RNA–Protein interactions for RNA: ENST00000416778.5

CPNE1-210, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-210ENST00000416778 MCM10Q7L590 875 aa23.83■■□□□ 1.41
CPNE1-210ENST00000416778 HEG1Q9ULI3 1381 aa23.82■■□□□ 1.4
CPNE1-210ENST00000416778 EIF5P55010 431 aaKnown RBP23.82■■□□□ 1.4
CPNE1-210ENST00000416778 RTF1Q92541 710 aaKnown RBP23.82■■□□□ 1.4
CPNE1-210ENST00000416778 FMNL2Q96PY5 1086 aa23.82■■□□□ 1.4
CPNE1-210ENST00000416778 BCL2L12Q9HB09 334 aa23.82■■□□□ 1.4
CPNE1-210ENST00000416778 DPEP1P16444 411 aa23.81■■□□□ 1.4
CPNE1-210ENST00000416778 KCNA3P22001 575 aa23.81■■□□□ 1.4
CPNE1-210ENST00000416778 POLRMTO00411 1230 aaKnown RBP23.8■■□□□ 1.4
CPNE1-210ENST00000416778 DDX10Q13206 875 aaKnown RBP23.8■■□□□ 1.4
CPNE1-210ENST00000416778 DCTN1Q14203 1278 aa23.8■■□□□ 1.4
CPNE1-210ENST00000416778 PLEKHF1Q96S99 279 aa23.8■■□□□ 1.4
CPNE1-210ENST00000416778 C10orf71Q711Q0 1435 aa23.79■■□□□ 1.4
CPNE1-210ENST00000416778 VIRMAQ69YN4 1812 aaKnown RBP23.79■■□□□ 1.4
CPNE1-210ENST00000416778 A1BGP04217 495 aa23.78■■□□□ 1.4
CPNE1-210ENST00000416778 NFIXQ14938 502 aa23.78■■□□□ 1.4
CPNE1-210ENST00000416778 RALBP1Q15311 655 aa23.78■■□□□ 1.4
CPNE1-210ENST00000416778 PXDNLA1KZ92 1463 aa23.78■■□□□ 1.4
CPNE1-210ENST00000416778 COL15A1P39059 1388 aa23.78■■□□□ 1.4
CPNE1-210ENST00000416778 USP16Q9Y5T5 823 aa23.77■■□□□ 1.4
CPNE1-210ENST00000416778 A0A087WZG4 1122 aa23.76■■□□□ 1.39
CPNE1-210ENST00000416778 C4AP0C0L4 1744 aa23.76■■□□□ 1.39
CPNE1-210ENST00000416778 TAF7Q15545 349 aaPredicted RBP23.75■■□□□ 1.39
CPNE1-210ENST00000416778 BCS1LQ9Y276 419 aa23.75■■□□□ 1.39
CPNE1-210ENST00000416778 UBR2Q8IWV8 1755 aa23.75■■□□□ 1.39
CPNE1-210ENST00000416778 IL6STP40189 918 aaPredicted RBP23.74■■□□□ 1.39
CPNE1-210ENST00000416778 KIF13BQ9NQT8 1826 aa23.73■■□□□ 1.39
CPNE1-210ENST00000416778 PRAMEF22A3QJZ6 481 aa23.73■■□□□ 1.39
CPNE1-210ENST00000416778 TBC1D2BQ9UPU7 963 aa23.73■■□□□ 1.39
CPNE1-210ENST00000416778 SIPA1L3O60292 1781 aaPredicted RBP23.73■■□□□ 1.39
CPNE1-210ENST00000416778 SERPINB2P05120 415 aa23.72■■□□□ 1.39
CPNE1-210ENST00000416778 NEFMP07197 916 aa23.72■■□□□ 1.39
CPNE1-210ENST00000416778 SNRPA1P09661 255 aaKnown RBP23.72■■□□□ 1.39
CPNE1-210ENST00000416778 PNNQ9H307 717 aaKnown RBP23.72■■□□□ 1.39
CPNE1-210ENST00000416778 MIS18AQ9NYP9 233 aa23.72■■□□□ 1.39
CPNE1-210ENST00000416778 PIM2Q9P1W9 311 aa23.72■■□□□ 1.39
CPNE1-210ENST00000416778 NFE2L2Q16236 605 aa23.71■■□□□ 1.39
CPNE1-210ENST00000416778 CHRNA5P30532 468 aa23.7■■□□□ 1.38
CPNE1-210ENST00000416778 ARHGAP27Q6ZUM4 889 aa23.69■■□□□ 1.38
CPNE1-210ENST00000416778 KIAA1551Q9HCM1 1747 aa23.69■■□□□ 1.38
CPNE1-210ENST00000416778 C1QTNF8P60827 252 aa23.68■■□□□ 1.38
CPNE1-210ENST00000416778 TBC1D9BQ66K14 1250 aa23.68■■□□□ 1.38
CPNE1-210ENST00000416778 BICDL1Q6ZP65 573 aa23.68■■□□□ 1.38
CPNE1-210ENST00000416778 ZNF330Q9Y3S2 320 aaPredicted RBP23.68■■□□□ 1.38
CPNE1-210ENST00000416778 N4BP2Q86UW6 1770 aaPredicted RBP23.68■■□□□ 1.38
CPNE1-210ENST00000416778 DALRD3Q5D0E6 543 aaKnown RBP23.67■■□□□ 1.38
CPNE1-210ENST00000416778 CAMTA2O94983 1202 aa23.66■■□□□ 1.38
CPNE1-210ENST00000416778 PIP4K2AP48426 406 aaPredicted RBP23.66■■□□□ 1.38
CPNE1-210ENST00000416778 ADCY9O60503 1353 aa23.65■■□□□ 1.38
CPNE1-210ENST00000416778 NBPF26B4DH59 902 aa23.65■■□□□ 1.38
CPNE1-210ENST00000416778 NBPF10Q6P3W6 841 aaKnown RBP23.65■■□□□ 1.38
CPNE1-210ENST00000416778 NBPF15Q8N660 670 aa23.65■■□□□ 1.38
CPNE1-210ENST00000416778 PNISRQ8TF01 805 aaKnown RBP23.65■■□□□ 1.38
CPNE1-210ENST00000416778 THUMPD2Q9BTF0 503 aaKnown RBP23.65■■□□□ 1.38
CPNE1-210ENST00000416778 ATP10DQ9P241 1426 aa23.65■■□□□ 1.38
CPNE1-210ENST00000416778 NPM2Q86SE8 214 aaKnown RBP23.64■■□□□ 1.37
CPNE1-210ENST00000416778 MYBBP1AQ9BQG0 1328 aaKnown RBP23.63■■□□□ 1.37
CPNE1-210ENST00000416778 GIGYF1O75420 1035 aaPredicted RBP23.63■■□□□ 1.37
CPNE1-210ENST00000416778 DZIP3Q86Y13 1208 aaKnown RBP23.63■■□□□ 1.37
CPNE1-210ENST00000416778 MAPK8IP3Q9UPT6 1336 aa23.62■■□□□ 1.37
CPNE1-210ENST00000416778 RIPK4P57078 832 aa23.61■■□□□ 1.37
CPNE1-210ENST00000416778 EIF4A1P60842 406 aaKnown RBP23.61■■□□□ 1.37
CPNE1-210ENST00000416778 SETDB2Q96T68 719 aa23.61■■□□□ 1.37
CPNE1-210ENST00000416778 GPBP1L1Q9HC44 474 aaPredicted RBP23.61■■□□□ 1.37
CPNE1-210ENST00000416778 CLEC4GQ6UXB4 293 aa23.6■■□□□ 1.37
CPNE1-210ENST00000416778 H0YIN7 160 aa23.59■■□□□ 1.37
CPNE1-210ENST00000416778 TMPOP42166 694 aaKnown RBP23.59■■□□□ 1.37
CPNE1-210ENST00000416778 C2CD5Q86YS7 1000 aa23.59■■□□□ 1.37
CPNE1-210ENST00000416778 ZNF526Q8TF50 670 aaPredicted RBP23.59■■□□□ 1.37
CPNE1-210ENST00000416778 BRIP1Q9BX63 1249 aa23.59■■□□□ 1.37
CPNE1-210ENST00000416778 PRR5LQ6MZQ0 368 aa23.58■■□□□ 1.37
CPNE1-210ENST00000416778 NRXN2Q9P2S2 1712 aa23.57■■□□□ 1.36
CPNE1-210ENST00000416778 CCDC24Q8N4L8 307 aa23.57■■□□□ 1.36
CPNE1-210ENST00000416778 TTLL6Q8N841 843 aa23.57■■□□□ 1.36
CPNE1-210ENST00000416778 CARMIL3Q8ND23 1372 aa23.56■■□□□ 1.36
CPNE1-210ENST00000416778 C9orf131Q5VYM1 1079 aa23.56■■□□□ 1.36
CPNE1-210ENST00000416778 PRKRIP1Q9H875 184 aaPredicted RBP23.56■■□□□ 1.36
CPNE1-210ENST00000416778 AFDNP55196 1824 aaKnown RBP23.56■■□□□ 1.36
CPNE1-210ENST00000416778 BRCA1P38398 1863 aaKnown RBP23.56■■□□□ 1.36
CPNE1-210ENST00000416778 RGL2O15211 777 aa23.55■■□□□ 1.36
CPNE1-210ENST00000416778 PDE6BP35913 854 aa23.55■■□□□ 1.36
CPNE1-210ENST00000416778 PDZRN3Q9UPQ7 1066 aa23.55■■□□□ 1.36
CPNE1-210ENST00000416778 ADAMTS8Q9UP79 889 aa23.54■■□□□ 1.36
CPNE1-210ENST00000416778 HLFQ16534 295 aa23.53■■□□□ 1.36
CPNE1-210ENST00000416778 CCDC146Q8IYE0 955 aa23.53■■□□□ 1.36
CPNE1-210ENST00000416778 BABAM1Q9NWV8 329 aa23.53■■□□□ 1.36
CPNE1-210ENST00000416778 DLG5Q8TDM6 1919 aa23.53■■□□□ 1.36
CPNE1-210ENST00000416778 RUNDC1Q96C34 613 aa23.52■■□□□ 1.36
CPNE1-210ENST00000416778 TSPYL4Q9UJ04 414 aa23.52■■□□□ 1.36
CPNE1-210ENST00000416778 ZNF652Q9Y2D9 606 aa23.52■■□□□ 1.36
CPNE1-210ENST00000416778 RRP7AQ9Y3A4 280 aaKnown RBP23.52■■□□□ 1.36
CPNE1-210ENST00000416778 KIF3CO14782 793 aa23.51■■□□□ 1.35
CPNE1-210ENST00000416778 NGEFQ8N5V2 710 aa23.51■■□□□ 1.35
CPNE1-210ENST00000416778 CNBD1Q8NA66 436 aa23.51■■□□□ 1.35
CPNE1-210ENST00000416778 ZNF622Q969S3 477 aaKnown RBP eCLIP23.51■■□□□ 1.352e-6■■■□□ 15.2
CPNE1-210ENST00000416778 LMOD3Q0VAK6 560 aa23.5■■□□□ 1.35
CPNE1-210ENST00000416778 NEUROD2Q15784 382 aa23.5■■□□□ 1.35
CPNE1-210ENST00000416778 ERVV-1B6SEH8 477 aa23.49■■□□□ 1.35
CPNE1-210ENST00000416778 WDR43Q15061 677 aaKnown RBP eCLIP23.49■■□□□ 1.35
CPNE1-210ENST00000416778 TPTE2Q6XPS3 522 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms