RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 NARFQ9UHQ1 456 aa38.45■■■■□ 3.75
HMGB1-205ENST00000399494 ZBTB1Q9Y2K1 713 aa38.43■■■■□ 3.74
HMGB1-205ENST00000399494 VIRMAQ69YN4 1812 aaKnown RBP38.42■■■■□ 3.74
HMGB1-205ENST00000399494 TOMM70O94826 608 aa38.42■■■■□ 3.74
HMGB1-205ENST00000399494 NMRK2Q9NPI5 230 aa38.41■■■■□ 3.74
HMGB1-205ENST00000399494 NFIXQ14938 502 aa38.4■■■■□ 3.74
HMGB1-205ENST00000399494 BCL2L12Q9HB09 334 aa38.4■■■■□ 3.74
HMGB1-205ENST00000399494 COL15A1P39059 1388 aa38.4■■■■□ 3.74
HMGB1-205ENST00000399494 NPC1L1Q9UHC9 1359 aa38.38■■■■□ 3.73
HMGB1-205ENST00000399494 COL3A1P02461 1466 aaPredicted RBP38.35■■■■□ 3.73
HMGB1-205ENST00000399494 CANXP27824 592 aaKnown RBP38.34■■■■□ 3.73
HMGB1-205ENST00000399494 IL17REQ8NFR9 667 aa38.34■■■■□ 3.73
HMGB1-205ENST00000399494 U2SURPO15042 1029 aaKnown RBP38.33■■■■□ 3.73
HMGB1-205ENST00000399494 SERPINB2P05120 415 aa38.33■■■■□ 3.73
HMGB1-205ENST00000399494 CNGB1Q14028 1251 aaPredicted RBP38.33■■■■□ 3.73
HMGB1-205ENST00000399494 TTC5Q8N0Z6 440 aa38.32■■■■□ 3.72
HMGB1-205ENST00000399494 RNF181Q9P0P0 153 aa38.32■■■■□ 3.72
HMGB1-205ENST00000399494 UBR2Q8IWV8 1755 aa38.31■■■■□ 3.72
HMGB1-205ENST00000399494 STARD3NLO95772 234 aa38.31■■■■□ 3.72
HMGB1-205ENST00000399494 APLP1P51693 650 aa38.31■■■■□ 3.72
HMGB1-205ENST00000399494 EIF5P55010 431 aaKnown RBP38.31■■■■□ 3.72
HMGB1-205ENST00000399494 IFFO2Q5TF58 517 aa38.31■■■■□ 3.72
HMGB1-205ENST00000399494 AFDNP55196 1824 aaKnown RBP38.31■■■■□ 3.72
HMGB1-205ENST00000399494 GNAT3A8MTJ3 354 aa38.3■■■■□ 3.72
HMGB1-205ENST00000399494 NRXN2Q9P2S2 1712 aa38.29■■■■□ 3.72
HMGB1-205ENST00000399494 GAS2L2Q8NHY3 880 aa38.29■■■■□ 3.72
HMGB1-205ENST00000399494 ZNF496Q96IT1 587 aaPredicted RBP38.29■■■■□ 3.72
HMGB1-205ENST00000399494 TEFQ10587 303 aa38.28■■■■□ 3.72
HMGB1-205ENST00000399494 ZNF790Q6PG37 636 aa38.28■■■■□ 3.72
HMGB1-205ENST00000399494 RBM46Q8TBY0 533 aaKnown RBP38.26■■■■□ 3.72
HMGB1-205ENST00000399494 A0A087WZG4 1122 aa38.25■■■■□ 3.71
HMGB1-205ENST00000399494 TEX13AQ9BXU3 409 aaPredicted RBP38.25■■■■□ 3.71
HMGB1-205ENST00000399494 SBF1O95248 1867 aa38.24■■■■□ 3.71
HMGB1-205ENST00000399494 HEG1Q9ULI3 1381 aa38.24■■■■□ 3.71
HMGB1-205ENST00000399494 KDM2BQ8NHM5 1336 aa38.24■■■■□ 3.71
HMGB1-205ENST00000399494 DNAJC5GQ8N7S2 189 aa38.24■■■■□ 3.71
HMGB1-205ENST00000399494 BICDL1Q6ZP65 573 aa38.22■■■■□ 3.71
HMGB1-205ENST00000399494 RRAGCQ9HB90 399 aa38.22■■■■□ 3.71
HMGB1-205ENST00000399494 C2CD5Q86YS7 1000 aa38.21■■■■□ 3.71
HMGB1-205ENST00000399494 C16orf71Q8IYS4 520 aaPredicted RBP38.21■■■■□ 3.71
HMGB1-205ENST00000399494 TTLL6Q8N841 843 aa38.21■■■■□ 3.71
HMGB1-205ENST00000399494 RASSF7Q02833 373 aa38.2■■■■□ 3.71
HMGB1-205ENST00000399494 PHACTR3Q96KR7 559 aa38.2■■■■□ 3.71
HMGB1-205ENST00000399494 TBC1D9BQ66K14 1250 aa38.19■■■■□ 3.7
HMGB1-205ENST00000399494 H0YIN7 160 aa38.18■■■■□ 3.7
HMGB1-205ENST00000399494 SIPA1L3O60292 1781 aaPredicted RBP38.18■■■■□ 3.7
HMGB1-205ENST00000399494 CARMIL3Q8ND23 1372 aa38.18■■■■□ 3.7
HMGB1-205ENST00000399494 CEMIPQ8WUJ3 1361 aa38.18■■■■□ 3.7
HMGB1-205ENST00000399494 PRELPP51888 382 aa38.17■■■■□ 3.7
HMGB1-205ENST00000399494 FMNL2Q96PY5 1086 aa38.17■■■■□ 3.7
HMGB1-205ENST00000399494 TBC1D2BQ9UPU7 963 aa38.17■■■■□ 3.7
HMGB1-205ENST00000399494 IL6STP40189 918 aaPredicted RBP38.16■■■■□ 3.7
HMGB1-205ENST00000399494 LMNB1P20700 586 aa38.15■■■■□ 3.7
HMGB1-205ENST00000399494 FSTL1Q12841 308 aa38.15■■■■□ 3.7
HMGB1-205ENST00000399494 RSPH6AQ9H0K4 717 aa38.15■■■■□ 3.7
HMGB1-205ENST00000399494 DLEC1Q9Y238 1755 aa38.15■■■■□ 3.7
HMGB1-205ENST00000399494 KCNQ3O43525 872 aa38.14■■■■□ 3.7
HMGB1-205ENST00000399494 A1BGP04217 495 aa38.14■■■■□ 3.7
HMGB1-205ENST00000399494 PRKAR2BP31323 418 aa38.14■■■■□ 3.7
HMGB1-205ENST00000399494 CFAP53Q96M91 514 aa38.13■■■■□ 3.69
HMGB1-205ENST00000399494 ZNF330Q9Y3S2 320 aaPredicted RBP38.13■■■■□ 3.69
HMGB1-205ENST00000399494 ZC3H4Q9UPT8 1303 aaKnown RBP38.12■■■■□ 3.69
HMGB1-205ENST00000399494 BTBD11A6QL63 1104 aa38.12■■■■□ 3.69
HMGB1-205ENST00000399494 BRIP1Q9BX63 1249 aa38.1■■■■□ 3.69
HMGB1-205ENST00000399494 PRR5LQ6MZQ0 368 aa38.09■■■■□ 3.69
HMGB1-205ENST00000399494 PDE6BP35913 854 aa38.08■■■■□ 3.69
HMGB1-205ENST00000399494 PDZRN3Q9UPQ7 1066 aa38.08■■■■□ 3.69
HMGB1-205ENST00000399494 GLTPD2A6NH11 291 aa38.07■■■■□ 3.68
HMGB1-205ENST00000399494 NFKBIEO00221 500 aa38.07■■■■□ 3.68
HMGB1-205ENST00000399494 CCDC24Q8N4L8 307 aa38.07■■■■□ 3.68
HMGB1-205ENST00000399494 NUDCQ9Y266 331 aa38.07■■■■□ 3.68
HMGB1-205ENST00000399494 USP16Q9Y5T5 823 aa38.07■■■■□ 3.68
HMGB1-205ENST00000399494 TNRC6CQ9HCJ0 1690 aaKnown RBP38.07■■■■□ 3.68
HMGB1-205ENST00000399494 CAMTA2O94983 1202 aa38.06■■■■□ 3.68
HMGB1-205ENST00000399494 ZNF622Q969S3 477 aaKnown RBP eCLIP38.06■■■■□ 3.688e-11■■■■■ 55.4
HMGB1-205ENST00000399494 ANKRD31Q8N7Z5 1873 aa38.05■■■■□ 3.68
HMGB1-205ENST00000399494 SCN7AQ01118 1682 aa38.05■■■■□ 3.68
HMGB1-205ENST00000399494 HTRA3P83110 453 aa38.05■■■■□ 3.68
HMGB1-205ENST00000399494 WDR90Q96KV7 1748 aa38.04■■■■□ 3.68
HMGB1-205ENST00000399494 NPM2Q86SE8 214 aaKnown RBP38.04■■■■□ 3.68
HMGB1-205ENST00000399494 SETDB2Q96T68 719 aa38.04■■■■□ 3.68
HMGB1-205ENST00000399494 PPP2R1AP30153 589 aa38.03■■■■□ 3.68
HMGB1-205ENST00000399494 U2AF1L5P0DN76 240 aaPredicted RBP38.01■■■■□ 3.68
HMGB1-205ENST00000399494 VEGFAP15692 232 aaPredicted RBP38.01■■■■□ 3.68
HMGB1-205ENST00000399494 U2AF1Q01081 240 aaKnown RBP eCLIP38.01■■■■□ 3.683e-11■■■■□ 22.7
HMGB1-205ENST00000399494 SMC1BQ8NDV3 1235 aa38.01■■■■□ 3.68
HMGB1-205ENST00000399494 C21orf2O43822 256 aa38■■■■□ 3.67
HMGB1-205ENST00000399494 DZIP3Q86Y13 1208 aaKnown RBP38■■■■□ 3.67
HMGB1-205ENST00000399494 PRAMEF22A3QJZ6 481 aa37.99■■■■□ 3.67
HMGB1-205ENST00000399494 MCM10Q7L590 875 aa37.99■■■■□ 3.67
HMGB1-205ENST00000399494 KLRG1Q96E93 195 aa37.99■■■■□ 3.67
HMGB1-205ENST00000399494 ZNF219Q9P2Y4 722 aaPredicted RBP37.99■■■■□ 3.67
HMGB1-205ENST00000399494 CCDC88AQ3V6T2 1871 aa37.98■■■■□ 3.67
HMGB1-205ENST00000399494 PIP4K2AP48426 406 aaPredicted RBP37.98■■■■□ 3.67
HMGB1-205ENST00000399494 RTF1Q92541 710 aaKnown RBP37.98■■■■□ 3.67
HMGB1-205ENST00000399494 CNBD1Q8NA66 436 aa37.97■■■■□ 3.67
HMGB1-205ENST00000399494 SNRPA1P09661 255 aaKnown RBP37.96■■■■□ 3.67
HMGB1-205ENST00000399494 CLEC4GQ6UXB4 293 aa37.94■■■■□ 3.66
HMGB1-205ENST00000399494 COL11A2P13942 1736 aaPredicted RBP37.93■■■■□ 3.66
HMGB1-205ENST00000399494 POTECB2RU33 542 aa37.93■■■■□ 3.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms