RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 HEG1Q9ULI3 1381 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 MRC1P22897 1456 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 KDM3BQ7LBC6 1761 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 ADAMTS7Q9UKP4 1686 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 PI4KAP2A4QPH2 592 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 SEPT12Q8IYM1 358 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 PI4KAP1Q8N8J0 262 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 PCDHB15Q9Y5E8 787 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 SHANK3Q9BYB0 1731 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 ARXQ96QS3 562 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 DDX21Q9NR30 783 aaKnown RBP eCLIP4.69□□□□□ -1.664e-6■■■■□ 21
RTN4-208ENST00000404909 HYPKQ9NX55 129 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 ZBTB7BO15156 539 aaPredicted RBP4.68□□□□□ -1.66
RTN4-208ENST00000404909 A1BGP04217 495 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 PDIA6Q15084 440 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 ZBTB40Q9NUA8 1239 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 BCL9O00512 1426 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 SIPA1L3O60292 1781 aaPredicted RBP4.68□□□□□ -1.66
RTN4-208ENST00000404909 INTS3Q68E01 1043 aaKnown RBP4.68□□□□□ -1.66
RTN4-208ENST00000404909 COPS6Q7L5N1 327 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 DNAJC10Q8IXB1 793 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 XAGE3Q8WTP9 111 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 RGS12O14924 1447 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 IGHDP01880 384 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 CCT4P50991 539 aaKnown RBP4.68□□□□□ -1.66
RTN4-208ENST00000404909 PTF1AQ7RTS3 328 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 RIC3Q7Z5B4 369 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 FBXO41Q8TF61 875 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 DNAAF4Q8WXU2 420 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 CHMP4BQ9H444 224 aaKnown RBP4.68□□□□□ -1.66
RTN4-208ENST00000404909 MAP3K2Q9Y2U5 619 aa4.68□□□□□ -1.66
RTN4-208ENST00000404909 ATRNO75882 1429 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 STARD3NLO95772 234 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 DDX58O95786 925 aaKnown RBP4.67□□□□□ -1.66
RTN4-208ENST00000404909 ZNF772Q68DY9 489 aaPredicted RBP4.67□□□□□ -1.66
RTN4-208ENST00000404909 SKAP1Q86WV1 359 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 MEIS3Q99687 375 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 TOGARAM1Q9Y4F4 1720 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 NBPF26B4DH59 902 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 ATP6V1AP38606 617 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 AAMPQ13685 434 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 NBPF14Q5TI25 921 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 NBPF10Q6P3W6 841 aaKnown RBP4.67□□□□□ -1.66
RTN4-208ENST00000404909 KSR2Q6VAB6 950 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 CENPQQ7L2Z9 268 aaPredicted RBP4.67□□□□□ -1.66
RTN4-208ENST00000404909 NBPF15Q8N660 670 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 SLC4A9Q96Q91 983 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 SRCIN1Q9C0H9 1055 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 BCL11AQ9H165 835 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 KCNQ4P56696 695 aa4.67□□□□□ -1.66
RTN4-208ENST00000404909 TEX13AQ9BXU3 409 aaPredicted RBP4.67□□□□□ -1.66
RTN4-208ENST00000404909 RWDD1Q9H446 243 aaPredicted RBP4.67□□□□□ -1.66
RTN4-208ENST00000404909 KCPQ6ZWJ8 1503 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 WNK3Q9BYP7 1800 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 ONECUT3O60422 494 aaPredicted RBP4.66□□□□□ -1.66
RTN4-208ENST00000404909 ANKRD13DQ6ZTN6 518 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 NPM2Q86SE8 214 aaKnown RBP4.66□□□□□ -1.66
RTN4-208ENST00000404909 GLI3P10071 1580 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 ADCY9O60503 1353 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 LOC102724428A0A0B4J2F2 783 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 SIK1P57059 783 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 CWF19L2Q2TBE0 894 aaKnown RBP4.66□□□□□ -1.66
RTN4-208ENST00000404909 VSIG10Q8N0Z9 540 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 KDM2BQ8NHM5 1336 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 PALLDQ8WX93 1383 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 RBM6P78332 1123 aaKnown RBP4.66□□□□□ -1.66
RTN4-208ENST00000404909 NEXNQ0ZGT2 675 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 BEND3Q5T5X7 828 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 TTLL7Q6ZT98 887 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 KRT27Q7Z3Y8 459 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 MYD88Q99836 296 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 ZBTB3Q9H5J0 574 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 C9orf78Q9NZ63 289 aaPredicted RBP4.66□□□□□ -1.66
RTN4-208ENST00000404909 C5P01031 1676 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 DOT1LQ8TEK3 1739 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 ITGB4P16144 1822 aa4.66□□□□□ -1.66
RTN4-208ENST00000404909 UBTFL1P0CB47 393 aaPredicted RBP4.65□□□□□ -1.66
RTN4-208ENST00000404909 LRP10Q7Z4F1 713 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 SMARCC1Q92922 1105 aaPredicted RBP4.65□□□□□ -1.66
RTN4-208ENST00000404909 USP44Q9H0E7 712 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.65□□□□□ -1.66
RTN4-208ENST00000404909 ATP5J2-PTCD1G3V325 749 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 GNAI2P04899 355 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 GNAI3P08754 354 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 CYP19A1P11511 503 aaPredicted RBP4.65□□□□□ -1.66
RTN4-208ENST00000404909 RXRBP28702 533 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 RGS3P49796 1198 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 ZBTB1Q9Y2K1 713 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 CACNA1FO60840 1977 aa4.65□□□□□ -1.66
RTN4-208ENST00000404909 ERBB4Q15303 1308 aa4.65□□□□□ -1.67
RTN4-208ENST00000404909 NBPF7P0C2Y1 421 aaPredicted RBP4.65□□□□□ -1.67
RTN4-208ENST00000404909 ITPK1Q13572 414 aa4.65□□□□□ -1.67
RTN4-208ENST00000404909 LRRFIP2Q9Y608 721 aaKnown RBP4.65□□□□□ -1.67
RTN4-208ENST00000404909 APBB1O00213 710 aa4.65□□□□□ -1.67
RTN4-208ENST00000404909 TRIM37O94972 964 aa4.65□□□□□ -1.67
RTN4-208ENST00000404909 HDAC1Q13547 482 aaPredicted RBP4.65□□□□□ -1.67
RTN4-208ENST00000404909 RTL5Q5HYW3 569 aaPredicted RBP4.65□□□□□ -1.67
RTN4-208ENST00000404909 SIRT2Q8IXJ6 389 aa4.65□□□□□ -1.67
RTN4-208ENST00000404909 LINS1Q8NG48 757 aa4.65□□□□□ -1.67
RTN4-208ENST00000404909 PLBD2Q8NHP8 589 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms