RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 USPL1Q5W0Q7 1092 aa19.71■□□□□ 0.75
CBX3-203ENST00000409747 ZNF790Q6PG37 636 aa19.71■□□□□ 0.75
CBX3-203ENST00000409747 TEX13AQ9BXU3 409 aaPredicted RBP19.71■□□□□ 0.75
CBX3-203ENST00000409747 NARFQ9UHQ1 456 aa19.71■□□□□ 0.75
CBX3-203ENST00000409747 CEMIPQ8WUJ3 1361 aa19.71■□□□□ 0.75
CBX3-203ENST00000409747 U2AF1L5P0DN76 240 aaPredicted RBP19.71■□□□□ 0.75
CBX3-203ENST00000409747 DPEP1P16444 411 aa19.71■□□□□ 0.75
CBX3-203ENST00000409747 U2AF1Q01081 240 aaKnown RBP eCLIP19.71■□□□□ 0.75
CBX3-203ENST00000409747 DDR1Q08345 913 aa19.71■□□□□ 0.75
CBX3-203ENST00000409747 GPBP1L1Q9HC44 474 aaPredicted RBP19.71■□□□□ 0.75
CBX3-203ENST00000409747 HEG1Q9ULI3 1381 aa19.7■□□□□ 0.74
CBX3-203ENST00000409747 POLRMTO00411 1230 aaKnown RBP19.69■□□□□ 0.74
CBX3-203ENST00000409747 TM4SF1P30408 202 aa19.69■□□□□ 0.74
CBX3-203ENST00000409747 PHACTR3Q96KR7 559 aa19.69■□□□□ 0.74
CBX3-203ENST00000409747 A0A087WZG4 1122 aa19.68■□□□□ 0.74
CBX3-203ENST00000409747 FCHSD2O94868 740 aa19.68■□□□□ 0.74
CBX3-203ENST00000409747 ZNF496Q96IT1 587 aaPredicted RBP19.68■□□□□ 0.74
CBX3-203ENST00000409747 FMNL2Q96PY5 1086 aa19.68■□□□□ 0.74
CBX3-203ENST00000409747 ARFGEF1Q9Y6D6 1849 aa19.68■□□□□ 0.74
CBX3-203ENST00000409747 SENP3-EIF4A1A0A087X0R7 540 aa19.68■□□□□ 0.74
CBX3-203ENST00000409747 CANXP27824 592 aaKnown RBP19.68■□□□□ 0.74
CBX3-203ENST00000409747 RTF1Q92541 710 aaKnown RBP19.68■□□□□ 0.74
CBX3-203ENST00000409747 PIM2Q9P1W9 311 aa19.68■□□□□ 0.74
CBX3-203ENST00000409747 BTBD11A6QL63 1104 aa19.66■□□□□ 0.74
CBX3-203ENST00000409747 NRXN2Q9P2S2 1712 aa19.66■□□□□ 0.74
CBX3-203ENST00000409747 KCNA3P22001 575 aa19.65■□□□□ 0.74
CBX3-203ENST00000409747 SCN7AQ01118 1682 aa19.65■□□□□ 0.74
CBX3-203ENST00000409747 EIF5P55010 431 aaKnown RBP19.65■□□□□ 0.74
CBX3-203ENST00000409747 NFIXQ14938 502 aa19.65■□□□□ 0.74
CBX3-203ENST00000409747 DALRD3Q5D0E6 543 aaKnown RBP19.65■□□□□ 0.74
CBX3-203ENST00000409747 ARHGAP27Q6ZUM4 889 aa19.65■□□□□ 0.74
CBX3-203ENST00000409747 NPM2Q86SE8 214 aaKnown RBP19.65■□□□□ 0.74
CBX3-203ENST00000409747 AFDNP55196 1824 aaKnown RBP19.64■□□□□ 0.74
CBX3-203ENST00000409747 NEFMP07197 916 aa19.64■□□□□ 0.73
CBX3-203ENST00000409747 ZNF526Q8TF50 670 aaPredicted RBP19.64■□□□□ 0.73
CBX3-203ENST00000409747 HTATSF1O43719 755 aaKnown RBP19.63■□□□□ 0.73
CBX3-203ENST00000409747 IL6STP40189 918 aaPredicted RBP19.63■□□□□ 0.73
CBX3-203ENST00000409747 BCL2L12Q9HB09 334 aa19.62■□□□□ 0.73
CBX3-203ENST00000409747 SERPINB2P05120 415 aa19.61■□□□□ 0.73
CBX3-203ENST00000409747 ZNF330Q9Y3S2 320 aaPredicted RBP19.61■□□□□ 0.73
CBX3-203ENST00000409747 CHRNA5P30532 468 aa19.6■□□□□ 0.73
CBX3-203ENST00000409747 DLEC1Q9Y238 1755 aa19.6■□□□□ 0.73
CBX3-203ENST00000409747 MCM10Q7L590 875 aa19.59■□□□□ 0.73
CBX3-203ENST00000409747 KCNQ3O43525 872 aa19.58■□□□□ 0.72
CBX3-203ENST00000409747 CARMIL3Q8ND23 1372 aa19.57■□□□□ 0.72
CBX3-203ENST00000409747 SNRPA1P09661 255 aaKnown RBP19.57■□□□□ 0.72
CBX3-203ENST00000409747 BICDL1Q6ZP65 573 aa19.57■□□□□ 0.72
CBX3-203ENST00000409747 A1BGP04217 495 aa19.56■□□□□ 0.72
CBX3-203ENST00000409747 PNNQ9H307 717 aaKnown RBP19.56■□□□□ 0.72
CBX3-203ENST00000409747 TBC1D2BQ9UPU7 963 aa19.56■□□□□ 0.72
CBX3-203ENST00000409747 BCORQ6W2J9 1755 aa19.56■□□□□ 0.72
CBX3-203ENST00000409747 TBC1D9BQ66K14 1250 aa19.56■□□□□ 0.72
CBX3-203ENST00000409747 PDZRN3Q9UPQ7 1066 aa19.56■□□□□ 0.72
CBX3-203ENST00000409747 DCTN1Q14203 1278 aa19.55■□□□□ 0.72
CBX3-203ENST00000409747 C9orf131Q5VYM1 1079 aa19.55■□□□□ 0.72
CBX3-203ENST00000409747 H0YIN7 160 aa19.54■□□□□ 0.72
CBX3-203ENST00000409747 TAF7Q15545 349 aaPredicted RBP19.54■□□□□ 0.72
CBX3-203ENST00000409747 DZIP3Q86Y13 1208 aaKnown RBP19.54■□□□□ 0.72
CBX3-203ENST00000409747 C2CD5Q86YS7 1000 aa19.54■□□□□ 0.72
CBX3-203ENST00000409747 DLG5Q8TDM6 1919 aa19.54■□□□□ 0.72
CBX3-203ENST00000409747 CAMTA2O94983 1202 aa19.54■□□□□ 0.72
CBX3-203ENST00000409747 TTLL6Q8N841 843 aa19.54■□□□□ 0.72
CBX3-203ENST00000409747 PNISRQ8TF01 805 aaKnown RBP19.54■□□□□ 0.72
CBX3-203ENST00000409747 SETDB2Q96T68 719 aa19.54■□□□□ 0.72
CBX3-203ENST00000409747 USP16Q9Y5T5 823 aa19.54■□□□□ 0.72
CBX3-203ENST00000409747 MAPK8IP3Q9UPT6 1336 aa19.53■□□□□ 0.72
CBX3-203ENST00000409747 KIF3CO14782 793 aa19.53■□□□□ 0.72
CBX3-203ENST00000409747 LAMB4A4D0S4 1761 aa19.53■□□□□ 0.72
CBX3-203ENST00000409747 NPHP1O15259 732 aa19.52■□□□□ 0.72
CBX3-203ENST00000409747 PDE6BP35913 854 aa19.52■□□□□ 0.72
CBX3-203ENST00000409747 RALBP1Q15311 655 aa19.52■□□□□ 0.72
CBX3-203ENST00000409747 BRIP1Q9BX63 1249 aa19.52■□□□□ 0.72
CBX3-203ENST00000409747 RNF181Q9P0P0 153 aa19.52■□□□□ 0.72
CBX3-203ENST00000409747 ZNF652Q9Y2D9 606 aa19.52■□□□□ 0.72
CBX3-203ENST00000409747 CEP350Q5VT06 3117 aa19.52■□□□□ 0.72
CBX3-203ENST00000409747 PLEKHF1Q96S99 279 aa19.51■□□□□ 0.71
CBX3-203ENST00000409747 ANKRD31Q8N7Z5 1873 aa19.51■□□□□ 0.71
CBX3-203ENST00000409747 KDM3BQ7LBC6 1761 aa19.51■□□□□ 0.71
CBX3-203ENST00000409747 NFE2L2Q16236 605 aa19.51■□□□□ 0.71
CBX3-203ENST00000409747 PRR5LQ6MZQ0 368 aa19.51■□□□□ 0.71
CBX3-203ENST00000409747 CLEC4GQ6UXB4 293 aa19.51■□□□□ 0.71
CBX3-203ENST00000409747 CNBD1Q8NA66 436 aa19.51■□□□□ 0.71
CBX3-203ENST00000409747 PRAMEF22A3QJZ6 481 aa19.5■□□□□ 0.71
CBX3-203ENST00000409747 RGL2O15211 777 aa19.5■□□□□ 0.71
CBX3-203ENST00000409747 ST5P78524 1137 aa19.5■□□□□ 0.71
CBX3-203ENST00000409747 SBF1O95248 1867 aa19.5■□□□□ 0.71
CBX3-203ENST00000409747 KDM2BQ8NHM5 1336 aa19.5■□□□□ 0.71
CBX3-203ENST00000409747 ZC3H4Q9UPT8 1303 aaKnown RBP19.5■□□□□ 0.71
CBX3-203ENST00000409747 HSPA6P17066 643 aa19.49■□□□□ 0.71
CBX3-203ENST00000409747 PIP4K2AP48426 406 aaPredicted RBP19.48■□□□□ 0.71
CBX3-203ENST00000409747 TOMM70O94826 608 aa19.48■□□□□ 0.71
CBX3-203ENST00000409747 COL11A2P13942 1736 aaPredicted RBP19.48■□□□□ 0.71
CBX3-203ENST00000409747 LMNB1P20700 586 aa19.47■□□□□ 0.71
CBX3-203ENST00000409747 ZNF622Q969S3 477 aaKnown RBP eCLIP19.47■□□□□ 0.712e-21■■□□□ 12.9
CBX3-203ENST00000409747 TNRC6CQ9HCJ0 1690 aaKnown RBP19.47■□□□□ 0.71
CBX3-203ENST00000409747 RASSF7Q02833 373 aa19.46■□□□□ 0.71
CBX3-203ENST00000409747 NMRK2Q9NPI5 230 aa19.46■□□□□ 0.71
CBX3-203ENST00000409747 MIS18AQ9NYP9 233 aa19.46■□□□□ 0.71
CBX3-203ENST00000409747 NBPF5PQ86XG9 351 aaPredicted RBP19.45■□□□□ 0.7
CBX3-203ENST00000409747 C16orf71Q8IYS4 520 aaPredicted RBP19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms