RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 ACSBG1Q96GR2 724 aa15.78■□□□□ 0.12
CHMP3-204ENST00000409727 DBF4Q9UBU7 674 aaPredicted RBP15.78■□□□□ 0.12
CHMP3-204ENST00000409727 USP16Q9Y5T5 823 aa15.78■□□□□ 0.12
CHMP3-204ENST00000409727 KAT6BQ8WYB5 2073 aa15.78■□□□□ 0.12
CHMP3-204ENST00000409727 PIP4K2AP48426 406 aaPredicted RBP15.78■□□□□ 0.12
CHMP3-204ENST00000409727 PRIM1P49642 420 aaKnown RBP15.78■□□□□ 0.12
CHMP3-204ENST00000409727 CHMP4AQ9BY43 222 aa15.78■□□□□ 0.12
CHMP3-204ENST00000409727 ASAP1Q9ULH1 1129 aa15.78■□□□□ 0.12
CHMP3-204ENST00000409727 PCDHB15Q9Y5E8 787 aa15.78■□□□□ 0.12
CHMP3-204ENST00000409727 PELP1Q8IZL8 1130 aaKnown RBP15.77■□□□□ 0.11
CHMP3-204ENST00000409727 MYL6BP14649 208 aa15.76■□□□□ 0.11
CHMP3-204ENST00000409727 C1orf115Q9H7X2 142 aa15.76■□□□□ 0.11
CHMP3-204ENST00000409727 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.76■□□□□ 0.11
CHMP3-204ENST00000409727 ITGB4P16144 1822 aa15.76■□□□□ 0.11
CHMP3-204ENST00000409727 IGHDP01880 384 aa15.76■□□□□ 0.11
CHMP3-204ENST00000409727 DOT1LQ8TEK3 1739 aa15.75■□□□□ 0.11
CHMP3-204ENST00000409727 PAPPAQ13219 1627 aa15.75■□□□□ 0.11
CHMP3-204ENST00000409727 ZBTB7BO15156 539 aaPredicted RBP15.75■□□□□ 0.11
CHMP3-204ENST00000409727 AIMP1Q12904 312 aaKnown RBP15.75■□□□□ 0.11
CHMP3-204ENST00000409727 AAMPQ13685 434 aa15.75■□□□□ 0.11
CHMP3-204ENST00000409727 INTS3Q68E01 1043 aaKnown RBP15.75■□□□□ 0.11
CHMP3-204ENST00000409727 GJD4Q96KN9 370 aaPredicted RBP15.75■□□□□ 0.11
CHMP3-204ENST00000409727 RBM42Q9BTD8 480 aaKnown RBP15.75■□□□□ 0.11
CHMP3-204ENST00000409727 ZBTB40Q9NUA8 1239 aa15.75■□□□□ 0.11
CHMP3-204ENST00000409727 KCPQ6ZWJ8 1503 aa15.75■□□□□ 0.11
CHMP3-204ENST00000409727 ATG3Q9NT62 314 aa15.74■□□□□ 0.11
CHMP3-204ENST00000409727 BCL9O00512 1426 aa15.74■□□□□ 0.11
CHMP3-204ENST00000409727 KDM2BQ8NHM5 1336 aa15.74■□□□□ 0.11
CHMP3-204ENST00000409727 PDIA6Q15084 440 aa15.74■□□□□ 0.11
CHMP3-204ENST00000409727 CENPQQ7L2Z9 268 aaPredicted RBP15.74■□□□□ 0.11
CHMP3-204ENST00000409727 DDX21Q9NR30 783 aaKnown RBP eCLIP15.74■□□□□ 0.11
CHMP3-204ENST00000409727 TRPC5Q9UL62 973 aaPredicted RBP15.74■□□□□ 0.11
CHMP3-204ENST00000409727 CACNA1FO60840 1977 aa15.73■□□□□ 0.11
CHMP3-204ENST00000409727 UBR2Q8IWV8 1755 aa15.73■□□□□ 0.11
CHMP3-204ENST00000409727 GLI3P10071 1580 aa15.73■□□□□ 0.11
CHMP3-204ENST00000409727 SKAP1Q86WV1 359 aa15.73■□□□□ 0.11
CHMP3-204ENST00000409727 HYPKQ9NX55 129 aa15.73■□□□□ 0.11
CHMP3-204ENST00000409727 PI4KAP2A4QPH2 592 aa15.72■□□□□ 0.11
CHMP3-204ENST00000409727 CCT4P50991 539 aaKnown RBP15.72■□□□□ 0.11
CHMP3-204ENST00000409727 FAM182BQ5T319 152 aa15.72■□□□□ 0.11
CHMP3-204ENST00000409727 PI4KAP1Q8N8J0 262 aa15.72■□□□□ 0.11
CHMP3-204ENST00000409727 QTRT2Q9H974 415 aaKnown RBP15.72■□□□□ 0.11
CHMP3-204ENST00000409727 CHMP4BQ9H444 224 aaKnown RBP15.71■□□□□ 0.11
CHMP3-204ENST00000409727 ATRNO75882 1429 aa15.71■□□□□ 0.11
CHMP3-204ENST00000409727 KCNQ2O43526 872 aa15.71■□□□□ 0.11
CHMP3-204ENST00000409727 MEIS3Q99687 375 aa15.71■□□□□ 0.11
CHMP3-204ENST00000409727 A1BGP04217 495 aa15.7■□□□□ 0.1
CHMP3-204ENST00000409727 LAMB4A4D0S4 1761 aa15.7■□□□□ 0.1
CHMP3-204ENST00000409727 XAGE3Q8WTP9 111 aa15.69■□□□□ 0.1
CHMP3-204ENST00000409727 DNAAF4Q8WXU2 420 aa15.69■□□□□ 0.1
CHMP3-204ENST00000409727 RWDD1Q9H446 243 aaPredicted RBP15.69■□□□□ 0.1
CHMP3-204ENST00000409727 MAP3K2Q9Y2U5 619 aa15.69■□□□□ 0.1
CHMP3-204ENST00000409727 ADCY9O60503 1353 aa15.69■□□□□ 0.1
CHMP3-204ENST00000409727 THSD7AQ9UPZ6 1657 aa15.69■□□□□ 0.1
CHMP3-204ENST00000409727 COPS6Q7L5N1 327 aa15.69■□□□□ 0.1
CHMP3-204ENST00000409727 DNAJC10Q8IXB1 793 aa15.69■□□□□ 0.1
CHMP3-204ENST00000409727 SEPT12Q8IYM1 358 aa15.68■□□□□ 0.1
CHMP3-204ENST00000409727 NBPF26B4DH59 902 aa15.67■□□□□ 0.1
CHMP3-204ENST00000409727 DDX58O95786 925 aaKnown RBP15.67■□□□□ 0.1
CHMP3-204ENST00000409727 NBPF14Q5TI25 921 aa15.67■□□□□ 0.1
CHMP3-204ENST00000409727 NBPF10Q6P3W6 841 aaKnown RBP15.67■□□□□ 0.1
CHMP3-204ENST00000409727 KSR2Q6VAB6 950 aa15.67■□□□□ 0.1
CHMP3-204ENST00000409727 RIC3Q7Z5B4 369 aa15.67■□□□□ 0.1
CHMP3-204ENST00000409727 NBPF15Q8N660 670 aa15.67■□□□□ 0.1
CHMP3-204ENST00000409727 ZNF330Q9Y3S2 320 aaPredicted RBP15.67■□□□□ 0.1
CHMP3-204ENST00000409727 SLC4A9Q96Q91 983 aa15.67■□□□□ 0.1
CHMP3-204ENST00000409727 SRCIN1Q9C0H9 1055 aa15.67■□□□□ 0.1
CHMP3-204ENST00000409727 PXDNLA1KZ92 1463 aa15.66■□□□□ 0.1
CHMP3-204ENST00000409727 LRP10Q7Z4F1 713 aa15.66■□□□□ 0.1
CHMP3-204ENST00000409727 BEND3Q5T5X7 828 aa15.65■□□□□ 0.1
CHMP3-204ENST00000409727 PTF1AQ7RTS3 328 aa15.65■□□□□ 0.1
CHMP3-204ENST00000409727 VSIG10Q8N0Z9 540 aa15.65■□□□□ 0.1
CHMP3-204ENST00000409727 HDAC1Q13547 482 aaPredicted RBP15.65■□□□□ 0.1
CHMP3-204ENST00000409727 STARD3NLO95772 234 aa15.64■□□□□ 0.09
CHMP3-204ENST00000409727 CWF19L2Q2TBE0 894 aaKnown RBP15.64■□□□□ 0.09
CHMP3-204ENST00000409727 ANKRD13DQ6ZTN6 518 aa15.64■□□□□ 0.09
CHMP3-204ENST00000409727 TEX13AQ9BXU3 409 aaPredicted RBP15.64■□□□□ 0.09
CHMP3-204ENST00000409727 ERBB4Q15303 1308 aa15.64■□□□□ 0.09
CHMP3-204ENST00000409727 ONECUT3O60422 494 aaPredicted RBP15.63■□□□□ 0.09
CHMP3-204ENST00000409727 SIRT2Q8IXJ6 389 aa15.63■□□□□ 0.09
CHMP3-204ENST00000409727 ARXQ96QS3 562 aa15.63■□□□□ 0.09
CHMP3-204ENST00000409727 USP44Q9H0E7 712 aa15.63■□□□□ 0.09
CHMP3-204ENST00000409727 PALLDQ8WX93 1383 aa15.63■□□□□ 0.09
CHMP3-204ENST00000409727 ATP6V1AP38606 617 aa15.63■□□□□ 0.09
CHMP3-204ENST00000409727 RGS3P49796 1198 aa15.63■□□□□ 0.09
CHMP3-204ENST00000409727 TTLL7Q6ZT98 887 aa15.63■□□□□ 0.09
CHMP3-204ENST00000409727 N4BP2Q86UW6 1770 aaPredicted RBP15.62■□□□□ 0.09
CHMP3-204ENST00000409727 LOC102724428A0A0B4J2F2 783 aa15.62■□□□□ 0.09
CHMP3-204ENST00000409727 GNAI2P04899 355 aa15.62■□□□□ 0.09
CHMP3-204ENST00000409727 GNAI3P08754 354 aa15.62■□□□□ 0.09
CHMP3-204ENST00000409727 UBTFL1P0CB47 393 aaPredicted RBP15.62■□□□□ 0.09
CHMP3-204ENST00000409727 SIK1P57059 783 aa15.62■□□□□ 0.09
CHMP3-204ENST00000409727 MYD88Q99836 296 aa15.62■□□□□ 0.09
CHMP3-204ENST00000409727 NBPF7P0C2Y1 421 aaPredicted RBP15.61■□□□□ 0.09
CHMP3-204ENST00000409727 CYP19A1P11511 503 aaPredicted RBP15.61■□□□□ 0.09
CHMP3-204ENST00000409727 ZNF772Q68DY9 489 aaPredicted RBP15.61■□□□□ 0.09
CHMP3-204ENST00000409727 CEP85Q6P2H3 762 aa15.61■□□□□ 0.09
CHMP3-204ENST00000409727 LRRFIP2Q9Y608 721 aaKnown RBP15.61■□□□□ 0.09
CHMP3-204ENST00000409727 ATP10DQ9P241 1426 aa15.61■□□□□ 0.09
CHMP3-204ENST00000409727 NEXNQ0ZGT2 675 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms