RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 KIF7Q2M1P5 1343 aa11.03□□□□□ -0.64
VIM-202ENST00000421459 ZNF831Q5JPB2 1677 aa11.02□□□□□ -0.64
VIM-202ENST00000421459 CANXP27824 592 aaKnown RBP11.02□□□□□ -0.65
VIM-202ENST00000421459 PRELPP51888 382 aa11.02□□□□□ -0.65
VIM-202ENST00000421459 KCPQ6ZWJ8 1503 aa11.02□□□□□ -0.65
VIM-202ENST00000421459 PER1O15534 1290 aaPredicted RBP11.01□□□□□ -0.65
VIM-202ENST00000421459 APLP1P51693 650 aa11.01□□□□□ -0.65
VIM-202ENST00000421459 BICDL1Q6ZP65 573 aa11.01□□□□□ -0.65
VIM-202ENST00000421459 CCDC24Q8N4L8 307 aa11.01□□□□□ -0.65
VIM-202ENST00000421459 ADAMTS7Q9UKP4 1686 aa11.01□□□□□ -0.65
VIM-202ENST00000421459 DIAPH1O60610 1272 aaKnown RBP11□□□□□ -0.65
VIM-202ENST00000421459 SERPINB2P05120 415 aa11□□□□□ -0.65
VIM-202ENST00000421459 NARFQ9UHQ1 456 aa11□□□□□ -0.65
VIM-202ENST00000421459 IL17REQ8NFR9 667 aa10.99□□□□□ -0.65
VIM-202ENST00000421459 RBM46Q8TBY0 533 aaKnown RBP10.99□□□□□ -0.65
VIM-202ENST00000421459 COL15A1P39059 1388 aa10.99□□□□□ -0.65
VIM-202ENST00000421459 CARMIL3Q8ND23 1372 aa10.99□□□□□ -0.65
VIM-202ENST00000421459 U2SURPO15042 1029 aaKnown RBP10.98□□□□□ -0.65
VIM-202ENST00000421459 C2CD5Q86YS7 1000 aa10.98□□□□□ -0.65
VIM-202ENST00000421459 C16orf71Q8IYS4 520 aaPredicted RBP10.98□□□□□ -0.65
VIM-202ENST00000421459 ZNF219Q9P2Y4 722 aaPredicted RBP10.98□□□□□ -0.65
VIM-202ENST00000421459 SCN11AQ9UI33 1791 aa10.98□□□□□ -0.65
VIM-202ENST00000421459 KCNQ3O43525 872 aa10.97□□□□□ -0.65
VIM-202ENST00000421459 TBC1D9BQ66K14 1250 aa10.97□□□□□ -0.65
VIM-202ENST00000421459 ZNF496Q96IT1 587 aaPredicted RBP10.97□□□□□ -0.65
VIM-202ENST00000421459 TBC1D2BQ9UPU7 963 aa10.97□□□□□ -0.65
VIM-202ENST00000421459 ZNF330Q9Y3S2 320 aaPredicted RBP10.97□□□□□ -0.65
VIM-202ENST00000421459 MRC1P22897 1456 aa10.97□□□□□ -0.65
VIM-202ENST00000421459 BRCA1P38398 1863 aaKnown RBP10.97□□□□□ -0.65
VIM-202ENST00000421459 PCNTO95613 3336 aa10.97□□□□□ -0.65
VIM-202ENST00000421459 KDM2BQ8NHM5 1336 aa10.96□□□□□ -0.65
VIM-202ENST00000421459 A1BGP04217 495 aa10.96□□□□□ -0.65
VIM-202ENST00000421459 PIP4K2AP48426 406 aaPredicted RBP10.96□□□□□ -0.65
VIM-202ENST00000421459 EIF5P55010 431 aaKnown RBP10.96□□□□□ -0.65
VIM-202ENST00000421459 VSIG10Q8N0Z9 540 aa10.96□□□□□ -0.65
VIM-202ENST00000421459 NFKBIEO00221 500 aa10.95□□□□□ -0.66
VIM-202ENST00000421459 ZNF790Q6PG37 636 aa10.95□□□□□ -0.66
VIM-202ENST00000421459 TTC5Q8N0Z6 440 aa10.95□□□□□ -0.66
VIM-202ENST00000421459 TTLL6Q8N841 843 aa10.95□□□□□ -0.66
VIM-202ENST00000421459 PHACTR3Q96KR7 559 aa10.95□□□□□ -0.66
VIM-202ENST00000421459 PRAMEF22A3QJZ6 481 aa10.94□□□□□ -0.66
VIM-202ENST00000421459 H0YIN7 160 aa10.94□□□□□ -0.66
VIM-202ENST00000421459 STARD3NLO95772 234 aa10.94□□□□□ -0.66
VIM-202ENST00000421459 LMNB1P20700 586 aa10.94□□□□□ -0.66
VIM-202ENST00000421459 TEFQ10587 303 aa10.94□□□□□ -0.66
VIM-202ENST00000421459 FSTL1Q12841 308 aa10.94□□□□□ -0.66
VIM-202ENST00000421459 ZNF622Q969S3 477 aaKnown RBP eCLIP10.94□□□□□ -0.66
VIM-202ENST00000421459 KLRG1Q96E93 195 aa10.94□□□□□ -0.66
VIM-202ENST00000421459 COL3A1P02461 1466 aaPredicted RBP10.93□□□□□ -0.66
VIM-202ENST00000421459 ARFGEF1Q9Y6D6 1849 aa10.93□□□□□ -0.66
VIM-202ENST00000421459 HEG1Q9ULI3 1381 aa10.93□□□□□ -0.66
VIM-202ENST00000421459 GLTPD2A6NH11 291 aa10.93□□□□□ -0.66
VIM-202ENST00000421459 GNAT3A8MTJ3 354 aa10.93□□□□□ -0.66
VIM-202ENST00000421459 POTECB2RU33 542 aa10.93□□□□□ -0.66
VIM-202ENST00000421459 C21orf2O43822 256 aa10.93□□□□□ -0.66
VIM-202ENST00000421459 COL13A1Q5TAT6 717 aaPredicted RBP10.93□□□□□ -0.66
VIM-202ENST00000421459 PRR5LQ6MZQ0 368 aa10.93□□□□□ -0.66
VIM-202ENST00000421459 USP16Q9Y5T5 823 aa10.92□□□□□ -0.66
VIM-202ENST00000421459 AFDNP55196 1824 aaKnown RBP10.92□□□□□ -0.66
VIM-202ENST00000421459 A0A087WZG4 1122 aa10.91□□□□□ -0.66
VIM-202ENST00000421459 BTBD11A6QL63 1104 aa10.91□□□□□ -0.66
VIM-202ENST00000421459 CAMTA2O94983 1202 aa10.91□□□□□ -0.66
VIM-202ENST00000421459 VEGFAP15692 232 aaPredicted RBP10.91□□□□□ -0.66
VIM-202ENST00000421459 PRKAR2BP31323 418 aa10.91□□□□□ -0.66
VIM-202ENST00000421459 JMYQ8N9B5 988 aa10.91□□□□□ -0.66
VIM-202ENST00000421459 SMC1BQ8NDV3 1235 aa10.91□□□□□ -0.66
VIM-202ENST00000421459 GAS2L2Q8NHY3 880 aa10.91□□□□□ -0.66
VIM-202ENST00000421459 NRXN2Q9P2S2 1712 aa10.91□□□□□ -0.66
VIM-202ENST00000421459 WDR90Q96KV7 1748 aa10.9□□□□□ -0.66
VIM-202ENST00000421459 IL6STP40189 918 aaPredicted RBP10.9□□□□□ -0.66
VIM-202ENST00000421459 DCTN1Q14203 1278 aa10.9□□□□□ -0.66
VIM-202ENST00000421459 MCM10Q7L590 875 aa10.9□□□□□ -0.66
VIM-202ENST00000421459 FMNL2Q96PY5 1086 aa10.9□□□□□ -0.66
VIM-202ENST00000421459 BRIP1Q9BX63 1249 aa10.9□□□□□ -0.66
VIM-202ENST00000421459 RSPH6AQ9H0K4 717 aa10.9□□□□□ -0.66
VIM-202ENST00000421459 CAPN15O75808 1086 aa10.89□□□□□ -0.67
VIM-202ENST00000421459 POTEIP0CG38 1075 aa10.89□□□□□ -0.67
VIM-202ENST00000421459 POTEJP0CG39 1038 aa10.89□□□□□ -0.67
VIM-202ENST00000421459 PDE6BP35913 854 aa10.89□□□□□ -0.67
VIM-202ENST00000421459 ERFEQ4G0M1 354 aa10.89□□□□□ -0.67
VIM-202ENST00000421459 DZIP3Q86Y13 1208 aaKnown RBP10.89□□□□□ -0.67
VIM-202ENST00000421459 SETDB2Q96T68 719 aa10.89□□□□□ -0.67
VIM-202ENST00000421459 TEX13AQ9BXU3 409 aaPredicted RBP10.89□□□□□ -0.67
VIM-202ENST00000421459 SBF1O95248 1867 aa10.89□□□□□ -0.67
VIM-202ENST00000421459 CEMIPQ8WUJ3 1361 aa10.89□□□□□ -0.67
VIM-202ENST00000421459 UBR2Q8IWV8 1755 aa10.88□□□□□ -0.67
VIM-202ENST00000421459 FAM177BA6PVY3 158 aa10.88□□□□□ -0.67
VIM-202ENST00000421459 DDNO94850 711 aaPredicted RBP10.88□□□□□ -0.67
VIM-202ENST00000421459 OLFM4Q6UX06 510 aa10.88□□□□□ -0.67
VIM-202ENST00000421459 CNBD1Q8NA66 436 aa10.88□□□□□ -0.67
VIM-202ENST00000421459 MIS18AQ9NYP9 233 aa10.88□□□□□ -0.67
VIM-202ENST00000421459 ZC3H4Q9UPT8 1303 aaKnown RBP10.87□□□□□ -0.67
VIM-202ENST00000421459 NPHP1O15259 732 aa10.87□□□□□ -0.67
VIM-202ENST00000421459 SRGNP10124 158 aa10.87□□□□□ -0.67
VIM-202ENST00000421459 PRPF40BQ6NWY9 871 aaKnown RBP10.87□□□□□ -0.67
VIM-202ENST00000421459 VIRMAQ69YN4 1812 aaKnown RBP10.86□□□□□ -0.67
VIM-202ENST00000421459 TNRC6CQ9HCJ0 1690 aaKnown RBP10.86□□□□□ -0.67
VIM-202ENST00000421459 NBPF26B4DH59 902 aa10.86□□□□□ -0.67
VIM-202ENST00000421459 U2AF1L5P0DN76 240 aaPredicted RBP10.86□□□□□ -0.67
VIM-202ENST00000421459 U2AF1Q01081 240 aaKnown RBP eCLIP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms