RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 HSPA4P34932 840 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 TJP1Q07157 1748 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 NGDNQ8NEJ9 315 aaKnown RBP4.73□□□□□ -1.65
RTN4-209ENST00000405240 PDLIM2Q96JY6 352 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 SHANK3Q9BYB0 1731 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 ERBB4Q15303 1308 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 LAMA4Q16363 1823 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 TMEM94Q12767 1356 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 NLRP6P59044 892 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 PKP1Q13835 747 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 GPT2Q8TD30 523 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 STK31Q9BXU1 1019 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 XIRP1Q702N8 1843 aaKnown RBP4.73□□□□□ -1.65
RTN4-209ENST00000405240 COL15A1P39059 1388 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 RPAP1Q9BWH6 1393 aaPredicted RBP4.73□□□□□ -1.65
RTN4-209ENST00000405240 HS1BP3Q53T59 392 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 ZGPATQ8N5A5 531 aaKnown RBP4.73□□□□□ -1.65
RTN4-209ENST00000405240 TMEM87AQ8NBN3 555 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 TTC14Q96N46 770 aa4.73□□□□□ -1.65
RTN4-209ENST00000405240 LRRFIP2Q9Y608 721 aaKnown RBP4.73□□□□□ -1.65
RTN4-209ENST00000405240 AKAP4Q5JQC9 854 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 NBPF6Q5VWK0 638 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 UNC5CLQ8IV45 518 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 TMX3Q96JJ7 454 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 NBPF4Q96M43 638 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 IL25Q9H293 177 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 PALD1Q9ULE6 856 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 CCDC173Q0VFZ6 552 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 CHMP4AQ9BY43 222 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 LSG1Q9H089 658 aaKnown RBP4.72□□□□□ -1.65
RTN4-209ENST00000405240 GZF1Q9H116 711 aaPredicted RBP4.72□□□□□ -1.65
RTN4-209ENST00000405240 PHF8Q9UPP1 1060 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 EXOC6BQ9Y2D4 811 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 TTC41PQ6P2S7 1318 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 ZSCAN23Q3MJ62 389 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 PHAXQ9H814 394 aaKnown RBP4.72□□□□□ -1.65
RTN4-209ENST00000405240 NUTM2FA1L443 756 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 SGSM2O43147 1006 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 ARHGEF25Q86VW2 580 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 KCNH5Q8NCM2 988 aa4.72□□□□□ -1.65
RTN4-209ENST00000405240 RAD50Q92878 1312 aa4.71□□□□□ -1.65
RTN4-209ENST00000405240 SPEF2Q9C093 1822 aa4.71□□□□□ -1.65
RTN4-209ENST00000405240 GOLGA6L22H0YM25 854 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 ALDH1L1O75891 902 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 FKBP5Q13451 457 aaPredicted RBP4.71□□□□□ -1.66
RTN4-209ENST00000405240 ABTB2Q8N961 1025 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 RHPN1Q8TCX5 695 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 LGR6Q9HBX8 967 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 ABCA3Q99758 1704 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 RNMTO43148 476 aaKnown RBP4.71□□□□□ -1.66
RTN4-209ENST00000405240 AMOTQ4VCS5 1084 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 SLC4A10Q6U841 1118 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 PPP1R42Q7Z4L9 355 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 ALDH8A1Q9H2A2 487 aaPredicted RBP4.71□□□□□ -1.66
RTN4-209ENST00000405240 NPHP4O75161 1426 aaPredicted RBP4.71□□□□□ -1.66
RTN4-209ENST00000405240 ESPNB1AK53 854 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 UBTFL1P0CB47 393 aaPredicted RBP4.71□□□□□ -1.66
RTN4-209ENST00000405240 PDIA6Q15084 440 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 FOXD4L1Q9NU39 408 aa4.71□□□□□ -1.66
RTN4-209ENST00000405240 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.71□□□□□ -1.66
RTN4-209ENST00000405240 KDM6AO15550 1401 aaPredicted RBP4.7□□□□□ -1.66
RTN4-209ENST00000405240 NBPF7P0C2Y1 421 aaPredicted RBP4.7□□□□□ -1.66
RTN4-209ENST00000405240 HDGFL1Q5TGJ6 251 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 MCTP1Q6DN14 999 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 LRSAM1Q6UWE0 723 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 LRP10Q7Z4F1 713 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 DNAAF4Q8WXU2 420 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 KIF1BPQ96EK5 621 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 GIGYF1O75420 1035 aaPredicted RBP4.7□□□□□ -1.66
RTN4-209ENST00000405240 KAZALD1Q96I82 304 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 TM6SF1Q9BZW5 370 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 RBSNQ9H1K0 784 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 DDX49Q9Y6V7 483 aaKnown RBP4.7□□□□□ -1.66
RTN4-209ENST00000405240 C1orf167Q5SNV9 1468 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 DCCP43146 1447 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 KCNQ3O43525 872 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 MCCP23508 829 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 NEK4P51957 841 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 TSHZ3Q63HK5 1081 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 TMEM63CQ9P1W3 806 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 CHPF2Q9P2E5 772 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 NSFL1CQ9UNZ2 370 aaKnown RBP4.7□□□□□ -1.66
RTN4-209ENST00000405240 SNX14Q9Y5W7 946 aa4.7□□□□□ -1.66
RTN4-209ENST00000405240 HSP90AA1P07900 732 aaKnown RBP4.69□□□□□ -1.66
RTN4-209ENST00000405240 NASPP49321 788 aaPredicted RBP4.69□□□□□ -1.66
RTN4-209ENST00000405240 TERF1P54274 439 aa4.69□□□□□ -1.66
RTN4-209ENST00000405240 HSP90AB4PQ58FF6 505 aa4.69□□□□□ -1.66
RTN4-209ENST00000405240 RFX7Q2KHR2 1363 aa4.69□□□□□ -1.66
RTN4-209ENST00000405240 MBD3O95983 291 aa4.69□□□□□ -1.66
RTN4-209ENST00000405240 PLEKHO1Q53GL0 409 aaPredicted RBP4.69□□□□□ -1.66
RTN4-209ENST00000405240 KSR2Q6VAB6 950 aa4.69□□□□□ -1.66
RTN4-209ENST00000405240 DBF4Q9UBU7 674 aaPredicted RBP4.69□□□□□ -1.66
RTN4-209ENST00000405240 ZNF500O60304 480 aaPredicted RBP4.69□□□□□ -1.66
RTN4-209ENST00000405240 PRIM1P49642 420 aaKnown RBP4.69□□□□□ -1.66
RTN4-209ENST00000405240 TSGA10IPQ3SY00 556 aa4.69□□□□□ -1.66
RTN4-209ENST00000405240 ANKLE2Q86XL3 938 aa4.69□□□□□ -1.66
RTN4-209ENST00000405240 USHBP1Q8N6Y0 703 aa4.69□□□□□ -1.66
RTN4-209ENST00000405240 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.69□□□□□ -1.66
RTN4-209ENST00000405240 PI4KAP2A4QPH2 592 aa4.68□□□□□ -1.66
RTN4-209ENST00000405240 SOX12O15370 315 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms