RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 CCDC9Q9Y3X0 531 aaKnown RBP11.71□□□□□ -0.54
CUX1-206ENST00000437600 VIRMAQ69YN4 1812 aaKnown RBP11.7□□□□□ -0.54
CUX1-206ENST00000437600 RBM25P49756 843 aaKnown RBP11.7□□□□□ -0.54
CUX1-206ENST00000437600 GOLGB1Q14789 3259 aaKnown RBP11.7□□□□□ -0.54
CUX1-206ENST00000437600 FAM208AQ9UK61 1670 aaKnown RBP11.7□□□□□ -0.54
CUX1-206ENST00000437600 MCM4P33991 863 aa11.7□□□□□ -0.54
CUX1-206ENST00000437600 PIP4K2AP48426 406 aaPredicted RBP11.7□□□□□ -0.54
CUX1-206ENST00000437600 EIF4A1P60842 406 aaKnown RBP11.7□□□□□ -0.54
CUX1-206ENST00000437600 TTC22Q5TAA0 569 aa11.7□□□□□ -0.54
CUX1-206ENST00000437600 RPAP2Q8IXW5 612 aaPredicted RBP11.7□□□□□ -0.54
CUX1-206ENST00000437600 LRRFIP2Q9Y608 721 aaKnown RBP11.7□□□□□ -0.54
CUX1-206ENST00000437600 CEMIPQ8WUJ3 1361 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 CDC45O75419 566 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 NOL8Q76FK4 1167 aaKnown RBP11.69□□□□□ -0.54
CUX1-206ENST00000437600 DDX54Q8TDD1 881 aaKnown RBP11.69□□□□□ -0.54
CUX1-206ENST00000437600 CHAMP1Q96JM3 812 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 CHMP5Q9NZZ3 219 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 PTPRCP08575 1304 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 PROSER3Q2NL68 480 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 AMOTQ4VCS5 1084 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 NFATC2IPQ8NCF5 419 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 RILPL2Q969X0 211 aa11.69□□□□□ -0.54
CUX1-206ENST00000437600 DTNBO60941 627 aa11.68□□□□□ -0.54
CUX1-206ENST00000437600 TATP17735 454 aaPredicted RBP11.68□□□□□ -0.54
CUX1-206ENST00000437600 FOXD4L5Q5VV16 416 aaPredicted RBP11.68□□□□□ -0.54
CUX1-206ENST00000437600 FOXD4L4Q8WXT5 416 aaPredicted RBP11.68□□□□□ -0.54
CUX1-206ENST00000437600 NGLY1Q96IV0 654 aa11.68□□□□□ -0.54
CUX1-206ENST00000437600 GNAI2P04899 355 aa11.68□□□□□ -0.54
CUX1-206ENST00000437600 COL22A1Q8NFW1 1626 aaPredicted RBP11.67□□□□□ -0.54
CUX1-206ENST00000437600 ATP10DQ9P241 1426 aa11.67□□□□□ -0.54
CUX1-206ENST00000437600 TRIM6-TRIM34B2RNG4 842 aa11.67□□□□□ -0.54
CUX1-206ENST00000437600 CYP27B1O15528 508 aa11.67□□□□□ -0.54
CUX1-206ENST00000437600 NBPF7P0C2Y1 421 aaPredicted RBP11.67□□□□□ -0.54
CUX1-206ENST00000437600 AIMP1Q12904 312 aaKnown RBP11.67□□□□□ -0.54
CUX1-206ENST00000437600 NUTM1Q86Y26 1132 aa11.67□□□□□ -0.54
CUX1-206ENST00000437600 TNPO1Q92973 898 aaKnown RBP11.67□□□□□ -0.54
CUX1-206ENST00000437600 USP44Q9H0E7 712 aa11.67□□□□□ -0.54
CUX1-206ENST00000437600 PLCH1Q4KWH8 1693 aa11.67□□□□□ -0.54
CUX1-206ENST00000437600 LRP6O75581 1613 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 PI4KAP2A4QPH2 592 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 TRAK2O60296 914 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 PKP1Q13835 747 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 UNC5CLQ8IV45 518 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 PI4KAP1Q8N8J0 262 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 USP26Q9BXU7 913 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 A0A0G2JS52 829 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 PDE1AP54750 535 aa11.66□□□□□ -0.54
CUX1-206ENST00000437600 PANK2Q9BZ23 570 aa11.65□□□□□ -0.54
CUX1-206ENST00000437600 JCADQ9P266 1359 aa11.65□□□□□ -0.54
CUX1-206ENST00000437600 MYL6BP14649 208 aa11.65□□□□□ -0.54
CUX1-206ENST00000437600 SSFA2P28290 1259 aa11.65□□□□□ -0.54
CUX1-206ENST00000437600 CCT4P50991 539 aaKnown RBP11.65□□□□□ -0.54
CUX1-206ENST00000437600 COL14A1Q05707 1796 aaKnown RBP11.65□□□□□ -0.54
CUX1-206ENST00000437600 PHKG2P15735 406 aa11.65□□□□□ -0.55
CUX1-206ENST00000437600 CARD10Q9BWT7 1032 aa11.65□□□□□ -0.55
CUX1-206ENST00000437600 NCAPD2Q15021 1401 aa11.65□□□□□ -0.55
CUX1-206ENST00000437600 GIGYF1O75420 1035 aaPredicted RBP11.64□□□□□ -0.55
CUX1-206ENST00000437600 SURF6O75683 361 aaKnown RBP11.64□□□□□ -0.55
CUX1-206ENST00000437600 IL2RBP14784 551 aa11.64□□□□□ -0.55
CUX1-206ENST00000437600 MEX3CQ5U5Q3 659 aaKnown RBP11.64□□□□□ -0.55
CUX1-206ENST00000437600 SRCAPQ6ZRS2 3230 aa11.64□□□□□ -0.55
CUX1-206ENST00000437600 K7ELQ4 463 aaPredicted RBP11.64□□□□□ -0.55
CUX1-206ENST00000437600 HMMRO75330 724 aa11.64□□□□□ -0.55
CUX1-206ENST00000437600 ZGPATQ8N5A5 531 aaKnown RBP11.64□□□□□ -0.55
CUX1-206ENST00000437600 JARID2Q92833 1246 aaPredicted RBP11.64□□□□□ -0.55
CUX1-206ENST00000437600 LARP6Q9BRS8 491 aaKnown RBP11.64□□□□□ -0.55
CUX1-206ENST00000437600 LRRC37A3O60309 1634 aa11.63□□□□□ -0.55
CUX1-206ENST00000437600 FOXD4L6Q3SYB3 417 aaPredicted RBP11.63□□□□□ -0.55
CUX1-206ENST00000437600 TPRNQ4KMQ1 711 aa11.63□□□□□ -0.55
CUX1-206ENST00000437600 FOXD4L3Q6VB84 417 aaPredicted RBP11.63□□□□□ -0.55
CUX1-206ENST00000437600 PPP1R42Q7Z4L9 355 aa11.63□□□□□ -0.55
CUX1-206ENST00000437600 UBTFL1P0CB47 393 aaPredicted RBP11.63□□□□□ -0.55
CUX1-206ENST00000437600 FAM182BQ5T319 152 aa11.63□□□□□ -0.55
CUX1-206ENST00000437600 ZCRB1Q8TBF4 217 aaKnown RBP11.63□□□□□ -0.55
CUX1-206ENST00000437600 ZNF496Q96IT1 587 aaPredicted RBP11.63□□□□□ -0.55
CUX1-206ENST00000437600 LRRCC1Q9C099 1032 aa11.63□□□□□ -0.55
CUX1-206ENST00000437600 IL25Q9H293 177 aa11.63□□□□□ -0.55
CUX1-206ENST00000437600 SPG7Q9UQ90 795 aa11.63□□□□□ -0.55
CUX1-206ENST00000437600 FAM98CQ17RN3 349 aaKnown RBP11.62□□□□□ -0.55
CUX1-206ENST00000437600 ZNF790Q6PG37 636 aa11.62□□□□□ -0.55
CUX1-206ENST00000437600 IFNL2Q8IZJ0 200 aa11.62□□□□□ -0.55
CUX1-206ENST00000437600 SRGAP3O43295 1099 aa11.62□□□□□ -0.55
CUX1-206ENST00000437600 CWF19L2Q2TBE0 894 aaKnown RBP11.62□□□□□ -0.55
CUX1-206ENST00000437600 SNX21Q969T3 373 aa11.62□□□□□ -0.55
CUX1-206ENST00000437600 KDM6AO15550 1401 aaPredicted RBP11.62□□□□□ -0.55
CUX1-206ENST00000437600 A0A0U1RQG5 324 aaPredicted RBP11.62□□□□□ -0.55
CUX1-206ENST00000437600 ATP8B2P98198 1209 aa11.62□□□□□ -0.55
CUX1-206ENST00000437600 SLC52A2Q9HAB3 445 aa11.62□□□□□ -0.55
CUX1-206ENST00000437600 FGD1P98174 961 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 USP16Q9Y5T5 823 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 OVOS2A0A0G2JMS6 1433 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 XRCC6P12956 609 aaKnown RBP eCLIP11.61□□□□□ -0.55
CUX1-206ENST00000437600 MX1P20591 662 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 UPF3BQ9BZI7 483 aaKnown RBP11.61□□□□□ -0.55
CUX1-206ENST00000437600 SRCIN1Q9C0H9 1055 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 ANO2Q9NQ90 1003 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 BABAM1Q9NWV8 329 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 PALD1Q9ULE6 856 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 MAP3K2Q9Y2U5 619 aa11.61□□□□□ -0.55
CUX1-206ENST00000437600 GNAI3P08754 354 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms