTN1Q14203 1278 aa27.02■■□□□ 1.92
NCKIPSD-206ENST00000439518 BRCA1P38398 1863 aaKnown RBP27.01■■□□□ 1.91
NCKIPSD-206ENST00000439518 A1BGP04217 495 aa27■■□□□ 1.91
NCKIPSD-206ENST00000439518 IL6STP40189 918 aaPredicted RBP27■■□□□ 1.91
NCKIPSD-206ENST00000439518 C1QTNF8P60827 252 aa27■■□□□ 1.91
NCKIPSD-206ENST00000439518 PLEKHF1Q96S99 279 aa27■■□□□ 1.91
NCKIPSD-206ENST00000439518 PIM2Q9P1W9 311 aa26.99■■□□□ 1.91
NCKIPSD-206ENST00000439518 GIGYF1O75420 1035 aaPredicted RBP26.98■■□□□ 1.91
NCKIPSD-206ENST00000439518 USP16Q9Y5T5 823 aa26.98■■□□□ 1.91
NCKIPSD-206ENST00000439518 NRXN2Q9P2S2 1712 aa26.98■■□□□ 1.91
NCKIPSD-206ENST00000439518 CHRNA5P30532 468 aa26.97■■□□□ 1.91
NCKIPSD-206ENST00000439518 RALBP1Q15311 655 aa26.97■■□□□ 1.91
NCKIPSD-206ENST00000439518 AFDNP55196 1824 aaKnown RBP26.96■■□□□ 1.91
NCKIPSD-206ENST00000439518 SERPINB2P05120 415 aa26.96■■□□□ 1.91
NCKIPSD-206ENST00000439518 NEFMP07197 916 aa26.96■■□□□ 1.91
NCKIPSD-206ENST00000439518 TAF7Q15545 349 aaPredicted RBP26.96■■□□□ 1.91
NCKIPSD-206ENST00000439518 PRAMEF22A3QJZ6 481 aa26.95■■□□□ 1.9
NCKIPSD-206ENST00000439518 SNRPA1P09661 255 aaKnown RBP26.95■■□□□ 1.9
NCKIPSD-206ENST00000439518 DDX10Q13206 875 aaKnown RBP26.95■■□□□ 1.9
NCKIPSD-206ENST00000439518 TBC1D2BQ9UPU7 963 aa26.95■■□□□ 1.9
NCKIPSD-206ENST00000439518 DALRD3Q5D0E6 543 aaKnown RBP26.94■■□□□ 1.9
NCKIPSD-206ENST00000439518 ARHGAP27Q6ZUM4 889 aa26.94■■□□□ 1.9
NCKIPSD-206ENST00000439518 ZNF330Q9Y3S2 320 aaPredicted RBP26.94■■□□□ 1.9
NCKIPSD-206ENST00000439518 NFE2L2Q16236 605 aa26.93■■□□□ 1.9
NCKIPSD-206ENST00000439518 TBC1D9BQ66K14 1250 aa26.93■■□□□ 1.9
NCKIPSD-206ENST00000439518 ARFGEF1Q9Y6D6 1849 aa26.93■■□□□ 1.9
NCKIPSD-206ENST00000439518 SCN7AQ01118 1682 aa26.92■■□□□ 1.9
NCKIPSD-206ENST00000439518 PNNQ9H307 717 aaKnown RBP26.92■■□□□ 1.9
NCKIPSD-206ENST00000439518 GPBP1L1Q9HC44 474 aaPredicted RBP26.92■■□□□ 1.9
NCKIPSD-206ENST00000439518 DLG5Q8TDM6 1919 aa26.91■■□□□ 1.9
NCKIPSD-206ENST00000439518 CAMTA2O94983 1202 aa26.91■■□□□ 1.9
NCKIPSD-206ENST00000439518 BICDL1Q6ZP65 573 aa26.91■■□□□ 1.9
NCKIPSD-206ENST00000439518 NPM2Q86SE8 214 aaKnown RBP26.9■■□□□ 1.9
NCKIPSD-206ENST00000439518 MIS18AQ9NYP9 233 aa26.9■■□□□ 1.9
NCKIPSD-206ENST00000439518 PIP4K2AP48426 406 aaPredicted RBP26.89■■□□□ 1.9
NCKIPSD-206ENST00000439518 ZNF526Q8TF50 670 aaPredicted RBP26.89■■□□□ 1.9
NCKIPSD-206ENST00000439518 CARMIL3Q8ND23 1372 aa26.88■■□□□ 1.89
NCKIPSD-206ENST00000439518 DZIP3Q86Y13 1208 aaKnown RBP26.88■■□□□ 1.89
NCKIPSD-206ENST00000439518 PNISRQ8TF01 805 aaKnown RBP26.87■■□□□ 1.89
NCKIPSD-206ENST00000439518 MAPK8IP3Q9UPT6 1336 aa26.87■■□□□ 1.89
NCKIPSD-206ENST00000439518 NBPF26B4DH59 902 aa26.86■■□□□ 1.89
NCKIPSD-206ENST00000439518 NBPF10Q6P3W6 841 aaKnown RBP26.86■■□□□ 1.89
NCKIPSD-206ENST00000439518 NBPF15Q8N660 670 aa26.86■■□□□ 1.89
NCKIPSD-206ENST00000439518 THUMPD2Q9BTF0 503 aaKnown RBP26.86■■□□□ 1.89
NCKIPSD-206ENST00000439518 MYBBP1AQ9BQG0 1328 aaKnown RBP26.85■■□□□ 1.89
NCKIPSD-206ENST00000439518 PRR5LQ6MZQ0 368 aa26.84■■□□□ 1.89
NCKIPSD-206ENST00000439518 C2CD5Q86YS7 1000 aa26.84■■□□□ 1.89
NCKIPSD-206ENST00000439518 BCORQ6W2J9 1755 aa26.84■■□□□ 1.89
NCKIPSD-206ENST00000439518 CLEC4GQ6UXB4 293 aa26.83■■□□□ 1.89
NCKIPSD-206ENST00000439518 SETDB2Q96T68 719 aa26.83■■□□□ 1.89
NCKIPSD-206ENST00000439518 BRIP1Q9BX63 1249 aa26.83■■□□□ 1.89
NCKIPSD-206ENST00000439518 KDM3BQ7LBC6 1761 aa26.83■■□□□ 1.89
NCKIPSD-206ENST00000439518 DLEC1Q9Y238 1755 aa26.83■■□□□ 1.89
NCKIPSD-206ENST00000439518 H0YIN7 160 aa26.82■■□□□ 1.88
NCKIPSD-206ENST00000439518 EIF4A1P60842 406 aaKnown RBP26.82■■□□□ 1.88
NCKIPSD-206ENST00000439518 C9orf131Q5VYM1 1079 aa26.82■■□□□ 1.88
NCKIPSD-206ENST00000439518 SENP3-EIF4A1A0A087X0R7 540 aa26.81■■□□□ 1.88
NCKIPSD-206ENST00000439518 TTLL6Q8N841 843 aa26.81■■□□□ 1.88
NCKIPSD-206ENST00000439518 RGL2O15211 777 aa26.8■■□□□ 1.88
NCKIPSD-206ENST00000439518 PDZRN3Q9UPQ7 1066 aa26.8■■□□□ 1.88
NCKIPSD-206ENST00000439518 ANKRD31Q8N7Z5 1873 aa26.8■■□□□ 1.88
NCKIPSD-206ENST00000439518 PDE6BP35913 854 aa26.79■■□□□ 1.88
NCKIPSD-206ENST00000439518 CCDC24Q8N4L8 307 aa26.79■■□□□ 1.88
NCKIPSD-206ENST00000439518 KIF3CO14782 793 aa26.78■■□□□ 1.88
NCKIPSD-206ENST00000439518 RIPK4P57078 832 aa26.78■■□□□ 1.88
NCKIPSD-206ENST00000439518 CNBD1Q8NA66 436 aa26.78■■□□□ 1.88
NCKIPSD-206ENST00000439518 ZNF652Q9Y2D9 606 aa26.78■■□□□ 1.88
NCKIPSD-206ENST00000439518 LAMB4A4D0S4 1761 aa26.78■■□□□ 1.88
NCKIPSD-206ENST00000439518 TMPOP42166 694 aaKnown RBP26.77■■□□□ 1.88
NCKIPSD-206ENST00000439518 RNF181Q9P0P0 153 aa26.75■■□□□ 1.87
NCKIPSD-206ENST00000439518 SBF1O95248 1867 aa26.74■■□□□ 1.87
NCKIPSD-206ENST00000439518 ST5P78524 1137 aa26.73■■□□□ 1.87
NCKIPSD-206ENST00000439518 ZNF622Q969S3 477 aaKnown RBP eCLIP26.73■■□□□ 1.878e-7■□□□□ 8.8
NCKIPSD-206ENST00000439518 COL11A2P13942 1736 aaPredicted RBP26.73■■□□□ 1.87
NCKIPSD-206ENST00000439518 NPHP1O15259 732 aa26.72■■□□□ 1.87
NCKIPSD-206ENST00000439518 RASSF7Q02833 373 aa26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms