RNA–Protein interactions for RNA: ENST00000409455.5

LIMS2-205, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,500 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-205ENST00000409455 NPHP3Q7Z494 1330 aa18.73■□□□□ 0.59
LIMS2-205ENST00000409455 ERC2O15083 957 aa18.73■□□□□ 0.59
LIMS2-205ENST00000409455 HMGN5P82970 282 aaKnown RBP18.73■□□□□ 0.59
LIMS2-205ENST00000409455 TRPM3Q9HCF6 1732 aaPredicted RBP18.73■□□□□ 0.59
LIMS2-205ENST00000409455 USHBP1Q8N6Y0 703 aa18.72■□□□□ 0.59
LIMS2-205ENST00000409455 OTUD7AQ8TE49 926 aaPredicted RBP18.72■□□□□ 0.59
LIMS2-205ENST00000409455 PRDM10Q9NQV6 1147 aa18.72■□□□□ 0.59
LIMS2-205ENST00000409455 DLG5Q8TDM6 1919 aa18.72■□□□□ 0.59
LIMS2-205ENST00000409455 PODXL2Q9NZ53 605 aa18.72■□□□□ 0.59
LIMS2-205ENST00000409455 MCM2P49736 904 aa18.71■□□□□ 0.59
LIMS2-205ENST00000409455 UTP14CQ5TAP6 766 aaKnown RBP18.71■□□□□ 0.59
LIMS2-205ENST00000409455 NBPF6Q5VWK0 638 aa18.71■□□□□ 0.59
LIMS2-205ENST00000409455 ANKRD44Q8N8A2 993 aa18.71■□□□□ 0.59
LIMS2-205ENST00000409455 NBPF4Q96M43 638 aa18.71■□□□□ 0.59
LIMS2-205ENST00000409455 LTN1O94822 1766 aa18.71■□□□□ 0.59
LIMS2-205ENST00000409455 BRD1O95696 1058 aa18.71■□□□□ 0.59
LIMS2-205ENST00000409455 BRINP3Q76B58 766 aa18.71■□□□□ 0.59
LIMS2-205ENST00000409455 TMX3Q96JJ7 454 aa18.71■□□□□ 0.59
LIMS2-205ENST00000409455 XIRP1Q702N8 1843 aaKnown RBP18.71■□□□□ 0.59
LIMS2-205ENST00000409455 RPAP2Q8IXW5 612 aaPredicted RBP18.7■□□□□ 0.58
LIMS2-205ENST00000409455 FAM184AQ8NB25 1140 aa18.7■□□□□ 0.58
LIMS2-205ENST00000409455 SLAIN2Q9P270 581 aa18.7■□□□□ 0.58
LIMS2-205ENST00000409455 NEK4P51957 841 aa18.7■□□□□ 0.58
LIMS2-205ENST00000409455 ZC3H6P61129 1189 aaKnown RBP18.7■□□□□ 0.58
LIMS2-205ENST00000409455 DMTNQ08495 405 aa18.7■□□□□ 0.58
LIMS2-205ENST00000409455 SLIT3O75094 1523 aa18.7■□□□□ 0.58
LIMS2-205ENST00000409455 PIBF1Q8WXW3 757 aa18.69■□□□□ 0.58
LIMS2-205ENST00000409455 AXIN2Q9Y2T1 843 aa18.69■□□□□ 0.58
LIMS2-205ENST00000409455 ATP10DQ9P241 1426 aa18.69■□□□□ 0.58
LIMS2-205ENST00000409455 LRRC59Q96AG4 307 aaKnown RBP18.69■□□□□ 0.58
LIMS2-205ENST00000409455 C8orf58Q8NAV2 365 aa18.68■□□□□ 0.58
LIMS2-205ENST00000409455 APBB1O00213 710 aa18.68■□□□□ 0.58
LIMS2-205ENST00000409455 CABLES1Q8TDN4 633 aa18.68■□□□□ 0.58
LIMS2-205ENST00000409455 GTF2F1P35269 517 aaKnown RBP eCLIP18.67■□□□□ 0.58
LIMS2-205ENST00000409455 RTF1Q92541 710 aaKnown RBP18.67■□□□□ 0.58
LIMS2-205ENST00000409455 ZHX1Q9UKY1 873 aaPredicted RBP18.67■□□□□ 0.58
LIMS2-205ENST00000409455 SMARCA5O60264 1052 aaPredicted RBP18.67■□□□□ 0.58
LIMS2-205ENST00000409455 UVSSAQ2YD98 709 aa18.67■□□□□ 0.58
LIMS2-205ENST00000409455 CEP85Q6P2H3 762 aa18.67■□□□□ 0.58
LIMS2-205ENST00000409455 NOLC1Q14978 699 aaKnown RBP eCLIP18.66■□□□□ 0.58
LIMS2-205ENST00000409455 SPATA31A3Q5VYP0 1347 aa18.66■□□□□ 0.58
LIMS2-205ENST00000409455 CHL1O00533 1208 aa18.66■□□□□ 0.58
LIMS2-205ENST00000409455 ALS2Q96Q42 1657 aa18.65■□□□□ 0.58
LIMS2-205ENST00000409455 ANKRD24Q8TF21 1146 aa18.65■□□□□ 0.58
LIMS2-205ENST00000409455 INTS4Q96HW7 963 aaKnown RBP18.65■□□□□ 0.58
LIMS2-205ENST00000409455 ZSCAN20P17040 1043 aaPredicted RBP18.65■□□□□ 0.58
LIMS2-205ENST00000409455 MCCP23508 829 aa18.65■□□□□ 0.58
LIMS2-205ENST00000409455 CUL4AQ13619 759 aa18.65■□□□□ 0.58
LIMS2-205ENST00000409455 MED1Q15648 1581 aaPredicted RBP18.64■□□□□ 0.58
LIMS2-205ENST00000409455 KIF3AQ9Y496 699 aa18.64■□□□□ 0.57
LIMS2-205ENST00000409455 PXDNQ92626 1479 aa18.64■□□□□ 0.57
LIMS2-205ENST00000409455 USP25Q9UHP3 1055 aa18.64■□□□□ 0.57
LIMS2-205ENST00000409455 ZNF710Q8N1W2 664 aa18.63■□□□□ 0.57
LIMS2-205ENST00000409455 MIS18AQ9NYP9 233 aa18.63■□□□□ 0.57
LIMS2-205ENST00000409455 CRB1P82279 1406 aa18.63■□□□□ 0.57
LIMS2-205ENST00000409455 TNS3Q68CZ2 1445 aa18.63■□□□□ 0.57
LIMS2-205ENST00000409455 GNAT3A8MTJ3 354 aa18.63■□□□□ 0.57
LIMS2-205ENST00000409455 PHRF1Q9P1Y6 1649 aaKnown RBP18.63■□□□□ 0.57
LIMS2-205ENST00000409455 HAP1P54257 671 aaPredicted RBP18.62■□□□□ 0.57
LIMS2-205ENST00000409455 ZNF830Q96NB3 372 aaPredicted RBP18.62■□□□□ 0.57
LIMS2-205ENST00000409455 KRT24Q2M2I5 525 aa18.62■□□□□ 0.57
LIMS2-205ENST00000409455 HTATSF1O43719 755 aaKnown RBP18.61■□□□□ 0.57
LIMS2-205ENST00000409455 HMMRO75330 724 aa18.61■□□□□ 0.57
LIMS2-205ENST00000409455 MPNDQ8N594 471 aa18.61■□□□□ 0.57
LIMS2-205ENST00000409455 TSC1Q92574 1164 aa18.61■□□□□ 0.57
LIMS2-205ENST00000409455 FKBP5Q13451 457 aaPredicted RBP18.61■□□□□ 0.57
LIMS2-205ENST00000409455 JARID2Q92833 1246 aaPredicted RBP18.61■□□□□ 0.57
LIMS2-205ENST00000409455 GTPBP4Q9BZE4 634 aaKnown RBP18.61■□□□□ 0.57
LIMS2-205ENST00000409455 OSBPL3Q9H4L5 887 aa18.61■□□□□ 0.57
LIMS2-205ENST00000409455 WDR33Q9C0J8 1336 aaKnown RBP18.6■□□□□ 0.57
LIMS2-205ENST00000409455 ADCY5O95622 1261 aa18.6■□□□□ 0.57
LIMS2-205ENST00000409455 IL17REQ8NFR9 667 aa18.6■□□□□ 0.57
LIMS2-205ENST00000409455 TTC12Q9H892 705 aaPredicted RBP18.6■□□□□ 0.57
LIMS2-205ENST00000409455 GDPD2Q9HCC8 539 aa18.6■□□□□ 0.57
LIMS2-205ENST00000409455 SPTLC3Q9NUV7 552 aa18.6■□□□□ 0.57
LIMS2-205ENST00000409455 GADD45BO75293 160 aaPredicted RBP18.6■□□□□ 0.57
LIMS2-205ENST00000409455 ANAPC15P60006 121 aa18.6■□□□□ 0.57
LIMS2-205ENST00000409455 FOXD4L6Q3SYB3 417 aaPredicted RBP18.6■□□□□ 0.57
LIMS2-205ENST00000409455 PPP4R3BQ5MIZ7 849 aa18.6■□□□□ 0.57
LIMS2-205ENST00000409455 CCDC183Q5T5S1 534 aa18.6■□□□□ 0.57
LIMS2-205ENST00000409455 FOXD4L3Q6VB84 417 aaPredicted RBP18.6■□□□□ 0.57
LIMS2-205ENST00000409455 NOL8Q76FK4 1167 aaKnown RBP18.6■□□□□ 0.57
LIMS2-205ENST00000409455 USP48Q86UV5 1035 aa18.6■□□□□ 0.57
LIMS2-205ENST00000409455 PDE1AP54750 535 aa18.59■□□□□ 0.57
LIMS2-205ENST00000409455 CBX1P83916 185 aa18.59■□□□□ 0.57
LIMS2-205ENST00000409455 ERBB3P21860 1342 aa18.59■□□□□ 0.57
LIMS2-205ENST00000409455 SOS2Q07890 1332 aaPredicted RBP18.59■□□□□ 0.57
LIMS2-205ENST00000409455 LETM1O95202 739 aaPredicted RBP18.59■□□□□ 0.57
LIMS2-205ENST00000409455 CHRNA2Q15822 529 aa18.59■□□□□ 0.57
LIMS2-205ENST00000409455 RGS12O14924 1447 aa18.58■□□□□ 0.57
LIMS2-205ENST00000409455 ESYT1Q9BSJ8 1104 aa18.58■□□□□ 0.57
LIMS2-205ENST00000409455 TSPYL4Q9UJ04 414 aa18.58■□□□□ 0.57
LIMS2-205ENST00000409455 MAP3K5Q99683 1374 aa18.58■□□□□ 0.56
LIMS2-205ENST00000409455 CHAF1AQ13111 956 aaPredicted RBP18.58■□□□□ 0.56
LIMS2-205ENST00000409455 MEIS3Q99687 375 aa18.58■□□□□ 0.56
LIMS2-205ENST00000409455 RGPD2P0DJD1 1756 aa18.57■□□□□ 0.56
LIMS2-205ENST00000409455 C17orf53Q8N3J3 647 aaPredicted RBP18.57■□□□□ 0.56
LIMS2-205ENST00000409455 PTPRCP08575 1304 aa18.57■□□□□ 0.56
LIMS2-205ENST00000409455 ANO2Q9NQ90 1003 aa18.56■□□□□ 0.56
LIMS2-205ENST00000409455 PALD1Q9ULE6 856 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms