RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 PSMC4P43686 418 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 SKILP12757 684 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 SEC62Q99442 399 aaKnown RBP10.07□□□□□ -0.8
LIG3-202ENST00000378526 CETN3O15182 167 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 FOSBP53539 338 aa10.07□□□□□ -0.8
LIG3-202ENST00000378526 RASSF2P50749 326 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 COG6Q9Y2V7 657 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 TMEM132AQ24JP5 1023 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 HVCN1Q96D96 273 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 FAN1Q9Y2M0 1017 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 JAKMIP2Q96AA8 810 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 HMGB3O15347 200 aaKnown RBP10.06□□□□□ -0.8
LIG3-202ENST00000378526 SLMAPQ14BN4 828 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 SELENOOQ9BVL4 669 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 VGLL3A8MV65 326 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 ZKSCAN8Q15776 578 aaPredicted RBP10.06□□□□□ -0.8
LIG3-202ENST00000378526 BCAP29Q9UHQ4 241 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 RAB3IPQ96QF0 476 aaPredicted RBP10.06□□□□□ -0.8
LIG3-202ENST00000378526 CYP46A1Q9Y6A2 500 aa10.06□□□□□ -0.8
LIG3-202ENST00000378526 VPS37DQ86XT2 251 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 CTAGE9A4FU28 777 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 CCDC57Q2TAC2 916 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 VPS18Q9P253 973 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 PPP6R1Q9UPN7 881 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 ATP2C2O75185 946 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 INTS8Q75QN2 995 aaKnown RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 TTC12Q9H892 705 aaPredicted RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 SLU7O95391 586 aaKnown RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 CACNA2D4Q7Z3S7 1137 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 Q9H521 79 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 CEP85LQ5SZL2 805 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 APBB1IPQ7Z5R6 666 aaPredicted RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 CCDC170Q8IYT3 715 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 BACH2Q9BYV9 841 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 CFDP1Q9UEE9 299 aaPredicted RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 COG7P83436 770 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 KIAA0753Q2KHM9 967 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 CCDC30Q5VVM6 783 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 ZSCAN31Q96LW9 406 aaPredicted RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 NUP88Q99567 741 aaPredicted RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 KIF1CO43896 1103 aaKnown RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 DDX58O95786 925 aaKnown RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 PRPHP41219 470 aa10.05□□□□□ -0.8
LIG3-202ENST00000378526 LARP1BQ659C4 914 aaKnown RBP10.05□□□□□ -0.8
LIG3-202ENST00000378526 SF3B2Q13435 895 aaKnown RBP10.04□□□□□ -0.8
LIG3-202ENST00000378526 BICD1Q96G01 975 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 ARHGAP35Q9NRY4 1499 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 ARMC9Q7Z3E5 817 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 SCAND2PQ9GZW5 306 aaPredicted RBP10.04□□□□□ -0.8
LIG3-202ENST00000378526 MAP3K21Q5TCX8 1036 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 NAA16Q6N069 864 aaPredicted RBP10.04□□□□□ -0.8
LIG3-202ENST00000378526 EPSTI1Q96J88 318 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 JADE2Q9NQC1 790 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 ZNF330Q9Y3S2 320 aaPredicted RBP10.04□□□□□ -0.8
LIG3-202ENST00000378526 SMARCC2Q8TAQ2 1214 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 MICAL1Q8TDZ2 1067 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 PABPN1LA6NDY0 278 aaKnown RBP10.04□□□□□ -0.8
LIG3-202ENST00000378526 GIGYF1O75420 1035 aaPredicted RBP10.04□□□□□ -0.8
LIG3-202ENST00000378526 CALCOCO2Q13137 446 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 FAF1Q9UNN5 650 aaPredicted RBP10.04□□□□□ -0.8
LIG3-202ENST00000378526 SMC1BQ8NDV3 1235 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 SATB1Q01826 763 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 WASF1Q92558 559 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 GIMAP4Q9NUV9 329 aa10.04□□□□□ -0.8
LIG3-202ENST00000378526 LRRD1A4D1F6 860 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 ATP2A1O14983 1001 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 PLIN1O60240 522 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 ERCC3P19447 782 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 CTNNA2P26232 953 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 TERF1P54274 439 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 TSG101Q99816 390 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 CEBPZQ03701 1054 aaKnown RBP10.03□□□□□ -0.8
LIG3-202ENST00000378526 PDCD2Q16342 344 aaPredicted RBP10.03□□□□□ -0.8
LIG3-202ENST00000378526 NUCKS1Q9H1E3 243 aaKnown RBP10.03□□□□□ -0.8
LIG3-202ENST00000378526 TNIKQ9UKE5 1360 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 CCDC196A0A1B0GTZ2 297 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 CTAGE15A4D2H0 777 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 CTAGE8P0CG41 777 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 GFAPP14136 432 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 CTAGE4Q8IX94 777 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 LRRC43Q8N309 656 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 MRFAP1L1Q96HT8 127 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 EFCC1Q9HA90 598 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 MKL2Q9ULH7 1088 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 PSMD7P51665 324 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 STX1AQ16623 288 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 RAD21O60216 631 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 RASEFQ8IZ41 740 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 ATP2A3Q93084 1043 aa10.03□□□□□ -0.8
LIG3-202ENST00000378526 BAZ1BQ9UIG0 1483 aaKnown RBP10.03□□□□□ -0.8
LIG3-202ENST00000378526 MORC4Q8TE76 937 aa10.02□□□□□ -0.8
LIG3-202ENST00000378526 AFAP1L1Q8TED9 768 aa10.02□□□□□ -0.8
LIG3-202ENST00000378526 SSX2IPQ9Y2D8 614 aa10.02□□□□□ -0.8
LIG3-202ENST00000378526 RBM26Q5T8P6 1007 aaKnown RBP10.02□□□□□ -0.8
LIG3-202ENST00000378526 XAB2Q9HCS7 855 aaKnown RBP10.02□□□□□ -0.81
LIG3-202ENST00000378526 ADCY5O95622 1261 aa10.02□□□□□ -0.81
LIG3-202ENST00000378526 GCC1Q96CN9 775 aa10.02□□□□□ -0.81
LIG3-202ENST00000378526 GTF2E1P29083 439 aaPredicted RBP10.02□□□□□ -0.81
LIG3-202ENST00000378526 SPTY2D1Q68D10 685 aaPredicted RBP10.02□□□□□ -0.81
LIG3-202ENST00000378526 CCDC12Q8WUD4 166 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms