RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 RSRC1Q96IZ7 334 aaKnown RBP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 TUBB4AP04350 444 aa9.07□□□□□ -0.96
SYNE1-210ENST00000409694 STIM2Q9P246 746 aa9.07□□□□□ -0.96
SYNE1-210ENST00000409694 ATP2A2P16615 1042 aaKnown RBP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 SUPT6HQ7KZ85 1726 aaKnown RBP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 ERCC6LQ2NKX8 1250 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 RGS22Q8NE09 1264 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 NDC80O14777 642 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 IPO4Q8TEX9 1081 aaKnown RBP9.06□□□□□ -0.96
SYNE1-210ENST00000409694 TOP2AP11388 1531 aaKnown RBP9.06□□□□□ -0.96
SYNE1-210ENST00000409694 PSMC4P43686 418 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 PRPF31Q8WWY3 499 aaKnown RBP9.06□□□□□ -0.96
SYNE1-210ENST00000409694 CWC25Q9NXE8 425 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-210ENST00000409694 CCDC171Q6TFL3 1326 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 SMC1BQ8NDV3 1235 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 PANK1Q8TE04 598 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 AKAP2Q9Y2D5 859 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 NLRP2Q9NX02 1062 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 SH3BGRP55822 239 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-210ENST00000409694 TDRD12Q587J7 1177 aaKnown RBP9.06□□□□□ -0.96
SYNE1-210ENST00000409694 DZIP1Q86YF9 867 aaKnown RBP9.06□□□□□ -0.96
SYNE1-210ENST00000409694 FMNL3Q8IVF7 1028 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 AIDAQ96BJ3 306 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 CALML4Q96GE6 196 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 CFAP58Q5T655 872 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 CTAGE1Q96RT6 745 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 PPP1R9BQ96SB3 815 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 KIF21BO75037 1637 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 MYOM3Q5VTT5 1437 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 SARNPP82979 210 aaKnown RBP9.06□□□□□ -0.96
SYNE1-210ENST00000409694 CEP120Q8N960 986 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 MIPOL1Q8TD10 442 aa9.06□□□□□ -0.96
SYNE1-210ENST00000409694 STMN1P16949 149 aa9.05□□□□□ -0.96
SYNE1-210ENST00000409694 KIF5BP33176 963 aa9.05□□□□□ -0.96
SYNE1-210ENST00000409694 WDR63Q8IWG1 891 aa9.05□□□□□ -0.96
SYNE1-210ENST00000409694 IGHMBP2P38935 993 aaKnown RBP9.05□□□□□ -0.96
SYNE1-210ENST00000409694 RMND1Q9NWS8 449 aa9.05□□□□□ -0.96
SYNE1-210ENST00000409694 VIMP08670 466 aaKnown RBP9.05□□□□□ -0.96
SYNE1-210ENST00000409694 MAP7Q14244 749 aa9.05□□□□□ -0.96
SYNE1-210ENST00000409694 ZSCAN29Q8IWY8 852 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-210ENST00000409694 URI1O94763 535 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-210ENST00000409694 FAM184BQ9ULE4 1060 aa9.05□□□□□ -0.96
SYNE1-210ENST00000409694 PRIMPOLQ96LW4 560 aa9.05□□□□□ -0.96
SYNE1-210ENST00000409694 STRN4Q9NRL3 753 aa9.05□□□□□ -0.96
SYNE1-210ENST00000409694 NCAPGQ9BPX3 1015 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 PHF23Q9BUL5 403 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-210ENST00000409694 GAS8O95995 478 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 CCDC174Q6PII3 467 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 JADE2Q9NQC1 790 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 FEZ2Q9UHY8 353 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-210ENST00000409694 USP5P45974 858 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 CCDC121Q6ZUS5 278 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 PRKCSHP14314 528 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-210ENST00000409694 ZNF428Q96B54 188 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 SPG7Q9UQ90 795 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 RAB11FIP3O75154 756 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 CIB2O75838 187 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 ATP5DP30049 168 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 SYNCQ9H7C4 482 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 AACSQ86V21 672 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 UTP14AQ9BVJ6 771 aaKnown RBP9.04□□□□□ -0.96
SYNE1-210ENST00000409694 VCX3BQ9H321 246 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 RNF41Q9H4P4 317 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-210ENST00000409694 ZNF652Q9Y2D9 606 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 CCDC129Q6ZRS4 1044 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 JAKMIP1Q96N16 626 aaKnown RBP9.04□□□□□ -0.96
SYNE1-210ENST00000409694 RPGRIP1LQ68CZ1 1315 aa9.04□□□□□ -0.96
SYNE1-210ENST00000409694 TATP17735 454 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 ARL1P40616 181 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 FKBP4Q02790 459 aaKnown RBP eCLIP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 LRP2BPQ9P2M1 347 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 CASQ2O14958 399 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 SH2D4BQ5SQS7 431 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 APBB1IPQ7Z5R6 666 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 HMOX1P09601 288 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 SNW1Q13573 536 aaKnown RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 PPP4R3BQ5MIZ7 849 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 UBA5Q9GZZ9 404 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 BRPF3Q9ULD4 1205 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 MSANTD4Q8NCY6 345 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 CTCFLQ8NI51 663 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 USP25Q9UHP3 1055 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 SYCE3A1L190 88 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 KRT222Q8N1A0 295 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 LMBR1Q8WVP7 490 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 NBPF1Q3BBV0 1214 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 LRSAM1Q6UWE0 723 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 VCXQ9H320 206 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 PIP4K2BP78356 416 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 SETDB1Q15047 1291 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 TWISTNBQ3B726 338 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 SRRTQ9BXP5 876 aaKnown RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 DDX19AQ9NUU7 478 aaKnown RBP9.03□□□□□ -0.96
SYNE1-210ENST00000409694 HYPKQ9NX55 129 aa9.03□□□□□ -0.96
SYNE1-210ENST00000409694 TNNT1P13805 278 aa9.02□□□□□ -0.96
SYNE1-210ENST00000409694 GTF2F1P35269 517 aaKnown RBP eCLIP9.02□□□□□ -0.96
SYNE1-210ENST00000409694 CBX1P83916 185 aa9.02□□□□□ -0.96
SYNE1-210ENST00000409694 ZBTB16Q05516 673 aa9.02□□□□□ -0.96
SYNE1-210ENST00000409694 PRPF4BQ13523 1007 aaKnown RBP9.02□□□□□ -0.96
SYNE1-210ENST00000409694 TCP11L1Q9NUJ3 509 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms