RNA–Protein interactions for RNA: ENST00000389195.6

LTN1-203, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LTN1, Length 2,714 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-203ENST00000389195 NUTM1Q86Y26 1132 aa12.65□□□□□ -0.38
LTN1-203ENST00000389195 SLKQ9H2G2 1235 aaPredicted RBP12.65□□□□□ -0.38
LTN1-203ENST00000389195 SRGAP3O43295 1099 aa12.64□□□□□ -0.39
LTN1-203ENST00000389195 RPAP2Q8IXW5 612 aaPredicted RBP12.64□□□□□ -0.39
LTN1-203ENST00000389195 NCOA3Q9Y6Q9 1424 aa12.64□□□□□ -0.39
LTN1-203ENST00000389195 IL2RBP14784 551 aa12.64□□□□□ -0.39
LTN1-203ENST00000389195 TBC1D9Q6ZT07 1266 aa12.64□□□□□ -0.39
LTN1-203ENST00000389195 DCAF5Q96JK2 942 aa12.64□□□□□ -0.39
LTN1-203ENST00000389195 RBM42Q9BTD8 480 aaKnown RBP12.64□□□□□ -0.39
LTN1-203ENST00000389195 RIC3Q7Z5B4 369 aa12.63□□□□□ -0.39
LTN1-203ENST00000389195 C9orf78Q9NZ63 289 aaPredicted RBP12.63□□□□□ -0.39
LTN1-203ENST00000389195 ASAP1Q9ULH1 1129 aa12.63□□□□□ -0.39
LTN1-203ENST00000389195 COL5A2P05997 1499 aaPredicted RBP12.63□□□□□ -0.39
LTN1-203ENST00000389195 SURF6O75683 361 aaKnown RBP12.63□□□□□ -0.39
LTN1-203ENST00000389195 NCAPD2Q15021 1401 aa12.63□□□□□ -0.39
LTN1-203ENST00000389195 FAM208AQ9UK61 1670 aaKnown RBP12.63□□□□□ -0.39
LTN1-203ENST00000389195 SOS1Q07889 1333 aaPredicted RBP12.62□□□□□ -0.39
LTN1-203ENST00000389195 UTRNP46939 3433 aa12.62□□□□□ -0.39
LTN1-203ENST00000389195 SIL1Q9H173 461 aa12.62□□□□□ -0.39
LTN1-203ENST00000389195 DAXXQ9UER7 740 aaPredicted RBP12.62□□□□□ -0.39
LTN1-203ENST00000389195 MYD88Q99836 296 aa12.62□□□□□ -0.39
LTN1-203ENST00000389195 C22orf23Q9BZE7 217 aa12.62□□□□□ -0.39
LTN1-203ENST00000389195 CHMP4BQ9H444 224 aaKnown RBP12.62□□□□□ -0.39
LTN1-203ENST00000389195 LMO7Q8WWI1 1683 aa12.62□□□□□ -0.39
LTN1-203ENST00000389195 CPDO75976 1380 aa12.62□□□□□ -0.39
LTN1-203ENST00000389195 IGKV5-2P06315 115 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 CCDC9Q9Y3X0 531 aaKnown RBP12.61□□□□□ -0.39
LTN1-203ENST00000389195 NBPF26B4DH59 902 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 ATP8B2P98198 1209 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 NBPF14Q5TI25 921 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 NBPF10Q6P3W6 841 aaKnown RBP12.61□□□□□ -0.39
LTN1-203ENST00000389195 TTLL7Q6ZT98 887 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 NBPF15Q8N660 670 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 BABAM1Q9NWV8 329 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 GNAI3P08754 354 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 SDSP20132 328 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 KSR2Q6VAB6 950 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 UNC5CLQ8IV45 518 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 ACSBG1Q96GR2 724 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 TBC1D32Q96NH3 1257 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 FOXD4L1Q9NU39 408 aa12.61□□□□□ -0.39
LTN1-203ENST00000389195 EPHA10Q5JZY3 1008 aa12.6□□□□□ -0.39
LTN1-203ENST00000389195 ZBTB3Q9H5J0 574 aa12.6□□□□□ -0.39
LTN1-203ENST00000389195 KDM3BQ7LBC6 1761 aa12.6□□□□□ -0.39
LTN1-203ENST00000389195 FAM182BQ5T319 152 aa12.6□□□□□ -0.39
LTN1-203ENST00000389195 KAZALD1Q96I82 304 aa12.6□□□□□ -0.39
LTN1-203ENST00000389195 DDX21Q9NR30 783 aaKnown RBP eCLIP12.6□□□□□ -0.39
LTN1-203ENST00000389195 CRYBG1Q9Y4K1 1723 aa12.59□□□□□ -0.39
LTN1-203ENST00000389195 SNRPA1P09661 255 aaKnown RBP12.59□□□□□ -0.39
LTN1-203ENST00000389195 KCNQ4P56696 695 aa12.59□□□□□ -0.39
LTN1-203ENST00000389195 RILPL2Q969X0 211 aa12.59□□□□□ -0.39
LTN1-203ENST00000389195 SUCLG2Q96I99 432 aa12.59□□□□□ -0.39
LTN1-203ENST00000389195 CARD10Q9BWT7 1032 aa12.59□□□□□ -0.39
LTN1-203ENST00000389195 UPF2Q9HAU5 1272 aaKnown RBP12.59□□□□□ -0.39
LTN1-203ENST00000389195 HEG1Q9ULI3 1381 aa12.59□□□□□ -0.39
LTN1-203ENST00000389195 BMP2KLQ5H9B9 411 aa12.59□□□□□ -0.39
LTN1-203ENST00000389195 CCDC85AQ96PX6 553 aaPredicted RBP12.59□□□□□ -0.39
LTN1-203ENST00000389195 FMNL2Q96PY5 1086 aa12.59□□□□□ -0.39
LTN1-203ENST00000389195 HMMRO75330 724 aa12.58□□□□□ -0.4
LTN1-203ENST00000389195 TTC22Q5TAA0 569 aa12.58□□□□□ -0.4
LTN1-203ENST00000389195 PIGBQ92521 554 aa12.58□□□□□ -0.4
LTN1-203ENST00000389195 BICC1Q9H694 974 aaKnown RBP12.58□□□□□ -0.4
LTN1-203ENST00000389195 SRCAPQ6ZRS2 3230 aa12.58□□□□□ -0.4
LTN1-203ENST00000389195 TRIM6-TRIM34B2RNG4 842 aa12.58□□□□□ -0.4
LTN1-203ENST00000389195 CD2BP2O95400 341 aaKnown RBP12.58□□□□□ -0.4
LTN1-203ENST00000389195 ANKRD13DQ6ZTN6 518 aa12.58□□□□□ -0.4
LTN1-203ENST00000389195 TBC1D2Q9BYX2 928 aa12.58□□□□□ -0.4
LTN1-203ENST00000389195 LRRCC1Q9C099 1032 aa12.58□□□□□ -0.4
LTN1-203ENST00000389195 PDE1AP54750 535 aa12.57□□□□□ -0.4
LTN1-203ENST00000389195 OS9Q13438 667 aaPredicted RBP12.57□□□□□ -0.4
LTN1-203ENST00000389195 SMIM5Q71RC9 77 aa12.57□□□□□ -0.4
LTN1-203ENST00000389195 HYPKQ9NX55 129 aa12.57□□□□□ -0.4
LTN1-203ENST00000389195 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.57□□□□□ -0.42e-6■■□□□ 14.3
LTN1-203ENST00000389195 OVOS2A0A0G2JMS6 1433 aa12.57□□□□□ -0.4
LTN1-203ENST00000389195 PCDH11XQ9BZA7 1347 aa12.57□□□□□ -0.4
LTN1-203ENST00000389195 PCDH11YQ9BZA8 1340 aa12.57□□□□□ -0.4
LTN1-203ENST00000389195 UBE3BQ7Z3V4 1068 aa12.57□□□□□ -0.4
LTN1-203ENST00000389195 LRP10Q7Z4F1 713 aa12.57□□□□□ -0.4
LTN1-203ENST00000389195 IL25Q9H293 177 aa12.56□□□□□ -0.4
LTN1-203ENST00000389195 C5P01031 1676 aa12.56□□□□□ -0.4
LTN1-203ENST00000389195 HOXB7P09629 217 aa12.56□□□□□ -0.4
LTN1-203ENST00000389195 DNAJC10Q8IXB1 793 aa12.56□□□□□ -0.4
LTN1-203ENST00000389195 SYNE4Q8N205 404 aa12.56□□□□□ -0.4
LTN1-203ENST00000389195 NDUFB9Q9Y6M9 179 aa12.56□□□□□ -0.4
LTN1-203ENST00000389195 ROBO1Q9Y6N7 1651 aa12.56□□□□□ -0.4
LTN1-203ENST00000389195 DDRGK1Q96HY6 314 aa12.55□□□□□ -0.4
LTN1-203ENST00000389195 TMOD3Q9NYL9 352 aa12.55□□□□□ -0.4
LTN1-203ENST00000389195 SCN11AQ9UI33 1791 aa12.55□□□□□ -0.4
LTN1-203ENST00000389195 GRM8O00222 908 aa12.55□□□□□ -0.4
LTN1-203ENST00000389195 PRIM1P49642 420 aaKnown RBP12.55□□□□□ -0.4
LTN1-203ENST00000389195 SSH3Q8TE77 659 aa12.55□□□□□ -0.4
LTN1-203ENST00000389195 CHMP3Q9Y3E7 222 aa12.55□□□□□ -0.4
LTN1-203ENST00000389195 NEURL1BA8MQ27 555 aa12.54□□□□□ -0.4
LTN1-203ENST00000389195 UBAP1LF5GYI3 381 aa12.54□□□□□ -0.4
LTN1-203ENST00000389195 SLC4A9Q96Q91 983 aa12.54□□□□□ -0.4
LTN1-203ENST00000389195 DTNBO60941 627 aa12.54□□□□□ -0.4
LTN1-203ENST00000389195 MX1P20591 662 aa12.54□□□□□ -0.4
LTN1-203ENST00000389195 MYT1Q01538 1121 aa12.54□□□□□ -0.4
LTN1-203ENST00000389195 PTF1AQ7RTS3 328 aa12.54□□□□□ -0.4
LTN1-203ENST00000389195 RHPN1Q8TCX5 695 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms