RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 C1QTNF8P60827 252 aa33.78■■■■□ 3
VEGFA-208ENST00000417285 DDR1Q08345 913 aa33.78■■■■□ 3
VEGFA-208ENST00000417285 A0A087WZG4 1122 aa33.77■■■■□ 3
VEGFA-208ENST00000417285 RTF1Q92541 710 aaKnown RBP33.77■■■■□ 3
VEGFA-208ENST00000417285 FMNL2Q96PY5 1086 aa33.77■■■■□ 3
VEGFA-208ENST00000417285 BCS1LQ9Y276 419 aa33.77■■■■□ 3
VEGFA-208ENST00000417285 COL15A1P39059 1388 aa33.76■■■■□ 3
VEGFA-208ENST00000417285 HEG1Q9ULI3 1381 aa33.76■■■■□ 3
VEGFA-208ENST00000417285 CANXP27824 592 aaKnown RBP33.76■■■□□ 2.99
VEGFA-208ENST00000417285 KIF13BQ9NQT8 1826 aa33.76■■■□□ 2.99
VEGFA-208ENST00000417285 BTBD11A6QL63 1104 aa33.75■■■□□ 2.99
VEGFA-208ENST00000417285 POLRMTO00411 1230 aaKnown RBP33.75■■■□□ 2.99
VEGFA-208ENST00000417285 HTATSF1O43719 755 aaKnown RBP33.75■■■□□ 2.99
VEGFA-208ENST00000417285 EIF5P55010 431 aaKnown RBP33.74■■■□□ 2.99
VEGFA-208ENST00000417285 VIRMAQ69YN4 1812 aaKnown RBP33.74■■■□□ 2.99
VEGFA-208ENST00000417285 KCNA3P22001 575 aa33.73■■■□□ 2.99
VEGFA-208ENST00000417285 PIM2Q9P1W9 311 aa33.73■■■□□ 2.99
VEGFA-208ENST00000417285 ATP10DQ9P241 1426 aa33.71■■■□□ 2.99
VEGFA-208ENST00000417285 NEFMP07197 916 aa33.7■■■□□ 2.99
VEGFA-208ENST00000417285 NFIXQ14938 502 aa33.7■■■□□ 2.99
VEGFA-208ENST00000417285 GPBP1L1Q9HC44 474 aaPredicted RBP33.69■■■□□ 2.98
VEGFA-208ENST00000417285 UBR2Q8IWV8 1755 aa33.69■■■□□ 2.98
VEGFA-208ENST00000417285 IL6STP40189 918 aaPredicted RBP33.68■■■□□ 2.98
VEGFA-208ENST00000417285 ARHGAP27Q6ZUM4 889 aa33.68■■■□□ 2.98
VEGFA-208ENST00000417285 NPM2Q86SE8 214 aaKnown RBP33.68■■■□□ 2.98
VEGFA-208ENST00000417285 BCL2L12Q9HB09 334 aa33.68■■■□□ 2.98
VEGFA-208ENST00000417285 ADCY9O60503 1353 aa33.68■■■□□ 2.98
VEGFA-208ENST00000417285 DALRD3Q5D0E6 543 aaKnown RBP33.67■■■□□ 2.98
VEGFA-208ENST00000417285 MCM10Q7L590 875 aa33.67■■■□□ 2.98
VEGFA-208ENST00000417285 KCNQ3O43525 872 aa33.65■■■□□ 2.98
VEGFA-208ENST00000417285 SERPINB2P05120 415 aa33.65■■■□□ 2.98
VEGFA-208ENST00000417285 PNNQ9H307 717 aaKnown RBP33.64■■■□□ 2.98
VEGFA-208ENST00000417285 N4BP2Q86UW6 1770 aaPredicted RBP33.64■■■□□ 2.98
VEGFA-208ENST00000417285 KIAA1551Q9HCM1 1747 aa33.64■■■□□ 2.98
VEGFA-208ENST00000417285 A1BGP04217 495 aa33.62■■■□□ 2.97
VEGFA-208ENST00000417285 SNRPA1P09661 255 aaKnown RBP33.61■■■□□ 2.97
VEGFA-208ENST00000417285 CHRNA5P30532 468 aa33.61■■■□□ 2.97
VEGFA-208ENST00000417285 TAF7Q15545 349 aaPredicted RBP33.61■■■□□ 2.97
VEGFA-208ENST00000417285 SIPA1L3O60292 1781 aaPredicted RBP33.61■■■□□ 2.97
VEGFA-208ENST00000417285 TBC1D2BQ9UPU7 963 aa33.6■■■□□ 2.97
VEGFA-208ENST00000417285 ZNF330Q9Y3S2 320 aaPredicted RBP33.6■■■□□ 2.97
VEGFA-208ENST00000417285 DCTN1Q14203 1278 aa33.59■■■□□ 2.97
VEGFA-208ENST00000417285 RALBP1Q15311 655 aa33.59■■■□□ 2.97
VEGFA-208ENST00000417285 ZNF526Q8TF50 670 aaPredicted RBP33.58■■■□□ 2.97
VEGFA-208ENST00000417285 USP16Q9Y5T5 823 aa33.58■■■□□ 2.97
VEGFA-208ENST00000417285 SENP3-EIF4A1A0A087X0R7 540 aa33.57■■■□□ 2.96
VEGFA-208ENST00000417285 BICDL1Q6ZP65 573 aa33.57■■■□□ 2.96
VEGFA-208ENST00000417285 PLEKHF1Q96S99 279 aa33.56■■■□□ 2.96
VEGFA-208ENST00000417285 DDX10Q13206 875 aaKnown RBP33.54■■■□□ 2.96
VEGFA-208ENST00000417285 TBC1D9BQ66K14 1250 aa33.54■■■□□ 2.96
VEGFA-208ENST00000417285 PNISRQ8TF01 805 aaKnown RBP33.54■■■□□ 2.96
VEGFA-208ENST00000417285 PDZRN3Q9UPQ7 1066 aa33.53■■■□□ 2.96
VEGFA-208ENST00000417285 H0YIN7 160 aa33.52■■■□□ 2.96
VEGFA-208ENST00000417285 NFE2L2Q16236 605 aa33.52■■■□□ 2.96
VEGFA-208ENST00000417285 SETDB2Q96T68 719 aa33.52■■■□□ 2.96
VEGFA-208ENST00000417285 CAMTA2O94983 1202 aa33.51■■■□□ 2.95
VEGFA-208ENST00000417285 DZIP3Q86Y13 1208 aaKnown RBP33.51■■■□□ 2.95
VEGFA-208ENST00000417285 C2CD5Q86YS7 1000 aa33.5■■■□□ 2.95
VEGFA-208ENST00000417285 BRIP1Q9BX63 1249 aa33.5■■■□□ 2.95
VEGFA-208ENST00000417285 BRCA1P38398 1863 aaKnown RBP33.5■■■□□ 2.95
VEGFA-208ENST00000417285 PRAMEF22A3QJZ6 481 aa33.49■■■□□ 2.95
VEGFA-208ENST00000417285 C9orf131Q5VYM1 1079 aa33.49■■■□□ 2.95
VEGFA-208ENST00000417285 CLEC4GQ6UXB4 293 aa33.49■■■□□ 2.95
VEGFA-208ENST00000417285 TTLL6Q8N841 843 aa33.49■■■□□ 2.95
VEGFA-208ENST00000417285 MAPK8IP3Q9UPT6 1336 aa33.49■■■□□ 2.95
VEGFA-208ENST00000417285 CARMIL3Q8ND23 1372 aa33.48■■■□□ 2.95
VEGFA-208ENST00000417285 PDE6BP35913 854 aa33.48■■■□□ 2.95
VEGFA-208ENST00000417285 MIS18AQ9NYP9 233 aa33.47■■■□□ 2.95
VEGFA-208ENST00000417285 NRXN2Q9P2S2 1712 aa33.47■■■□□ 2.95
VEGFA-208ENST00000417285 ARFGEF1Q9Y6D6 1849 aa33.45■■■□□ 2.95
VEGFA-208ENST00000417285 RGL2O15211 777 aa33.45■■■□□ 2.95
VEGFA-208ENST00000417285 ZNF652Q9Y2D9 606 aa33.45■■■□□ 2.95
VEGFA-208ENST00000417285 AFDNP55196 1824 aaKnown RBP33.44■■■□□ 2.94
VEGFA-208ENST00000417285 PRR5LQ6MZQ0 368 aa33.44■■■□□ 2.94
VEGFA-208ENST00000417285 PIP4K2AP48426 406 aaPredicted RBP33.43■■■□□ 2.94
VEGFA-208ENST00000417285 NBPF26B4DH59 902 aa33.42■■■□□ 2.94
VEGFA-208ENST00000417285 KIF3CO14782 793 aa33.42■■■□□ 2.94
VEGFA-208ENST00000417285 NPHP1O15259 732 aa33.42■■■□□ 2.94
VEGFA-208ENST00000417285 NBPF10Q6P3W6 841 aaKnown RBP33.42■■■□□ 2.94
VEGFA-208ENST00000417285 NBPF15Q8N660 670 aa33.42■■■□□ 2.94
VEGFA-208ENST00000417285 CNBD1Q8NA66 436 aa33.42■■■□□ 2.94
VEGFA-208ENST00000417285 RNF181Q9P0P0 153 aa33.41■■■□□ 2.94
VEGFA-208ENST00000417285 MYBBP1AQ9BQG0 1328 aaKnown RBP33.4■■■□□ 2.94
VEGFA-208ENST00000417285 ST5P78524 1137 aa33.39■■■□□ 2.94
VEGFA-208ENST00000417285 EIF4A1P60842 406 aaKnown RBP33.38■■■□□ 2.93
VEGFA-208ENST00000417285 ZNF622Q969S3 477 aaKnown RBP eCLIP33.38■■■□□ 2.933e-13■□□□□ 10.7
VEGFA-208ENST00000417285 SCN7AQ01118 1682 aa33.37■■■□□ 2.93
VEGFA-208ENST00000417285 RIPK4P57078 832 aa33.36■■■□□ 2.93
VEGFA-208ENST00000417285 NBPF5PQ86XG9 351 aaPredicted RBP33.36■■■□□ 2.93
VEGFA-208ENST00000417285 THUMPD2Q9BTF0 503 aaKnown RBP33.36■■■□□ 2.93
VEGFA-208ENST00000417285 CEP350Q5VT06 3117 aa33.36■■■□□ 2.93
VEGFA-208ENST00000417285 LMNB1P20700 586 aa33.35■■■□□ 2.93
VEGFA-208ENST00000417285 CCDC24Q8N4L8 307 aa33.35■■■□□ 2.93
VEGFA-208ENST00000417285 KDM2BQ8NHM5 1336 aa33.34■■■□□ 2.93
VEGFA-208ENST00000417285 TOMM70O94826 608 aa33.34■■■□□ 2.93
VEGFA-208ENST00000417285 TPTE2Q6XPS3 522 aa33.34■■■□□ 2.93
VEGFA-208ENST00000417285 ZC3H4Q9UPT8 1303 aaKnown RBP33.33■■■□□ 2.93
VEGFA-208ENST00000417285 LMOD3Q0VAK6 560 aa33.33■■■□□ 2.93
VEGFA-208ENST00000417285 CNKSR1Q969H4 720 aa33.33■■■□□ 2.93
VEGFA-208ENST00000417285 BABAM1Q9NWV8 329 aa33.33■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms