RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 SPATA32Q96LK8 384 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 SEC63Q9UGP8 760 aaKnown RBP20.31■□□□□ 0.84
PHRF1-202ENST00000413872 TRPM2O94759 1503 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 ZFYVE27Q5T4F4 411 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 RSPH6AQ9H0K4 717 aa20.31■□□□□ 0.84
PHRF1-202ENST00000413872 LDHAL6AQ6ZMR3 332 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 SH2B1Q9NRF2 756 aaPredicted RBP20.3■□□□□ 0.84
PHRF1-202ENST00000413872 ECHDC1Q9NTX5 307 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 ZMYM3Q14202 1370 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 GPTP24298 496 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 RFC4P35249 363 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 PTPRKQ15262 1439 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 TXLNBQ8N3L3 684 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 HSP90AB2PQ58FF8 381 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 EVI5LQ96CN4 794 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 FLT4P35916 1363 aa20.3■□□□□ 0.84
PHRF1-202ENST00000413872 ANKRD13DQ6ZTN6 518 aa20.29■□□□□ 0.84
PHRF1-202ENST00000413872 CTCFLQ8NI51 663 aaPredicted RBP20.29■□□□□ 0.84
PHRF1-202ENST00000413872 MINDY4BA8MYZ0 360 aa20.29■□□□□ 0.84
PHRF1-202ENST00000413872 MPHOSPH10O00566 681 aaKnown RBP20.29■□□□□ 0.84
PHRF1-202ENST00000413872 RUFY1Q96T51 708 aa20.29■□□□□ 0.84
PHRF1-202ENST00000413872 IL27Q8NEV9 243 aa20.29■□□□□ 0.84
PHRF1-202ENST00000413872 PI4KAP2A4QPH2 592 aa20.29■□□□□ 0.84
PHRF1-202ENST00000413872 SPTY2D1Q68D10 685 aaPredicted RBP20.29■□□□□ 0.84
PHRF1-202ENST00000413872 ZNF444Q8N0Y2 327 aaPredicted RBP20.29■□□□□ 0.84
PHRF1-202ENST00000413872 PI4KAP1Q8N8J0 262 aa20.29■□□□□ 0.84
PHRF1-202ENST00000413872 MYO6Q9UM54 1294 aa20.29■□□□□ 0.84
PHRF1-202ENST00000413872 CCDC8Q9H0W5 538 aaPredicted RBP20.28■□□□□ 0.84
PHRF1-202ENST00000413872 ZHX3Q9H4I2 956 aa20.28■□□□□ 0.84
PHRF1-202ENST00000413872 PRPF40BQ6NWY9 871 aaKnown RBP20.28■□□□□ 0.84
PHRF1-202ENST00000413872 ZNF213O14771 459 aa20.27■□□□□ 0.84
PHRF1-202ENST00000413872 SMARCA5O60264 1052 aaPredicted RBP20.27■□□□□ 0.84
PHRF1-202ENST00000413872 C6orf229H3BNL8 230 aa20.27■□□□□ 0.84
PHRF1-202ENST00000413872 TNIP1Q15025 636 aa20.27■□□□□ 0.84
PHRF1-202ENST00000413872 FAM43AQ8N2R8 423 aa20.27■□□□□ 0.84
PHRF1-202ENST00000413872 ST5P78524 1137 aa20.27■□□□□ 0.84
PHRF1-202ENST00000413872 UQCRFS1P1P0C7P4 283 aa20.27■□□□□ 0.83
PHRF1-202ENST00000413872 UBE3BQ7Z3V4 1068 aa20.27■□□□□ 0.83
PHRF1-202ENST00000413872 BCL11BQ9C0K0 894 aaPredicted RBP20.27■□□□□ 0.83
PHRF1-202ENST00000413872 PLEKHH1Q9ULM0 1364 aa20.26■□□□□ 0.83
PHRF1-202ENST00000413872 SERPINC1P01008 464 aa20.26■□□□□ 0.83
PHRF1-202ENST00000413872 CCDC152Q4G0S7 254 aa20.26■□□□□ 0.83
PHRF1-202ENST00000413872 NPATQ14207 1427 aa20.26■□□□□ 0.83
PHRF1-202ENST00000413872 CBFA2T2O43439 604 aa20.26■□□□□ 0.83
PHRF1-202ENST00000413872 ALDH1L1O75891 902 aa20.25■□□□□ 0.83
PHRF1-202ENST00000413872 BAG3O95817 575 aa20.25■□□□□ 0.83
PHRF1-202ENST00000413872 DDB1Q16531 1140 aa20.25■□□□□ 0.83
PHRF1-202ENST00000413872 HMGN5P82970 282 aaKnown RBP20.25■□□□□ 0.83
PHRF1-202ENST00000413872 CEP57L1Q8IYX8 460 aa20.25■□□□□ 0.83
PHRF1-202ENST00000413872 PHAXQ9H814 394 aaKnown RBP20.25■□□□□ 0.83
PHRF1-202ENST00000413872 TNNT3P45378 269 aaPredicted RBP20.25■□□□□ 0.83
PHRF1-202ENST00000413872 PPFIBP1Q86W92 1011 aa20.25■□□□□ 0.83
PHRF1-202ENST00000413872 LRRC59Q96AG4 307 aaKnown RBP20.25■□□□□ 0.83
PHRF1-202ENST00000413872 ZFYVE9O95405 1425 aa20.24■□□□□ 0.83
PHRF1-202ENST00000413872 IL2RBP14784 551 aa20.24■□□□□ 0.83
PHRF1-202ENST00000413872 CAGE1Q8TC20 777 aa20.24■□□□□ 0.83
PHRF1-202ENST00000413872 FAM83GA6ND36 823 aa20.24■□□□□ 0.83
PHRF1-202ENST00000413872 POLR3AO14802 1390 aaPredicted RBP20.24■□□□□ 0.83
PHRF1-202ENST00000413872 BRPF1P55201 1214 aaPredicted RBP20.24■□□□□ 0.83
PHRF1-202ENST00000413872 NBPF6Q5VWK0 638 aa20.24■□□□□ 0.83
PHRF1-202ENST00000413872 NBPF5PQ86XG9 351 aaPredicted RBP20.24■□□□□ 0.83
PHRF1-202ENST00000413872 NBPF4Q96M43 638 aa20.24■□□□□ 0.83
PHRF1-202ENST00000413872 TEX35Q5T0J7 233 aa20.23■□□□□ 0.83
PHRF1-202ENST00000413872 PDCL3Q9H2J4 239 aa20.23■□□□□ 0.83
PHRF1-202ENST00000413872 ATP10AO60312 1499 aa20.23■□□□□ 0.83
PHRF1-202ENST00000413872 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.23■□□□□ 0.831e-6■■■■■ 71
PHRF1-202ENST00000413872 SSBP05455 408 aaKnown RBP eCLIP20.23■□□□□ 0.83
PHRF1-202ENST00000413872 ATP5J2-PTCD1G3V325 749 aa20.23■□□□□ 0.83
PHRF1-202ENST00000413872 ABCC1P33527 1531 aa20.22■□□□□ 0.83
PHRF1-202ENST00000413872 ARHGEF12Q9NZN5 1544 aa20.22■□□□□ 0.83
PHRF1-202ENST00000413872 EIF4A2Q14240 407 aaKnown RBP20.22■□□□□ 0.83
PHRF1-202ENST00000413872 KRI1Q8N9T8 703 aaKnown RBP20.22■□□□□ 0.83
PHRF1-202ENST00000413872 NUP62CLQ9H1M0 184 aa20.22■□□□□ 0.83
PHRF1-202ENST00000413872 SLC12A7Q9Y666 1083 aa20.22■□□□□ 0.83
PHRF1-202ENST00000413872 RANBP6O60518 1105 aaKnown RBP20.21■□□□□ 0.83
PHRF1-202ENST00000413872 ERCC4Q92889 916 aaPredicted RBP20.21■□□□□ 0.83
PHRF1-202ENST00000413872 KIF21AQ7Z4S6 1674 aa20.21■□□□□ 0.83
PHRF1-202ENST00000413872 RAB34Q9BZG1 259 aa20.21■□□□□ 0.83
PHRF1-202ENST00000413872 GSTO1P78417 241 aa20.2■□□□□ 0.83
PHRF1-202ENST00000413872 HSP90B2PQ58FF3 399 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 TANGO6Q9C0B7 1094 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 POLKQ9UBT6 870 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 SOS1Q07889 1333 aaPredicted RBP20.2■□□□□ 0.82
PHRF1-202ENST00000413872 DDX11Q96FC9 970 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 SCAND2PQ9GZW5 306 aaPredicted RBP20.2■□□□□ 0.82
PHRF1-202ENST00000413872 EHMT1Q9H9B1 1298 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 CFAP43Q8NDM7 1665 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 SMTNL1A8MU46 457 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 ATP6V1AP38606 617 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 C20orf194Q5TEA3 1177 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 SETDB2Q96T68 719 aa20.2■□□□□ 0.82
PHRF1-202ENST00000413872 BMP2KLQ5H9B9 411 aa20.19■□□□□ 0.82
PHRF1-202ENST00000413872 CATIPQ7Z7H3 387 aa20.19■□□□□ 0.82
PHRF1-202ENST00000413872 YTHDC2Q9H6S0 1430 aaKnown RBP20.19■□□□□ 0.82
PHRF1-202ENST00000413872 CUL5Q93034 780 aa20.19■□□□□ 0.82
PHRF1-202ENST00000413872 PDE4BQ07343 736 aa20.19■□□□□ 0.82
PHRF1-202ENST00000413872 KSR2Q6VAB6 950 aa20.19■□□□□ 0.82
PHRF1-202ENST00000413872 C8orf76Q96K31 380 aa20.19■□□□□ 0.82
PHRF1-202ENST00000413872 ZFYP08048 801 aaPredicted RBP20.19■□□□□ 0.82
PHRF1-202ENST00000413872 CCDC83Q8IWF9 413 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms