RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 GCC1Q96CN9 775 aa26.46■■□□□ 1.83
PTPRF-207ENST00000436724 TOGARAM1Q9Y4F4 1720 aa26.46■■□□□ 1.83
PTPRF-207ENST00000436724 N4BP2Q86UW6 1770 aaPredicted RBP26.46■■□□□ 1.83
PTPRF-207ENST00000436724 MYL6BP14649 208 aa26.46■■□□□ 1.83
PTPRF-207ENST00000436724 PIP4K2AP48426 406 aaPredicted RBP26.46■■□□□ 1.83
PTPRF-207ENST00000436724 AEBP2Q6ZN18 517 aaPredicted RBP26.46■■□□□ 1.83
PTPRF-207ENST00000436724 ANKRD45Q5TZF3 282 aa26.45■■□□□ 1.82
PTPRF-207ENST00000436724 RPAP2Q8IXW5 612 aaPredicted RBP26.45■■□□□ 1.82
PTPRF-207ENST00000436724 USP44Q9H0E7 712 aa26.45■■□□□ 1.82
PTPRF-207ENST00000436724 HYPKQ9NX55 129 aa26.45■■□□□ 1.82
PTPRF-207ENST00000436724 AIMP1Q12904 312 aaKnown RBP26.44■■□□□ 1.82
PTPRF-207ENST00000436724 CHD1LQ86WJ1 897 aa26.44■■□□□ 1.82
PTPRF-207ENST00000436724 GLI3P10071 1580 aa26.44■■□□□ 1.82
PTPRF-207ENST00000436724 SRCIN1Q9C0H9 1055 aa26.44■■□□□ 1.82
PTPRF-207ENST00000436724 NRAPQ86VF7 1730 aa26.43■■□□□ 1.82
PTPRF-207ENST00000436724 BEND3Q5T5X7 828 aa26.43■■□□□ 1.82
PTPRF-207ENST00000436724 MAP3K2Q9Y2U5 619 aa26.43■■□□□ 1.82
PTPRF-207ENST00000436724 GNAI2P04899 355 aa26.43■■□□□ 1.82
PTPRF-207ENST00000436724 PTCD1O75127 700 aaKnown RBP26.41■■□□□ 1.82
PTPRF-207ENST00000436724 GNAI3P08754 354 aa26.41■■□□□ 1.82
PTPRF-207ENST00000436724 SPATA31A1Q5TZJ5 1347 aa26.41■■□□□ 1.82
PTPRF-207ENST00000436724 DCTPP1Q9H773 170 aa26.41■■□□□ 1.82
PTPRF-207ENST00000436724 KSR2Q6VAB6 950 aa26.4■■□□□ 1.82
PTPRF-207ENST00000436724 EXOC5O00471 708 aa26.4■■□□□ 1.82
PTPRF-207ENST00000436724 TMOD3Q9NYL9 352 aa26.4■■□□□ 1.82
PTPRF-207ENST00000436724 LRRFIP2Q9Y608 721 aaKnown RBP26.4■■□□□ 1.82
PTPRF-207ENST00000436724 UBR2Q8IWV8 1755 aa26.39■■□□□ 1.81
PTPRF-207ENST00000436724 KCPQ6ZWJ8 1503 aa26.38■■□□□ 1.81
PTPRF-207ENST00000436724 UBTFL1P0CB47 393 aaPredicted RBP26.38■■□□□ 1.81
PTPRF-207ENST00000436724 LRP10Q7Z4F1 713 aa26.38■■□□□ 1.81
PTPRF-207ENST00000436724 BCL11AQ9H165 835 aa26.38■■□□□ 1.81
PTPRF-207ENST00000436724 WNK3Q9BYP7 1800 aa26.38■■□□□ 1.81
PTPRF-207ENST00000436724 PAPPAQ13219 1627 aa26.38■■□□□ 1.81
PTPRF-207ENST00000436724 NBPF7P0C2Y1 421 aaPredicted RBP26.37■■□□□ 1.81
PTPRF-207ENST00000436724 NPM2Q86SE8 214 aaKnown RBP26.37■■□□□ 1.81
PTPRF-207ENST00000436724 XAGE3Q8WTP9 111 aa26.37■■□□□ 1.81
PTPRF-207ENST00000436724 PIGBQ92521 554 aa26.37■■□□□ 1.81
PTPRF-207ENST00000436724 SLIT2O94813 1529 aa26.37■■□□□ 1.81
PTPRF-207ENST00000436724 COPS6Q7L5N1 327 aa26.37■■□□□ 1.81
PTPRF-207ENST00000436724 CCDC9Q9Y3X0 531 aaKnown RBP26.37■■□□□ 1.81
PTPRF-207ENST00000436724 KAT6BQ8WYB5 2073 aa26.37■■□□□ 1.81
PTPRF-207ENST00000436724 PNMA6EA0A0J9YXQ4 647 aa26.36■■□□□ 1.81
PTPRF-207ENST00000436724 CWF19L2Q2TBE0 894 aaKnown RBP26.36■■□□□ 1.81
PTPRF-207ENST00000436724 CERKQ8TCT0 537 aa26.36■■□□□ 1.81
PTPRF-207ENST00000436724 APBB1O00213 710 aa26.35■■□□□ 1.81
PTPRF-207ENST00000436724 ASAP1Q9ULH1 1129 aa26.35■■□□□ 1.81
PTPRF-207ENST00000436724 TNS2Q63HR2 1409 aa26.35■■□□□ 1.81
PTPRF-207ENST00000436724 DDX58O95786 925 aaKnown RBP26.34■■□□□ 1.81
PTPRF-207ENST00000436724 C8orf37Q96NL8 207 aa26.34■■□□□ 1.81
PTPRF-207ENST00000436724 SPATA31A5Q5VU36 1347 aa26.34■■□□□ 1.81
PTPRF-207ENST00000436724 SPATA31A7Q8IWB4 1347 aa26.34■■□□□ 1.81
PTPRF-207ENST00000436724 LAMB4A4D0S4 1761 aa26.34■■□□□ 1.81
PTPRF-207ENST00000436724 JCADQ9P266 1359 aa26.34■■□□□ 1.81
PTPRF-207ENST00000436724 ITGB4P16144 1822 aa26.33■■□□□ 1.81
PTPRF-207ENST00000436724 HMMRO75330 724 aa26.33■■□□□ 1.81
PTPRF-207ENST00000436724 RIC3Q7Z5B4 369 aa26.33■■□□□ 1.81
PTPRF-207ENST00000436724 ZBTB47Q9UFB7 747 aaPredicted RBP26.33■■□□□ 1.81
PTPRF-207ENST00000436724 NWD2Q9ULI1 1742 aa26.33■■□□□ 1.81
PTPRF-207ENST00000436724 THRAP3Q9Y2W1 955 aaKnown RBP26.33■■□□□ 1.81
PTPRF-207ENST00000436724 NBPF26B4DH59 902 aa26.31■■□□□ 1.8
PTPRF-207ENST00000436724 ATP8B2P98198 1209 aa26.31■■□□□ 1.8
PTPRF-207ENST00000436724 NBPF14Q5TI25 921 aa26.31■■□□□ 1.8
PTPRF-207ENST00000436724 NBPF10Q6P3W6 841 aaKnown RBP26.31■■□□□ 1.8
PTPRF-207ENST00000436724 NBPF15Q8N660 670 aa26.31■■□□□ 1.8
PTPRF-207ENST00000436724 DDB1Q16531 1140 aa26.31■■□□□ 1.8
PTPRF-207ENST00000436724 SYTL4Q96C24 671 aaPredicted RBP26.31■■□□□ 1.8
PTPRF-207ENST00000436724 NGLY1Q96IV0 654 aa26.31■■□□□ 1.8
PTPRF-207ENST00000436724 A1BGP04217 495 aa26.3■■□□□ 1.8
PTPRF-207ENST00000436724 ATG3Q9NT62 314 aa26.3■■□□□ 1.8
PTPRF-207ENST00000436724 SMARCA5O60264 1052 aaPredicted RBP26.3■■□□□ 1.8
PTPRF-207ENST00000436724 SEC24BO95487 1268 aa26.3■■□□□ 1.8
PTPRF-207ENST00000436724 CDCA7Q9BWT1 371 aaPredicted RBP26.3■■□□□ 1.8
PTPRF-207ENST00000436724 C16orf71Q8IYS4 520 aaPredicted RBP26.29■■□□□ 1.8
PTPRF-207ENST00000436724 LINS1Q8NG48 757 aa26.29■■□□□ 1.8
PTPRF-207ENST00000436724 EXOC6BQ9Y2D4 811 aa26.29■■□□□ 1.8
PTPRF-207ENST00000436724 ALDH1L1O75891 902 aa26.29■■□□□ 1.8
PTPRF-207ENST00000436724 ANKRD13DQ6ZTN6 518 aa26.29■■□□□ 1.8
PTPRF-207ENST00000436724 UNC5CLQ8IV45 518 aa26.29■■□□□ 1.8
PTPRF-207ENST00000436724 IGKV5-2P06315 115 aa26.28■■□□□ 1.8
PTPRF-207ENST00000436724 C9orf78Q9NZ63 289 aaPredicted RBP26.28■■□□□ 1.8
PTPRF-207ENST00000436724 BCL9O00512 1426 aa26.28■■□□□ 1.8
PTPRF-207ENST00000436724 BCL9LQ86UU0 1499 aa26.26■■□□□ 1.79
PTPRF-207ENST00000436724 PRIM1P49642 420 aaKnown RBP26.26■■□□□ 1.79
PTPRF-207ENST00000436724 MYD88Q99836 296 aa26.26■■□□□ 1.79
PTPRF-207ENST00000436724 PPP1R42Q7Z4L9 355 aa26.26■■□□□ 1.79
PTPRF-207ENST00000436724 OTUD7AQ8TE49 926 aaPredicted RBP26.26■■□□□ 1.79
PTPRF-207ENST00000436724 RBM42Q9BTD8 480 aaKnown RBP26.26■■□□□ 1.79
PTPRF-207ENST00000436724 MARCH10Q8NA82 808 aaPredicted RBP26.25■■□□□ 1.79
PTPRF-207ENST00000436724 METTL22Q9BUU2 404 aaPredicted RBP26.25■■□□□ 1.79
PTPRF-207ENST00000436724 LRP6O75581 1613 aa26.25■■□□□ 1.79
PTPRF-207ENST00000436724 BARGINQ6ZT62 677 aa26.24■■□□□ 1.79
PTPRF-207ENST00000436724 DOT1LQ8TEK3 1739 aa26.24■■□□□ 1.79
PTPRF-207ENST00000436724 ERBB4Q15303 1308 aa26.24■■□□□ 1.79
PTPRF-207ENST00000436724 NEXNQ0ZGT2 675 aa26.23■■□□□ 1.79
PTPRF-207ENST00000436724 FAM98CQ17RN3 349 aaKnown RBP26.23■■□□□ 1.79
PTPRF-207ENST00000436724 DNAJC10Q8IXB1 793 aa26.23■■□□□ 1.79
PTPRF-207ENST00000436724 A0A0G2JS52 829 aa26.23■■□□□ 1.79
PTPRF-207ENST00000436724 NEURL1BA8MQ27 555 aa26.23■■□□□ 1.79
PTPRF-207ENST00000436724 GRM8O00222 908 aa26.23■■□□□ 1.79
PTPRF-207ENST00000436724 TTLL7Q6ZT98 887 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms