RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 ZPR1O75312 459 aa22.92■■□□□ 1.26
TRIM39-209ENST00000428728 PRKAR2BP31323 418 aa22.92■■□□□ 1.26
TRIM39-209ENST00000428728 DLEC1Q9Y238 1755 aa22.91■■□□□ 1.26
TRIM39-209ENST00000428728 DLG5Q8TDM6 1919 aa22.91■■□□□ 1.26
TRIM39-209ENST00000428728 USPL1Q5W0Q7 1092 aa22.91■■□□□ 1.26
TRIM39-209ENST00000428728 IL17REQ8NFR9 667 aa22.91■■□□□ 1.26
TRIM39-209ENST00000428728 PPP2R1AP30153 589 aa22.9■■□□□ 1.26
TRIM39-209ENST00000428728 VSIG10Q8N0Z9 540 aa22.9■■□□□ 1.26
TRIM39-209ENST00000428728 RSPH6AQ9H0K4 717 aa22.9■■□□□ 1.26
TRIM39-209ENST00000428728 GPBP1L1Q9HC44 474 aaPredicted RBP22.9■■□□□ 1.26
TRIM39-209ENST00000428728 FCHSD2O94868 740 aa22.89■■□□□ 1.25
TRIM39-209ENST00000428728 CANXP27824 592 aaKnown RBP22.89■■□□□ 1.25
TRIM39-209ENST00000428728 PHACTR3Q96KR7 559 aa22.89■■□□□ 1.25
TRIM39-209ENST00000428728 POLRMTO00411 1230 aaKnown RBP22.88■■□□□ 1.25
TRIM39-209ENST00000428728 ZNF496Q96IT1 587 aaPredicted RBP22.88■■□□□ 1.25
TRIM39-209ENST00000428728 NUDCQ9Y266 331 aa22.88■■□□□ 1.25
TRIM39-209ENST00000428728 HEG1Q9ULI3 1381 aa22.88■■□□□ 1.25
TRIM39-209ENST00000428728 U2AF1L5P0DN76 240 aaPredicted RBP22.87■■□□□ 1.25
TRIM39-209ENST00000428728 U2AF1Q01081 240 aaKnown RBP eCLIP22.87■■□□□ 1.25
TRIM39-209ENST00000428728 ZNF790Q6PG37 636 aa22.87■■□□□ 1.25
TRIM39-209ENST00000428728 NARFQ9UHQ1 456 aa22.87■■□□□ 1.25
TRIM39-209ENST00000428728 CEMIPQ8WUJ3 1361 aa22.87■■□□□ 1.25
TRIM39-209ENST00000428728 BCORQ6W2J9 1755 aa22.86■■□□□ 1.25
TRIM39-209ENST00000428728 SBF1O95248 1867 aa22.85■■□□□ 1.25
TRIM39-209ENST00000428728 STARD3NLO95772 234 aa22.85■■□□□ 1.25
TRIM39-209ENST00000428728 KCNA3P22001 575 aa22.85■■□□□ 1.25
TRIM39-209ENST00000428728 TM4SF1P30408 202 aa22.85■■□□□ 1.25
TRIM39-209ENST00000428728 ARHGAP27Q6ZUM4 889 aa22.85■■□□□ 1.25
TRIM39-209ENST00000428728 ANKRD31Q8N7Z5 1873 aa22.85■■□□□ 1.25
TRIM39-209ENST00000428728 CHRNA5P30532 468 aa22.84■■□□□ 1.25
TRIM39-209ENST00000428728 NFIXQ14938 502 aa22.84■■□□□ 1.25
TRIM39-209ENST00000428728 ZNF330Q9Y3S2 320 aaPredicted RBP22.84■■□□□ 1.25
TRIM39-209ENST00000428728 BCL2L12Q9HB09 334 aa22.83■■□□□ 1.25
TRIM39-209ENST00000428728 PIM2Q9P1W9 311 aa22.83■■□□□ 1.25
TRIM39-209ENST00000428728 CACNA1SQ13698 1873 aa22.83■■□□□ 1.24
TRIM39-209ENST00000428728 FMNL2Q96PY5 1086 aa22.82■■□□□ 1.24
TRIM39-209ENST00000428728 CCDC88AQ3V6T2 1871 aa22.81■■□□□ 1.24
TRIM39-209ENST00000428728 BTBD11A6QL63 1104 aa22.81■■□□□ 1.24
TRIM39-209ENST00000428728 LAMB4A4D0S4 1761 aa22.81■■□□□ 1.24
TRIM39-209ENST00000428728 COL11A2P13942 1736 aaPredicted RBP22.8■■□□□ 1.24
TRIM39-209ENST00000428728 KCNQ3O43525 872 aa22.8■■□□□ 1.24
TRIM39-209ENST00000428728 EIF5P55010 431 aaKnown RBP22.8■■□□□ 1.24
TRIM39-209ENST00000428728 DALRD3Q5D0E6 543 aaKnown RBP22.8■■□□□ 1.24
TRIM39-209ENST00000428728 BICDL1Q6ZP65 573 aa22.79■■□□□ 1.24
TRIM39-209ENST00000428728 MCM10Q7L590 875 aa22.79■■□□□ 1.24
TRIM39-209ENST00000428728 RTF1Q92541 710 aaKnown RBP22.79■■□□□ 1.24
TRIM39-209ENST00000428728 TEX13AQ9BXU3 409 aaPredicted RBP22.79■■□□□ 1.24
TRIM39-209ENST00000428728 CARMIL3Q8ND23 1372 aa22.78■■□□□ 1.24
TRIM39-209ENST00000428728 A0A087WZG4 1122 aa22.78■■□□□ 1.24
TRIM39-209ENST00000428728 SERPINB2P05120 415 aa22.78■■□□□ 1.24
TRIM39-209ENST00000428728 KDM3BQ7LBC6 1761 aa22.78■■□□□ 1.24
TRIM39-209ENST00000428728 A1BGP04217 495 aa22.77■■□□□ 1.24
TRIM39-209ENST00000428728 DCTN1Q14203 1278 aa22.77■■□□□ 1.24
TRIM39-209ENST00000428728 TBC1D2BQ9UPU7 963 aa22.76■■□□□ 1.23
TRIM39-209ENST00000428728 TIAM2Q8IVF5 1701 aa22.75■■□□□ 1.23
TRIM39-209ENST00000428728 TBC1D9BQ66K14 1250 aa22.75■■□□□ 1.23
TRIM39-209ENST00000428728 IL6STP40189 918 aaPredicted RBP22.74■■□□□ 1.23
TRIM39-209ENST00000428728 PIP4K2AP48426 406 aaPredicted RBP22.74■■□□□ 1.23
TRIM39-209ENST00000428728 C9orf131Q5VYM1 1079 aa22.74■■□□□ 1.23
TRIM39-209ENST00000428728 PRAMEF22A3QJZ6 481 aa22.73■■□□□ 1.23
TRIM39-209ENST00000428728 KIF3CO14782 793 aa22.73■■□□□ 1.23
TRIM39-209ENST00000428728 NPM2Q86SE8 214 aaKnown RBP22.73■■□□□ 1.23
TRIM39-209ENST00000428728 TNRC6CQ9HCJ0 1690 aaKnown RBP22.72■■□□□ 1.23
TRIM39-209ENST00000428728 ARFGEF2Q9Y6D5 1785 aa22.71■■□□□ 1.23
TRIM39-209ENST00000428728 C2CD5Q86YS7 1000 aa22.71■■□□□ 1.23
TRIM39-209ENST00000428728 RNF181Q9P0P0 153 aa22.71■■□□□ 1.23
TRIM39-209ENST00000428728 USP16Q9Y5T5 823 aa22.71■■□□□ 1.23
TRIM39-209ENST00000428728 NEFMP07197 916 aa22.7■■□□□ 1.22
TRIM39-209ENST00000428728 HTATSF1O43719 755 aaKnown RBP22.69■■□□□ 1.22
TRIM39-209ENST00000428728 CAMTA2O94983 1202 aa22.69■■□□□ 1.22
TRIM39-209ENST00000428728 RASSF7Q02833 373 aa22.69■■□□□ 1.22
TRIM39-209ENST00000428728 DZIP3Q86Y13 1208 aaKnown RBP22.69■■□□□ 1.22
TRIM39-209ENST00000428728 CCDC24Q8N4L8 307 aa22.69■■□□□ 1.22
TRIM39-209ENST00000428728 NMRK2Q9NPI5 230 aa22.69■■□□□ 1.22
TRIM39-209ENST00000428728 SNRPA1P09661 255 aaKnown RBP22.68■■□□□ 1.22
TRIM39-209ENST00000428728 FER1L6Q2WGJ9 1857 aa22.68■■□□□ 1.22
TRIM39-209ENST00000428728 DICER1Q9UPY3 1922 aaKnown RBP22.67■■□□□ 1.22
TRIM39-209ENST00000428728 H0YIN7 160 aa22.67■■□□□ 1.22
TRIM39-209ENST00000428728 PRR5LQ6MZQ0 368 aa22.67■■□□□ 1.22
TRIM39-209ENST00000428728 TTLL6Q8N841 843 aa22.67■■□□□ 1.22
TRIM39-209ENST00000428728 NPHP1O15259 732 aa22.66■■□□□ 1.22
TRIM39-209ENST00000428728 HSPA6P17066 643 aa22.66■■□□□ 1.22
TRIM39-209ENST00000428728 MIS18AQ9NYP9 233 aa22.66■■□□□ 1.22
TRIM39-209ENST00000428728 SLX4Q8IY92 1834 aa22.66■■□□□ 1.22
TRIM39-209ENST00000428728 TAF7Q15545 349 aaPredicted RBP22.65■■□□□ 1.22
TRIM39-209ENST00000428728 CNBD1Q8NA66 436 aa22.65■■□□□ 1.22
TRIM39-209ENST00000428728 SETDB2Q96T68 719 aa22.65■■□□□ 1.22
TRIM39-209ENST00000428728 NUP98P52948 1817 aa22.65■■□□□ 1.22
TRIM39-209ENST00000428728 ZNF622Q969S3 477 aaKnown RBP eCLIP22.64■■□□□ 1.21
TRIM39-209ENST00000428728 PLEKHF1Q96S99 279 aa22.64■■□□□ 1.21
TRIM39-209ENST00000428728 MAPK8IP3Q9UPT6 1336 aa22.63■■□□□ 1.21
TRIM39-209ENST00000428728 BRIP1Q9BX63 1249 aa22.63■■□□□ 1.21
TRIM39-209ENST00000428728 PDE6BP35913 854 aa22.62■■□□□ 1.21
TRIM39-209ENST00000428728 NFE2L2Q16236 605 aa22.62■■□□□ 1.21
TRIM39-209ENST00000428728 THUMPD2Q9BTF0 503 aaKnown RBP22.62■■□□□ 1.21
TRIM39-209ENST00000428728 ZNF219Q9P2Y4 722 aaPredicted RBP22.62■■□□□ 1.21
TRIM39-209ENST00000428728 KDM2BQ8NHM5 1336 aa22.61■■□□□ 1.21
TRIM39-209ENST00000428728 NBPF26B4DH59 902 aa22.61■■□□□ 1.21
TRIM39-209ENST00000428728 ST5P78524 1137 aa22.61■■□□□ 1.21
TRIM39-209ENST00000428728 NBPF10Q6P3W6 841 aaKnown RBP22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms