RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 HOXC9P31274 260 aa17.17■□□□□ 0.34
CLCNKA-202ENST00000375692 GDPD2Q9HCC8 539 aa17.17■□□□□ 0.34
CLCNKA-202ENST00000375692 FAM13BQ9NYF5 915 aa17.17■□□□□ 0.34
CLCNKA-202ENST00000375692 ANO2Q9NQ90 1003 aa17.16■□□□□ 0.34
CLCNKA-202ENST00000375692 TRIM6-TRIM34B2RNG4 842 aa17.16■□□□□ 0.34
CLCNKA-202ENST00000375692 UPF3BQ9BZI7 483 aaKnown RBP17.16■□□□□ 0.34
CLCNKA-202ENST00000375692 SBNO1A3KN83 1393 aa17.15■□□□□ 0.34
CLCNKA-202ENST00000375692 PNMA6EA0A0J9YXQ4 647 aa17.15■□□□□ 0.34
CLCNKA-202ENST00000375692 TSPYL4Q9UJ04 414 aa17.15■□□□□ 0.34
CLCNKA-202ENST00000375692 FLT4P35916 1363 aa17.14■□□□□ 0.34
CLCNKA-202ENST00000375692 GADD45BO75293 160 aaPredicted RBP17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 GNAI2P04899 355 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 CUL4AQ13619 759 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 MPNDQ8N594 471 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 NECTIN2Q92692 538 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 CRB1P82279 1406 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 NPHP3Q7Z494 1330 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 MBD3O95983 291 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 CHMLP26374 656 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 ZC3H6P61129 1189 aaKnown RBP17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 TPRNQ4KMQ1 711 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 UNC5CLQ8IV45 518 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 EYA1Q99502 592 aa17.14■□□□□ 0.33
CLCNKA-202ENST00000375692 SALL3Q9BXA9 1300 aa17.13■□□□□ 0.33
CLCNKA-202ENST00000375692 UQCRHLA0A096LP55 91 aa17.13■□□□□ 0.33
CLCNKA-202ENST00000375692 UQCRHP07919 91 aa17.13■□□□□ 0.33
CLCNKA-202ENST00000375692 MX1P20591 662 aa17.13■□□□□ 0.33
CLCNKA-202ENST00000375692 CCT4P50991 539 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-202ENST00000375692 TERF1P54274 439 aa17.13■□□□□ 0.33
CLCNKA-202ENST00000375692 LRRCC1Q9C099 1032 aa17.13■□□□□ 0.33
CLCNKA-202ENST00000375692 CCDC39Q9UFE4 941 aa17.13■□□□□ 0.33
CLCNKA-202ENST00000375692 MTHFSDQ2M296 383 aaKnown RBP17.12■□□□□ 0.33
CLCNKA-202ENST00000375692 MCM2P49736 904 aa17.12■□□□□ 0.33
CLCNKA-202ENST00000375692 IL25Q9H293 177 aa17.12■□□□□ 0.33
CLCNKA-202ENST00000375692 TSPY26PQ9H489 355 aa17.12■□□□□ 0.33
CLCNKA-202ENST00000375692 MCCP23508 829 aa17.11■□□□□ 0.33
CLCNKA-202ENST00000375692 USHBP1Q8N6Y0 703 aa17.11■□□□□ 0.33
CLCNKA-202ENST00000375692 AXIN2Q9Y2T1 843 aa17.11■□□□□ 0.33
CLCNKA-202ENST00000375692 KCNH5Q8NCM2 988 aa17.11■□□□□ 0.33
CLCNKA-202ENST00000375692 ARHGEF25Q86VW2 580 aa17.1■□□□□ 0.33
CLCNKA-202ENST00000375692 RTF1Q92541 710 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-202ENST00000375692 TRPM3Q9HCF6 1732 aaPredicted RBP17.1■□□□□ 0.33
CLCNKA-202ENST00000375692 PTMAP06454 111 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-202ENST00000375692 USP48Q86UV5 1035 aa17.1■□□□□ 0.33
CLCNKA-202ENST00000375692 IP6K1Q92551 441 aa17.1■□□□□ 0.33
CLCNKA-202ENST00000375692 KIF1AQ12756 1690 aa17.09■□□□□ 0.33
CLCNKA-202ENST00000375692 FKBP5Q13451 457 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-202ENST00000375692 ARID3AQ99856 593 aa17.09■□□□□ 0.33
CLCNKA-202ENST00000375692 IL1RAPL2Q9NP60 686 aa17.09■□□□□ 0.33
CLCNKA-202ENST00000375692 NFAT5O94916 1531 aa17.09■□□□□ 0.33
CLCNKA-202ENST00000375692 MAP4K4O95819 1239 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-202ENST00000375692 INTS4Q96HW7 963 aaKnown RBP17.09■□□□□ 0.33
CLCNKA-202ENST00000375692 SPATA31A3Q5VYP0 1347 aa17.09■□□□□ 0.33
CLCNKA-202ENST00000375692 MCM5P33992 734 aa17.08■□□□□ 0.33
CLCNKA-202ENST00000375692 ATP8B2P98198 1209 aa17.08■□□□□ 0.33
CLCNKA-202ENST00000375692 LRRC59Q96AG4 307 aaKnown RBP17.08■□□□□ 0.33
CLCNKA-202ENST00000375692 LARP6Q9BRS8 491 aaKnown RBP17.08■□□□□ 0.33
CLCNKA-202ENST00000375692 CSPP1Q1MSJ5 1256 aa17.08■□□□□ 0.32
CLCNKA-202ENST00000375692 LRRFIP2Q9Y608 721 aaKnown RBP17.08■□□□□ 0.32
CLCNKA-202ENST00000375692 PXDNQ92626 1479 aa17.08■□□□□ 0.32
CLCNKA-202ENST00000375692 ANAPC15P60006 121 aa17.07■□□□□ 0.32
CLCNKA-202ENST00000375692 FLIIQ13045 1269 aa17.07■□□□□ 0.32
CLCNKA-202ENST00000375692 ZNF830Q96NB3 372 aaPredicted RBP17.07■□□□□ 0.32
CLCNKA-202ENST00000375692 STK31Q9BXU1 1019 aa17.07■□□□□ 0.32
CLCNKA-202ENST00000375692 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLCNKA-202ENST00000375692 NBPF6Q5VWK0 638 aa17.07■□□□□ 0.32
CLCNKA-202ENST00000375692 NUTM1Q86Y26 1132 aa17.07■□□□□ 0.32
CLCNKA-202ENST00000375692 NBPF4Q96M43 638 aa17.07■□□□□ 0.32
CLCNKA-202ENST00000375692 DTNBO60941 627 aa17.06■□□□□ 0.32
CLCNKA-202ENST00000375692 CHRNA2Q15822 529 aa17.06■□□□□ 0.32
CLCNKA-202ENST00000375692 IGSF1Q8N6C5 1336 aa17.06■□□□□ 0.32
CLCNKA-202ENST00000375692 MED1Q15648 1581 aaPredicted RBP17.06■□□□□ 0.32
CLCNKA-202ENST00000375692 GNAI3P08754 354 aa17.05■□□□□ 0.32
CLCNKA-202ENST00000375692 SYAP1Q96A49 352 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-202ENST00000375692 USP54Q70EL1 1684 aa17.05■□□□□ 0.32
CLCNKA-202ENST00000375692 SRCIN1Q9C0H9 1055 aa17.05■□□□□ 0.32
CLCNKA-202ENST00000375692 STAP2Q9UGK3 403 aa17.05■□□□□ 0.32
CLCNKA-202ENST00000375692 SOS2Q07890 1332 aaPredicted RBP17.05■□□□□ 0.32
CLCNKA-202ENST00000375692 TNS3Q68CZ2 1445 aa17.04■□□□□ 0.32
CLCNKA-202ENST00000375692 LTN1O94822 1766 aa17.04■□□□□ 0.32
CLCNKA-202ENST00000375692 SASS6Q6UVJ0 657 aa17.04■□□□□ 0.32
CLCNKA-202ENST00000375692 JARID2Q92833 1246 aaPredicted RBP17.04■□□□□ 0.32
CLCNKA-202ENST00000375692 CNPY2Q9Y2B0 182 aa17.04■□□□□ 0.32
CLCNKA-202ENST00000375692 ALS2Q96Q42 1657 aa17.04■□□□□ 0.32
CLCNKA-202ENST00000375692 WDR33Q9C0J8 1336 aaKnown RBP17.03■□□□□ 0.32
CLCNKA-202ENST00000375692 USP25Q9UHP3 1055 aa17.03■□□□□ 0.32
CLCNKA-202ENST00000375692 TCHHQ07283 1943 aa17.03■□□□□ 0.32
CLCNKA-202ENST00000375692 SLIT3O75094 1523 aa17.03■□□□□ 0.32
CLCNKA-202ENST00000375692 HSPA4P34932 840 aa17.02■□□□□ 0.32
CLCNKA-202ENST00000375692 KIAA2012Q0VF49 1180 aa17.02■□□□□ 0.32
CLCNKA-202ENST00000375692 USP44Q9H0E7 712 aa17.02■□□□□ 0.32
CLCNKA-202ENST00000375692 LTBP4Q8N2S1 1624 aa17.02■□□□□ 0.32
CLCNKA-202ENST00000375692 C17orf53Q8N3J3 647 aaPredicted RBP17.02■□□□□ 0.31
CLCNKA-202ENST00000375692 RGPD1P0DJD0 1748 aa17.02■□□□□ 0.31
CLCNKA-202ENST00000375692 ARHGEF10O15013 1369 aa17.02■□□□□ 0.31
CLCNKA-202ENST00000375692 DYNC1I1O14576 645 aa17.01■□□□□ 0.31
CLCNKA-202ENST00000375692 CCDC30Q5VVM6 783 aa17.01■□□□□ 0.31
CLCNKA-202ENST00000375692 ANKRD24Q8TF21 1146 aa17.01■□□□□ 0.31
CLCNKA-202ENST00000375692 RPAP1Q9BWH6 1393 aaPredicted RBP17.01■□□□□ 0.31
CLCNKA-202ENST00000375692 DNTTIP2Q5QJE6 756 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms