RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 SLC27A3Q5K4L6 730 aa9.81□□□□□ -0.84
USP54-206ENST00000433394 ASB16Q96NS5 453 aa9.81□□□□□ -0.84
USP54-206ENST00000433394 PKD2L1Q9P0L9 805 aa9.81□□□□□ -0.84
USP54-206ENST00000433394 STIM2Q9P246 746 aa9.81□□□□□ -0.84
USP54-206ENST00000433394 BRD2P25440 801 aaKnown RBP9.8□□□□□ -0.84
USP54-206ENST00000433394 TEAD4Q15561 434 aa9.8□□□□□ -0.84
USP54-206ENST00000433394 NOM1Q5C9Z4 860 aaKnown RBP9.8□□□□□ -0.84
USP54-206ENST00000433394 CAPN12Q6ZSI9 719 aa9.8□□□□□ -0.84
USP54-206ENST00000433394 ZNF428Q96B54 188 aa9.8□□□□□ -0.84
USP54-206ENST00000433394 NGLY1Q96IV0 654 aa9.8□□□□□ -0.84
USP54-206ENST00000433394 ITGAEP38570 1179 aa9.79□□□□□ -0.84
USP54-206ENST00000433394 FGD1P98174 961 aa9.79□□□□□ -0.84
USP54-206ENST00000433394 HIF1AQ16665 826 aa9.79□□□□□ -0.84
USP54-206ENST00000433394 CITED4Q96RK1 184 aa9.79□□□□□ -0.84
USP54-206ENST00000433394 TSEN34Q9BSV6 310 aaKnown RBP9.79□□□□□ -0.84
USP54-206ENST00000433394 NPR3P17342 541 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 MPSTP25325 297 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 GPC1P35052 558 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 NOS2P35228 1153 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 TTC16Q8NEE8 873 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 RHBDD1Q8TEB9 315 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 GIPC2Q8TF65 315 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 MYO19Q96H55 970 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 AGBL1Q96MI9 1066 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 ZFAND3Q9H8U3 227 aa9.78□□□□□ -0.84
USP54-206ENST00000433394 J3QL48 77 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 TNFRSF10AO00220 468 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 TIMP2P16035 220 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 PCSK2P16519 638 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 HIRAP54198 1017 aaPredicted RBP9.77□□□□□ -0.85
USP54-206ENST00000433394 ARHGAP4P98171 946 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 PDE3BQ13370 1112 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 COL19A1Q14993 1142 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 RTN1Q16799 776 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 NBPF1Q3BBV0 1214 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 PPARGC1BQ86YN6 1023 aaKnown RBP9.77□□□□□ -0.85
USP54-206ENST00000433394 RGL4Q8IZJ4 473 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 L3MBTL2Q969R5 705 aa9.77□□□□□ -0.85
USP54-206ENST00000433394 ZNF395Q9H8N7 513 aaPredicted RBP9.77□□□□□ -0.85
USP54-206ENST00000433394 COX20Q5RI15 118 aa9.76□□□□□ -0.85
USP54-206ENST00000433394 IQSEC3Q9UPP2 1182 aaPredicted RBP9.76□□□□□ -0.85
USP54-206ENST00000433394 GDF9O60383 454 aa9.75□□□□□ -0.85
USP54-206ENST00000433394 EIF1AXP47813 144 aaKnown RBP9.75□□□□□ -0.85
USP54-206ENST00000433394 C11orf91Q3C1V1 193 aa9.75□□□□□ -0.85
USP54-206ENST00000433394 ALDH16A1Q8IZ83 802 aa9.75□□□□□ -0.85
USP54-206ENST00000433394 SAP130Q9H0E3 1048 aa9.75□□□□□ -0.85
USP54-206ENST00000433394 FAM13BQ9NYF5 915 aa9.75□□□□□ -0.85
USP54-206ENST00000433394 HRH3Q9Y5N1 445 aa9.75□□□□□ -0.85
USP54-206ENST00000433394 EML1O00423 815 aa9.74□□□□□ -0.85
USP54-206ENST00000433394 USP5P45974 858 aa9.74□□□□□ -0.85
USP54-206ENST00000433394 EAPPQ56P03 285 aaPredicted RBP9.74□□□□□ -0.85
USP54-206ENST00000433394 NPAS4Q8IUM7 802 aa9.74□□□□□ -0.85
USP54-206ENST00000433394 MEIOBQ8N635 442 aa9.74□□□□□ -0.85
USP54-206ENST00000433394 DMRTB1Q96MA1 342 aa9.74□□□□□ -0.85
USP54-206ENST00000433394 KLF16Q9BXK1 252 aaPredicted RBP9.74□□□□□ -0.85
USP54-206ENST00000433394 RBCK1Q9BYM8 510 aa9.74□□□□□ -0.85
USP54-206ENST00000433394 FHDC1Q9C0D6 1143 aaPredicted RBP9.74□□□□□ -0.85
USP54-206ENST00000433394 QTRT2Q9H974 415 aaKnown RBP9.74□□□□□ -0.85
USP54-206ENST00000433394 POLMQ9NP87 494 aaPredicted RBP9.74□□□□□ -0.85
USP54-206ENST00000433394 TOR4AQ9NXH8 423 aa9.74□□□□□ -0.85
USP54-206ENST00000433394 HCN4Q9Y3Q4 1203 aa9.74□□□□□ -0.85
USP54-206ENST00000433394 TATP17735 454 aaPredicted RBP9.73□□□□□ -0.85
USP54-206ENST00000433394 PRR20EP86478 221 aa9.73□□□□□ -0.85
USP54-206ENST00000433394 PRR20CP86479 221 aa9.73□□□□□ -0.85
USP54-206ENST00000433394 PRR20DP86480 221 aa9.73□□□□□ -0.85
USP54-206ENST00000433394 PRR20BP86481 221 aa9.73□□□□□ -0.85
USP54-206ENST00000433394 PRR20AP86496 221 aa9.73□□□□□ -0.85
USP54-206ENST00000433394 C1orf53Q5VUE5 145 aa9.73□□□□□ -0.85
USP54-206ENST00000433394 PHACTR1Q9C0D0 580 aa9.73□□□□□ -0.85
USP54-206ENST00000433394 CAPN5O15484 640 aaPredicted RBP9.72□□□□□ -0.85
USP54-206ENST00000433394 ZNF16P17020 682 aaPredicted RBP9.72□□□□□ -0.85
USP54-206ENST00000433394 SMPD1P17405 629 aa9.72□□□□□ -0.85
USP54-206ENST00000433394 DGKZQ13574 1117 aa9.72□□□□□ -0.85
USP54-206ENST00000433394 KDF1Q8NAX2 398 aaPredicted RBP9.72□□□□□ -0.85
USP54-206ENST00000433394 AIDAQ96BJ3 306 aa9.72□□□□□ -0.85
USP54-206ENST00000433394 NEUROD4Q9HD90 331 aa9.72□□□□□ -0.85
USP54-206ENST00000433394 RPLP1P05386 114 aaKnown RBP9.71□□□□□ -0.86
USP54-206ENST00000433394 PLA2G4AP47712 749 aa9.71□□□□□ -0.86
USP54-206ENST00000433394 POTEAQ6S8J7 498 aa9.71□□□□□ -0.86
USP54-206ENST00000433394 MRRFQ96E11 262 aaKnown RBP9.71□□□□□ -0.86
USP54-206ENST00000433394 IFT43Q96FT9 208 aa9.71□□□□□ -0.86
USP54-206ENST00000433394 PARP3Q9Y6F1 533 aa9.71□□□□□ -0.86
USP54-206ENST00000433394 USP3Q9Y6I4 520 aa9.71□□□□□ -0.86
USP54-206ENST00000433394 RNF144AP50876 292 aaPredicted RBP9.7□□□□□ -0.86
USP54-206ENST00000433394 ATP2B2Q01814 1243 aa9.7□□□□□ -0.86
USP54-206ENST00000433394 ECM1Q16610 540 aa9.7□□□□□ -0.86
USP54-206ENST00000433394 Q6ZNB5 142 aa9.7□□□□□ -0.86
USP54-206ENST00000433394 LINC00528Q8N1L1 170 aa9.7□□□□□ -0.86
USP54-206ENST00000433394 RHPN1Q8TCX5 695 aa9.7□□□□□ -0.86
USP54-206ENST00000433394 NEFLP07196 543 aa9.69□□□□□ -0.86
USP54-206ENST00000433394 BMP2P12643 396 aa9.69□□□□□ -0.86
USP54-206ENST00000433394 PLCB3Q01970 1234 aa9.69□□□□□ -0.86
USP54-206ENST00000433394 SCARF1Q14162 830 aa9.69□□□□□ -0.86
USP54-206ENST00000433394 ZDHHC1Q8WTX9 485 aa9.69□□□□□ -0.86
USP54-206ENST00000433394 INSM2Q96T92 566 aaPredicted RBP9.69□□□□□ -0.86
USP54-206ENST00000433394 ANKIB1Q9P2G1 1089 aa9.69□□□□□ -0.86
USP54-206ENST00000433394 GPC6Q9Y625 555 aaPredicted RBP9.69□□□□□ -0.86
USP54-206ENST00000433394 TNFRSF10BO14763 440 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 SPINT1O43278 529 aa9.68□□□□□ -0.86
USP54-206ENST00000433394 MZF1P28698 734 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms