RNA–Protein interactions for RNA: ENST00000377340.6

CRNKL1-202, Transcript of crooked neck pre-mRNA splicing factor 1, humanhuman

TSL 1 (best) BASIC

Gene CRNKL1, Length 4,406 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNKL1-202ENST00000377340 FAM89AQ96GI7 184 aa10.24□□□□□ -0.77
CRNKL1-202ENST00000377340 CDC5LQ99459 802 aaKnown RBP10.24□□□□□ -0.77
CRNKL1-202ENST00000377340 KRT27Q7Z3Y8 459 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 SKAP1Q86WV1 359 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 MEIS3Q99687 375 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 SPATA31A3Q5VYP0 1347 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 SHROOM2Q13796 1616 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 MAP3K4Q9Y6R4 1608 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 HTATSF1O43719 755 aaKnown RBP10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 SLC52A2Q9HAB3 445 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 H3BQV1 296 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 IFFO2Q5TF58 517 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 UNC5CLQ8IV45 518 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 CCAR1Q8IX12 1150 aaKnown RBP10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 PIK3R4Q99570 1358 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 ADGRL3Q9HAR2 1447 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 HCLS1P14317 486 aaPredicted RBP10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 KSR2Q6VAB6 950 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 ASAP1Q9ULH1 1129 aa10.23□□□□□ -0.77
CRNKL1-202ENST00000377340 DIP2BQ9P265 1576 aa10.22□□□□□ -0.77
CRNKL1-202ENST00000377340 F8W031 263 aaPredicted RBP10.22□□□□□ -0.77
CRNKL1-202ENST00000377340 SF3A1Q15459 793 aaKnown RBP10.22□□□□□ -0.77
CRNKL1-202ENST00000377340 CWC27Q6UX04 472 aaKnown RBP10.22□□□□□ -0.77
CRNKL1-202ENST00000377340 AXIN2Q9Y2T1 843 aa10.22□□□□□ -0.77
CRNKL1-202ENST00000377340 NOP58Q9Y2X3 529 aaKnown RBP10.22□□□□□ -0.77
CRNKL1-202ENST00000377340 USP16Q9Y5T5 823 aa10.22□□□□□ -0.77
CRNKL1-202ENST00000377340 AAMPQ13685 434 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 G2E3Q7L622 706 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 IL17REQ8NFR9 667 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 KIF1BPQ96EK5 621 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 UTP14AQ9BVJ6 771 aaKnown RBP10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 CARD10Q9BWT7 1032 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 TMOD2Q9NZR1 351 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 TNNQ9UQP3 1299 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 VAMP4O75379 141 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 PHKG2P15735 406 aa10.21□□□□□ -0.77
CRNKL1-202ENST00000377340 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 CCDC152Q4G0S7 254 aa10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 CDC45O75419 566 aa10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 GRM1Q13255 1194 aa10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 TTLL12Q14166 644 aaPredicted RBP10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 SLC4A8Q2Y0W8 1093 aa10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 CHD1LQ86WJ1 897 aa10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 DZIP1Q86YF9 867 aaKnown RBP10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 ANKRD18AQ8IVF6 992 aa10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 JAG2Q9Y219 1238 aa10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 AKAP2Q9Y2D5 859 aa10.21□□□□□ -0.78
CRNKL1-202ENST00000377340 ERBB3P21860 1342 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 GRM8O00222 908 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 IRS4O14654 1257 aaPredicted RBP10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 TDO2P48775 406 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 TSHZ3Q63HK5 1081 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 ZFYVE9O95405 1425 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 PTPRCP08575 1304 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 WDR17Q8IZU2 1322 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 DDX21Q9NR30 783 aaKnown RBP eCLIP10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 KIF3AQ9Y496 699 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 RIMBP2O15034 1052 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 CNBD1Q8NA66 436 aa10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 GZF1Q9H116 711 aaPredicted RBP10.2□□□□□ -0.78
CRNKL1-202ENST00000377340 GCC2Q8IWJ2 1684 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 NKTRP30414 1462 aaKnown RBP10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 RBM26Q5T8P6 1007 aaKnown RBP10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 FAM196AQ6ZSG2 479 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 NACAP1Q9BZK3 213 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 CCDC87Q9NVE4 849 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 USP6P35125 1406 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 DIP2CQ9Y2E4 1556 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 IL16Q14005 1332 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 SLC5A1P13866 664 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 PA2G4Q9UQ80 394 aaKnown RBP10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 MINDY4BA8MYZ0 360 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 LINS1Q8NG48 757 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 AIDAQ96BJ3 306 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 LOC102724428A0A0B4J2F2 783 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 PTMAP06454 111 aaKnown RBP10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 ATP2B1P20020 1258 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 SIK1P57059 783 aa10.19□□□□□ -0.78
CRNKL1-202ENST00000377340 CREBRFQ8IUR6 639 aa10.18□□□□□ -0.78
CRNKL1-202ENST00000377340 ZC3H12CQ9C0D7 883 aaKnown RBP10.18□□□□□ -0.78
CRNKL1-202ENST00000377340 TCEAL9Q9UHQ7 104 aa10.18□□□□□ -0.78
CRNKL1-202ENST00000377340 TRIM29Q14134 588 aa10.18□□□□□ -0.78
CRNKL1-202ENST00000377340 CLEC11AQ9Y240 323 aa10.18□□□□□ -0.78
CRNKL1-202ENST00000377340 INSRP06213 1382 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 SLC3A2P08195 630 aaKnown RBP10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 USP5P45974 858 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 TRIM35Q9UPQ4 493 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 KIF1BO60333 1816 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 SBNO2Q9Y2G9 1366 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 VPS37CA5D8V6 355 aaPredicted RBP10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 NEK4P51957 841 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 SART3Q15020 963 aaKnown RBP10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 FAM135BQ49AJ0 1406 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 KDM5CP41229 1560 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 PIBF1Q8WXW3 757 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 C22orf23Q9BZE7 217 aa10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 CRACR2BQ8N4Y2 399 aaPredicted RBP10.17□□□□□ -0.78
CRNKL1-202ENST00000377340 ERVV-2B6SEH9 535 aa10.16□□□□□ -0.78
CRNKL1-202ENST00000377340 GOLIM4O00461 696 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms