RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 SHANK2Q9UPX8 1470 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 CDKL5O76039 1030 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 STX1AQ16623 288 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 PPP1R42Q7Z4L9 355 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 DNAAF4Q8WXU2 420 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 EVI5LQ96CN4 794 aa12.95□□□□□ -0.34
HPS4-202ENST00000398145 FSD2A1L4K1 749 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 U3KPZ7 1027 aaPredicted RBP12.94□□□□□ -0.34
HPS4-202ENST00000398145 F13A1P00488 732 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 KRT222Q8N1A0 295 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 A2MP01023 1474 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 FAM69CQ0P6D2 419 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 BMS1Q14692 1282 aaKnown RBP12.94□□□□□ -0.34
HPS4-202ENST00000398145 CEP85Q6P2H3 762 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 TSPYL1Q9H0U9 437 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 PDE4CQ08493 712 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 SKIDA1Q1XH10 827 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 RHPN1Q8TCX5 695 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 GTPBP4Q9BZE4 634 aaKnown RBP12.94□□□□□ -0.34
HPS4-202ENST00000398145 CCDC171Q6TFL3 1326 aa12.94□□□□□ -0.34
HPS4-202ENST00000398145 HMGB1P09429 215 aaKnown RBP12.93□□□□□ -0.34
HPS4-202ENST00000398145 DNM1Q05193 864 aaKnown RBP12.93□□□□□ -0.34
HPS4-202ENST00000398145 FSIP1Q8NA03 581 aa12.93□□□□□ -0.34
HPS4-202ENST00000398145 CCDC8Q9H0W5 538 aaPredicted RBP12.93□□□□□ -0.34
HPS4-202ENST00000398145 DUOX2Q9NRD8 1548 aa12.93□□□□□ -0.34
HPS4-202ENST00000398145 ZNF608Q9ULD9 1512 aaPredicted RBP12.93□□□□□ -0.34
HPS4-202ENST00000398145 WASLO00401 505 aaPredicted RBP12.93□□□□□ -0.34
HPS4-202ENST00000398145 SNW1Q13573 536 aaKnown RBP12.93□□□□□ -0.34
HPS4-202ENST00000398145 ARHGAP29Q52LW3 1261 aa12.93□□□□□ -0.34
HPS4-202ENST00000398145 SMAP1Q8IYB5 467 aaPredicted RBP12.93□□□□□ -0.34
HPS4-202ENST00000398145 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.93□□□□□ -0.341e-6■■□□□ 12.5
HPS4-202ENST00000398145 ZNHIT6Q9NWK9 470 aaKnown RBP12.93□□□□□ -0.34
HPS4-202ENST00000398145 MYL6BP14649 208 aa12.93□□□□□ -0.34
HPS4-202ENST00000398145 TTC39AQ5SRH9 613 aa12.93□□□□□ -0.34
HPS4-202ENST00000398145 CCDC102AQ96A19 550 aa12.93□□□□□ -0.34
HPS4-202ENST00000398145 DACT1Q9NYF0 836 aa12.93□□□□□ -0.34
HPS4-202ENST00000398145 ADGRL2O95490 1459 aa12.93□□□□□ -0.34
HPS4-202ENST00000398145 TOP1P11387 765 aaKnown RBP12.92□□□□□ -0.34
HPS4-202ENST00000398145 FKBP4Q02790 459 aaKnown RBP eCLIP12.92□□□□□ -0.34
HPS4-202ENST00000398145 VPS37DQ86XT2 251 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 POLR3GO15318 223 aaPredicted RBP12.92□□□□□ -0.34
HPS4-202ENST00000398145 TXLNAP40222 546 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 ANO6Q4KMQ2 910 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 RRP12Q5JTH9 1297 aaKnown RBP12.92□□□□□ -0.34
HPS4-202ENST00000398145 NECAB1Q8N987 351 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 PPP1R9BQ96SB3 815 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 LMBRD1Q9NUN5 540 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 AMOTL1Q8IY63 956 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 TRMT2AQ8IZ69 625 aaKnown RBP12.92□□□□□ -0.34
HPS4-202ENST00000398145 SKILP12757 684 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 TRHP20396 242 aaPredicted RBP12.92□□□□□ -0.34
HPS4-202ENST00000398145 C8orf76Q96K31 380 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 GBP3Q9H0R5 595 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 ANTXR1Q9H6X2 564 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 MAGEC2Q9UBF1 373 aaPredicted RBP12.92□□□□□ -0.34
HPS4-202ENST00000398145 ADGRL1O94910 1474 aa12.92□□□□□ -0.34
HPS4-202ENST00000398145 GUCY1B3Q02153 619 aa12.91□□□□□ -0.34
HPS4-202ENST00000398145 CEP126Q9P2H0 1117 aa12.91□□□□□ -0.34
HPS4-202ENST00000398145 EPB41L2O43491 1005 aaKnown RBP12.91□□□□□ -0.34
HPS4-202ENST00000398145 MAPK8IP2Q13387 824 aaPredicted RBP12.91□□□□□ -0.34
HPS4-202ENST00000398145 POLKQ9UBT6 870 aa12.91□□□□□ -0.34
HPS4-202ENST00000398145 SLC3A2P08195 630 aaKnown RBP12.91□□□□□ -0.34
HPS4-202ENST00000398145 NCBP3Q53F19 620 aaKnown RBP12.91□□□□□ -0.34
HPS4-202ENST00000398145 VPS53Q5VIR6 699 aa12.91□□□□□ -0.34
HPS4-202ENST00000398145 TMC6Q7Z403 805 aa12.91□□□□□ -0.34
HPS4-202ENST00000398145 GAS2L3Q86XJ1 694 aa12.91□□□□□ -0.34
HPS4-202ENST00000398145 NOL10Q9BSC4 688 aaKnown RBP12.91□□□□□ -0.34
HPS4-202ENST00000398145 ZSCAN16Q9H4T2 348 aaPredicted RBP12.91□□□□□ -0.34
HPS4-202ENST00000398145 ATP8B2P98198 1209 aa12.9□□□□□ -0.34
HPS4-202ENST00000398145 GTF2F1P35269 517 aaKnown RBP eCLIP12.9□□□□□ -0.34
HPS4-202ENST00000398145 TYRO3Q06418 890 aa12.9□□□□□ -0.34
HPS4-202ENST00000398145 IMMTQ16891 758 aaKnown RBP12.9□□□□□ -0.34
HPS4-202ENST00000398145 STK11IPQ8N1F8 1099 aa12.9□□□□□ -0.34
HPS4-202ENST00000398145 GCC2Q8IWJ2 1684 aa12.9□□□□□ -0.34
HPS4-202ENST00000398145 NPHP3Q7Z494 1330 aa12.9□□□□□ -0.34
HPS4-202ENST00000398145 ZNF521Q96K83 1311 aa12.9□□□□□ -0.34
HPS4-202ENST00000398145 RDXP35241 583 aaKnown RBP12.9□□□□□ -0.34
HPS4-202ENST00000398145 HMG20BQ9P0W2 317 aa12.9□□□□□ -0.34
HPS4-202ENST00000398145 CCAR1Q8IX12 1150 aaKnown RBP12.9□□□□□ -0.35
HPS4-202ENST00000398145 PHACTR3Q96KR7 559 aa12.9□□□□□ -0.35
HPS4-202ENST00000398145 FEZ1Q99689 392 aa12.9□□□□□ -0.35
HPS4-202ENST00000398145 TTC21BQ7Z4L5 1316 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 CHMLP26374 656 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 LARP1Q6PKG0 1096 aaKnown RBP12.89□□□□□ -0.35
HPS4-202ENST00000398145 PIBF1Q8WXW3 757 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 DBF4Q9UBU7 674 aaPredicted RBP12.89□□□□□ -0.35
HPS4-202ENST00000398145 DNAJC5BQ9UF47 199 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 SYCP2Q9BX26 1530 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 KDM5BQ9UGL1 1544 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 EVA1CP58658 441 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 MYRIPQ8NFW9 859 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 TIGD1Q96MW7 591 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 TRERF1Q96PN7 1200 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 SLC26A8Q96RN1 970 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 SYT1P21579 422 aa12.89□□□□□ -0.35
HPS4-202ENST00000398145 CCDC69A6NI79 296 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 PTGS1P23219 599 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 CASQ1P31415 396 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 AK2P54819 239 aa12.88□□□□□ -0.35
HPS4-202ENST00000398145 JAKMIP3Q5VZ66 844 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms